Wall clock time and date at job start Tue Mar 31 2020 15:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99520 * 2 1 4 4 H 1.48495 * 109.47417 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.46924 * 30.00498 * 3 2 1 6 6 H 1.48507 * 109.46677 * 150.00219 * 3 2 1 7 7 C 1.37875 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99719 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47082 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46772 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99623 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00184 * 180.02562 * 12 11 10 15 15 H 1.09002 * 115.55088 * 34.41183 * 14 12 11 16 16 C 1.53005 * 117.49691 * 248.74253 * 14 12 11 17 17 C 1.52999 * 59.99973 * 252.48494 * 16 14 12 18 18 H 1.08995 * 117.49529 * 107.48826 * 17 16 14 19 19 C 1.50693 * 117.50064 * 252.51042 * 17 16 14 20 20 C 1.38224 * 119.98612 * 8.35159 * 19 17 16 21 21 C 1.38359 * 120.01221 * 179.72921 * 20 19 17 22 22 Cl 1.73603 * 120.00789 * 180.27525 * 21 20 19 23 23 C 1.38333 * 119.98995 * 0.56517 * 21 20 19 24 24 C 1.38337 * 119.96822 * 359.70702 * 23 21 20 25 25 Cl 1.73594 * 120.00303 * 179.97438 * 24 23 21 26 26 C 1.38220 * 119.98787 * 188.62453 * 19 17 16 27 27 H 0.96996 * 120.00607 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47271 * 59.99772 * 9 7 2 29 29 H 1.08995 * 109.47572 * 299.99566 * 9 7 2 30 30 H 1.08998 * 109.46760 * 60.00141 * 10 9 7 31 31 H 1.09001 * 109.47248 * 300.00117 * 10 9 7 32 32 H 0.97001 * 120.00821 * 0.02562 * 11 10 9 33 33 H 1.09004 * 117.49602 * 359.97438 * 16 14 12 34 34 H 1.09004 * 117.49360 * 144.99546 * 16 14 12 35 35 H 1.08002 * 119.99080 * 359.97438 * 20 19 17 36 36 H 1.08000 * 120.01556 * 179.72648 * 23 21 20 37 37 H 1.07995 * 119.99703 * 0.02562 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4866 -2.6362 -0.0022 12 6 6.1606 -3.8034 -0.0028 13 8 5.5542 -4.8538 -0.0019 14 6 7.6676 -3.8033 -0.0034 15 1 8.1380 -2.9922 0.5524 16 6 8.3735 -4.2950 -1.2688 17 6 8.3746 -5.1602 -0.0069 18 1 7.7497 -6.0532 -0.0085 19 6 9.6678 -5.2729 0.7584 20 6 10.7447 -4.4768 0.4162 21 6 11.9306 -4.5759 1.1221 22 17 13.2807 -3.5709 0.6967 23 6 12.0422 -5.4801 2.1630 24 6 10.9658 -6.2805 2.5014 25 17 11.1051 -7.4160 3.8071 26 6 9.7785 -6.1763 1.7987 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6802 0.8889 29 1 3.8745 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9717 -1.7962 -0.0025 33 1 7.7479 -4.6189 -2.1005 34 1 9.3083 -3.8072 -1.5453 35 1 10.6592 -3.7746 -0.3999 36 1 12.9690 -5.5609 2.7115 37 1 8.9384 -6.8015 2.0626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273002009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:21 Heat of formation + Delta-G solvation = -14.057335 kcal Electronic energy + Delta-G solvation = -21362.899562 eV Core-core repulsion = 17771.065734 eV Total energy + Delta-G solvation = -3591.833828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57841 -39.41060 -37.25265 -37.19652 -36.20854 -34.95962 -32.82846 -31.37703 -31.04984 -30.18749 -25.88724 -24.54987 -23.61163 -22.98659 -21.08014 -20.81804 -19.85362 -18.06701 -17.17489 -16.92170 -16.21565 -16.09191 -15.40847 -15.23764 -14.84572 -14.60697 -14.40955 -14.19219 -13.87502 -13.32954 -12.83801 -12.78800 -12.63851 -12.48801 -12.40673 -12.13739 -11.80961 -11.53098 -11.43231 -11.40018 -11.26013 -10.85852 -10.77816 -10.43418 -10.30692 -9.99872 -9.63273 -9.35664 -9.21085 -9.12132 -8.68393 -8.58858 -6.13748 -4.14222 0.49671 0.51860 1.35068 1.80948 2.55497 2.89850 3.22990 3.30789 3.31845 3.40226 3.70481 4.04730 4.35082 4.39803 4.41643 4.48612 4.54148 4.65915 4.73681 4.93430 5.04655 5.15449 5.19054 5.33010 5.54918 5.57667 5.64268 5.70265 5.98151 6.04140 6.06775 6.15399 6.51083 6.68171 7.08786 7.18895 7.63243 7.82866 8.39635 8.48661 8.90362 9.46149 10.99250 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.002180 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.131220 B =12839.693797 C =13608.573713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.720 5.720 12 C 0.535 3.465 13 O -0.545 6.545 14 C -0.171 4.171 15 H 0.126 0.874 16 C -0.142 4.142 17 C -0.091 4.091 18 H 0.135 0.865 19 C -0.021 4.021 20 C -0.108 4.108 21 C -0.020 4.020 22 Cl -0.058 7.058 23 C -0.109 4.109 24 C -0.020 4.020 25 Cl -0.056 7.056 26 C -0.095 4.095 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.307 -10.168 2.168 31.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.008 3.992 11 N -0.369 5.369 12 C 0.320 3.680 13 O -0.424 6.424 14 C -0.192 4.192 15 H 0.143 0.857 16 C -0.179 4.179 17 C -0.109 4.109 18 H 0.153 0.847 19 C -0.022 4.022 20 C -0.127 4.127 21 C -0.047 4.047 22 Cl -0.029 7.029 23 C -0.129 4.129 24 C -0.047 4.047 25 Cl -0.027 7.027 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 28.796 -10.803 2.256 30.838 hybrid contribution 0.699 1.438 0.183 1.609 sum 29.495 -9.365 2.440 31.042 Atomic orbital electron populations 1.69900 1.06294 1.27095 1.50316 1.25005 0.94773 0.99168 0.94344 0.86749 0.80264 0.83530 0.78509 1.20210 1.21251 1.19076 1.20910 0.88627 0.94908 1.51776 0.90617 1.19795 0.98033 0.91275 0.96861 1.21542 0.75785 1.00237 1.01684 1.46247 1.09171 1.07773 1.73695 1.19476 0.87681 0.84252 0.76613 1.90695 1.69878 1.31434 1.50355 1.22436 0.93155 0.99052 1.04586 0.85652 1.23168 1.02032 1.01496 0.91214 1.21042 0.94493 0.96029 0.99379 0.84734 1.18996 0.93674 0.94750 0.94771 1.21093 0.90975 1.00308 1.00276 1.20672 0.90138 0.96089 0.97785 1.98398 1.44273 1.67602 1.92588 1.20894 0.99199 0.95345 0.97413 1.20706 0.95266 0.95297 0.93419 1.98400 1.98116 1.59184 1.47004 1.21047 0.96779 0.98981 0.94576 0.92516 0.95985 0.96401 0.91890 0.91850 0.76910 0.87179 0.87389 0.83927 0.83855 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.22 5.56 -60.29 -0.33 -11.56 16 12 C 0.53 8.07 7.61 -10.98 -0.08 7.99 16 13 O -0.55 -10.32 16.26 5.55 0.09 -10.23 16 14 C -0.17 -1.77 5.82 -91.77 -0.53 -2.30 16 15 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.14 -1.17 9.56 -26.73 -0.26 -1.43 16 17 C -0.09 -0.85 5.55 -91.77 -0.51 -1.36 16 18 H 0.13 1.43 7.67 -51.93 -0.40 1.03 16 19 C -0.02 -0.18 5.61 -104.64 -0.59 -0.77 16 20 C -0.11 -0.82 9.09 -39.54 -0.36 -1.18 16 21 C -0.02 -0.15 6.32 -39.50 -0.25 -0.40 16 22 Cl -0.06 -0.42 28.96 -51.86 -1.50 -1.92 16 23 C -0.11 -0.84 9.62 -39.51 -0.38 -1.22 16 24 C -0.02 -0.16 6.32 -39.50 -0.25 -0.41 16 25 Cl -0.06 -0.45 28.96 -51.86 -1.50 -1.95 16 26 C -0.10 -0.81 9.52 -39.54 -0.38 -1.19 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.40 5.10 8.47 -40.82 -0.35 4.75 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 0.64 6.17 -51.93 -0.32 0.32 16 35 H 0.14 0.87 6.01 -52.49 -0.32 0.56 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.55 349.91 -10.29 -41.84 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.27 Total: 2.06 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.15 Total: -13.28 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.44 Total: -37.90 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -3.00 Total: -3.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.55 -10.29 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.784 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds