Wall clock time and date at job start Tue Mar 31 2020 15:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09000 * 115.54753 * 325.72485 * 14 12 11 16 16 C 1.52997 * 117.49937 * 111.39164 * 14 12 11 17 17 C 1.52997 * 117.49819 * 180.02562 * 14 12 11 18 18 H 1.09005 * 117.49966 * 0.02562 * 17 14 12 19 19 C 1.50701 * 117.49867 * 145.02096 * 17 14 12 20 20 C 1.38223 * 119.98569 * 59.72376 * 19 17 14 21 21 C 1.38363 * 120.01062 * 179.72758 * 20 19 17 22 22 Cl 1.73596 * 120.00573 * 180.27391 * 21 20 19 23 23 C 1.38331 * 119.98133 * 0.56943 * 21 20 19 24 24 C 1.38332 * 119.97899 * 359.70682 * 23 21 20 25 25 Cl 1.73596 * 120.00545 * 180.02562 * 24 23 21 26 26 C 1.38221 * 119.98319 * 240.00299 * 19 17 14 27 27 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 29 29 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 30 30 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 31 31 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 32 32 H 0.97000 * 119.99832 * 0.02562 * 11 10 9 33 33 H 1.09004 * 117.50108 * 214.97919 * 16 14 12 34 34 H 1.09001 * 117.49797 * 359.97438 * 16 14 12 35 35 H 1.07994 * 119.99262 * 0.02562 * 20 19 17 36 36 H 1.08014 * 120.00623 * 179.68247 * 23 21 20 37 37 H 1.07993 * 119.99781 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1868 -6.0980 0.0031 13 8 3.3996 -6.0979 0.0027 14 6 1.4333 -7.4031 0.0031 15 1 0.4942 -7.4037 0.5566 16 6 1.5093 -8.2628 -1.2602 17 6 2.2554 -8.6934 0.0045 18 1 3.3413 -8.5984 0.0057 19 6 1.7050 -9.8684 0.7709 20 6 0.4730 -10.3970 0.4341 21 6 -0.0303 -11.4794 1.1338 22 17 -1.5743 -12.1477 0.7061 23 6 0.6944 -12.0249 2.1782 24 6 1.9246 -11.4918 2.5186 25 17 2.8349 -12.1762 3.8287 26 6 2.4297 -10.4133 1.8142 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8896 30 1 2.8727 -3.6047 -0.8877 31 1 2.8713 -3.6038 0.8923 32 1 0.5428 -4.9307 0.0016 33 1 0.6204 -8.8294 -1.5377 34 1 2.1040 -7.8842 -2.0916 35 1 -0.0945 -9.9682 -0.3785 36 1 0.2995 -12.8666 2.7281 37 1 3.3903 -9.9973 2.0796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273002006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:17 Heat of formation + Delta-G solvation = -39.167865 kcal Electronic energy + Delta-G solvation = -21340.070150 eV Core-core repulsion = 17747.147448 eV Total energy + Delta-G solvation = -3592.922702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44982 -40.43157 -38.08311 -37.79976 -37.05501 -36.59324 -35.03900 -32.08299 -31.72465 -31.24981 -26.99646 -25.37592 -24.86776 -23.76494 -23.07489 -21.81084 -21.13068 -19.11559 -18.66338 -18.05955 -17.12005 -16.85738 -16.64311 -16.56903 -15.79494 -15.63466 -15.44717 -15.32130 -15.01460 -14.83737 -14.24813 -13.72684 -13.70258 -13.39137 -13.22333 -13.06636 -12.89574 -12.80222 -12.47735 -12.30072 -12.12138 -12.07227 -11.99636 -11.88328 -11.59523 -11.52840 -11.14377 -10.72884 -10.59066 -10.13476 -9.82857 -9.80269 -8.72901 -6.44227 -0.12077 -0.11624 0.74253 1.19985 1.42442 1.54107 1.61360 1.81313 2.05914 2.29201 2.56682 2.88728 3.12382 3.28788 3.59379 3.75826 3.79865 3.85126 3.89484 4.06289 4.11414 4.28940 4.30708 4.32326 4.49158 4.65478 4.67306 4.88283 4.93020 4.97236 5.03723 5.08455 5.29289 5.31455 5.38488 5.41758 5.92271 6.12696 6.47387 6.58619 7.18493 7.35776 8.69495 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002045 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.956881 B =13685.322163 C =14430.134229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.032 4.032 3 Si 1.116 2.884 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.624 4.624 8 H 0.050 0.950 9 C 0.007 3.993 10 C 0.147 3.853 11 N -0.714 5.714 12 C 0.533 3.467 13 O -0.589 6.589 14 C -0.177 4.177 15 H 0.150 0.850 16 C -0.122 4.122 17 C -0.087 4.087 18 H 0.118 0.882 19 C -0.025 4.025 20 C -0.103 4.103 21 C -0.025 4.025 22 Cl -0.052 7.052 23 C -0.108 4.108 24 C -0.027 4.027 25 Cl -0.057 7.057 26 C -0.104 4.104 27 H 0.259 0.741 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.412 0.588 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -29.053 1.871 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.230 4.230 3 Si 0.937 3.063 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.663 4.663 8 H 0.068 0.932 9 C -0.030 4.030 10 C 0.024 3.976 11 N -0.364 5.364 12 C 0.321 3.679 13 O -0.470 6.470 14 C -0.198 4.198 15 H 0.167 0.833 16 C -0.158 4.158 17 C -0.106 4.106 18 H 0.136 0.864 19 C -0.026 4.026 20 C -0.121 4.121 21 C -0.052 4.052 22 Cl -0.023 7.023 23 C -0.127 4.127 24 C -0.054 4.054 25 Cl -0.028 7.028 26 C -0.122 4.122 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.248 0.752 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.059 -27.526 1.957 27.616 hybrid contribution -0.240 -1.560 0.309 1.608 sum -1.299 -29.086 2.266 29.203 Atomic orbital electron populations 1.70925 1.07762 1.30127 1.48114 1.27355 0.96608 1.06593 0.92463 0.82937 0.74166 0.71156 0.78015 1.19486 1.19576 1.20657 1.22319 0.94794 0.93107 1.56050 0.93209 1.19296 0.94935 0.93133 0.95684 1.21057 0.94740 0.82039 0.99808 1.46073 1.11146 1.05379 1.73836 1.20296 0.87263 0.85509 0.74851 1.90660 1.15854 1.88269 1.52188 1.22354 1.02375 0.87788 1.07310 0.83280 1.23334 1.03425 0.99049 0.90039 1.20947 0.99077 0.90230 1.00318 0.86436 1.18874 0.93643 0.95194 0.94906 1.21247 0.95439 0.94896 1.00507 1.20733 0.89387 0.97189 0.97852 1.98403 1.26709 1.84723 1.92462 1.21070 0.92951 1.01444 0.97208 1.20736 0.93989 0.97145 0.93505 1.98398 1.73659 1.84054 1.46718 1.21133 1.01433 0.94886 0.94787 0.93131 0.97634 0.97467 0.93515 0.93731 0.75218 0.84099 0.87822 0.82134 0.82626 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.65 21.45 0.29 -55.61 16 2 C -0.03 -1.80 5.46 84.66 0.46 -1.34 16 3 Si 1.12 49.42 29.90 68.60 2.05 51.48 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.62 -35.09 9.11 25.60 0.23 -34.86 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.01 0.34 4.40 29.85 0.13 0.47 16 10 C 0.15 6.27 5.61 86.38 0.48 6.76 16 11 N -0.71 -23.57 5.56 -463.05 -2.57 -26.15 16 12 C 0.53 16.63 7.61 87.66 0.67 17.30 16 13 O -0.59 -23.23 16.26 -3.02 -0.05 -23.27 16 14 C -0.18 -3.55 5.82 -11.54 -0.07 -3.62 16 15 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.12 -1.81 9.56 30.60 0.29 -1.52 16 17 C -0.09 -1.57 5.55 -11.53 -0.06 -1.64 16 18 H 0.12 2.56 7.67 -2.38 -0.02 2.54 16 19 C -0.03 -0.40 5.61 -19.87 -0.11 -0.51 16 20 C -0.10 -1.35 9.08 22.30 0.20 -1.15 16 21 C -0.02 -0.34 6.32 22.32 0.14 -0.20 16 22 Cl -0.05 -0.67 28.96 -2.72 -0.08 -0.75 16 23 C -0.11 -1.50 9.61 22.31 0.21 -1.29 16 24 C -0.03 -0.42 6.32 22.32 0.14 -0.28 16 25 Cl -0.06 -0.89 28.96 -2.72 -0.08 -0.97 16 26 C -0.10 -1.72 9.52 22.29 0.21 -1.51 16 27 H 0.26 15.44 7.22 -92.70 -0.67 14.77 16 28 H 0.01 0.27 8.01 -2.39 -0.02 0.26 16 29 H 0.01 0.36 8.01 -2.39 -0.02 0.34 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 11.31 8.47 -92.71 -0.79 10.52 16 33 H 0.14 1.20 6.18 -2.38 -0.01 1.19 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.16 1.46 6.02 -2.91 -0.02 1.45 16 36 H 0.16 1.73 8.06 -2.90 -0.02 1.70 16 37 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -68.32 352.20 2.93 -65.39 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.43 Total: 13.27 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 2.94 Total: -23.38 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.28 Total: -81.75 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.48 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.16 Total: -1.72 kcal Total: -68.32 2.93 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.218 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds