Wall clock time and date at job start Tue Mar 31 2020 15:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99520 * 2 1 4 4 H 1.48495 * 109.47417 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.46924 * 30.00498 * 3 2 1 6 6 H 1.48507 * 109.46677 * 150.00219 * 3 2 1 7 7 C 1.37875 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99719 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47082 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46772 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99623 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00184 * 180.02562 * 12 11 10 15 15 H 1.09002 * 115.55088 * 34.41183 * 14 12 11 16 16 C 1.53005 * 117.49691 * 248.74253 * 14 12 11 17 17 C 1.52999 * 59.99973 * 252.48494 * 16 14 12 18 18 H 1.08995 * 117.49529 * 107.48826 * 17 16 14 19 19 C 1.50693 * 117.50064 * 252.51042 * 17 16 14 20 20 C 1.38224 * 119.98612 * 8.35159 * 19 17 16 21 21 C 1.38359 * 120.01221 * 179.72921 * 20 19 17 22 22 Cl 1.73603 * 120.00789 * 180.27525 * 21 20 19 23 23 C 1.38333 * 119.98995 * 0.56517 * 21 20 19 24 24 C 1.38337 * 119.96822 * 359.70702 * 23 21 20 25 25 Cl 1.73594 * 120.00303 * 179.97438 * 24 23 21 26 26 C 1.38220 * 119.98787 * 188.62453 * 19 17 16 27 27 H 0.96996 * 120.00607 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47271 * 59.99772 * 9 7 2 29 29 H 1.08995 * 109.47572 * 299.99566 * 9 7 2 30 30 H 1.08998 * 109.46760 * 60.00141 * 10 9 7 31 31 H 1.09001 * 109.47248 * 300.00117 * 10 9 7 32 32 H 0.97001 * 120.00821 * 0.02562 * 11 10 9 33 33 H 1.09004 * 117.49602 * 359.97438 * 16 14 12 34 34 H 1.09004 * 117.49360 * 144.99546 * 16 14 12 35 35 H 1.08002 * 119.99080 * 359.97438 * 20 19 17 36 36 H 1.08000 * 120.01556 * 179.72648 * 23 21 20 37 37 H 1.07995 * 119.99703 * 0.02562 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4866 -2.6362 -0.0022 12 6 6.1606 -3.8034 -0.0028 13 8 5.5542 -4.8538 -0.0019 14 6 7.6676 -3.8033 -0.0034 15 1 8.1380 -2.9922 0.5524 16 6 8.3735 -4.2950 -1.2688 17 6 8.3746 -5.1602 -0.0069 18 1 7.7497 -6.0532 -0.0085 19 6 9.6678 -5.2729 0.7584 20 6 10.7447 -4.4768 0.4162 21 6 11.9306 -4.5759 1.1221 22 17 13.2807 -3.5709 0.6967 23 6 12.0422 -5.4801 2.1630 24 6 10.9658 -6.2805 2.5014 25 17 11.1051 -7.4160 3.8071 26 6 9.7785 -6.1763 1.7987 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6802 0.8889 29 1 3.8745 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9717 -1.7962 -0.0025 33 1 7.7479 -4.6189 -2.1005 34 1 9.3083 -3.8072 -1.5453 35 1 10.6592 -3.7746 -0.3999 36 1 12.9690 -5.5609 2.7115 37 1 8.9384 -6.8015 2.0626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273002009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:20 Heat of formation + Delta-G solvation = -32.282648 kcal Electronic energy + Delta-G solvation = -21363.689871 eV Core-core repulsion = 17771.065734 eV Total energy + Delta-G solvation = -3592.624137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39918 -40.38551 -38.03704 -37.77705 -36.97704 -36.44642 -34.78735 -32.25874 -31.83786 -31.55203 -27.45872 -25.32171 -24.72175 -23.69350 -22.58840 -21.77267 -21.00301 -19.05032 -18.72638 -18.08687 -16.99531 -16.74980 -16.54890 -16.50109 -16.22825 -15.70284 -15.33327 -15.16976 -14.98078 -14.76520 -14.59182 -13.68781 -13.37098 -13.35672 -13.18426 -13.05585 -13.03708 -12.77884 -12.46250 -12.20677 -12.16295 -12.04333 -11.97396 -11.76316 -11.55050 -11.51350 -11.48484 -10.88699 -10.78866 -10.05835 -9.80371 -9.77251 -8.30101 -6.37652 -0.09398 -0.08911 0.76589 1.22313 1.39521 1.42330 1.49062 1.53486 2.11548 2.34075 2.37035 2.93320 3.05025 3.32753 3.64143 3.81233 3.84684 3.88004 3.92651 4.09488 4.17164 4.32183 4.36303 4.42321 4.52584 4.71433 4.74638 4.93038 4.96075 5.01232 5.07285 5.15273 5.32863 5.40215 5.43189 5.44713 5.64480 6.21869 6.61174 6.71269 7.26657 7.28621 8.86709 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.002180 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.131220 B =12839.693797 C =13608.573713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.012 4.012 10 C 0.144 3.856 11 N -0.711 5.711 12 C 0.532 3.468 13 O -0.591 6.591 14 C -0.174 4.174 15 H 0.153 0.847 16 C -0.121 4.121 17 C -0.091 4.091 18 H 0.115 0.885 19 C -0.024 4.024 20 C -0.102 4.102 21 C -0.025 4.025 22 Cl -0.052 7.052 23 C -0.108 4.108 24 C -0.027 4.027 25 Cl -0.059 7.059 26 C -0.104 4.104 27 H 0.268 0.732 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.415 0.585 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.964 -8.257 1.797 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.362 5.362 12 C 0.319 3.681 13 O -0.472 6.472 14 C -0.195 4.195 15 H 0.171 0.829 16 C -0.158 4.158 17 C -0.110 4.110 18 H 0.133 0.867 19 C -0.025 4.025 20 C -0.120 4.120 21 C -0.051 4.051 22 Cl -0.023 7.023 23 C -0.127 4.127 24 C -0.054 4.054 25 Cl -0.030 7.030 26 C -0.123 4.123 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 32.501 -8.893 1.885 33.749 hybrid contribution -0.486 0.708 0.303 0.911 sum 32.015 -8.185 2.188 33.117 Atomic orbital electron populations 1.70077 1.08624 1.28451 1.51964 1.26105 0.95701 1.03946 0.93664 0.85527 0.79678 0.77225 0.79373 1.18895 1.21385 1.15854 1.21268 0.91690 0.93326 1.51583 0.95399 1.19648 0.94334 0.92909 0.98121 1.21027 0.78659 0.98415 0.99870 1.45997 1.07205 1.09172 1.73819 1.20301 0.89777 0.83073 0.74902 1.90680 1.71381 1.33000 1.52141 1.22364 0.89364 1.00685 1.07082 0.82927 1.23329 1.02574 0.99903 0.90019 1.20935 0.94545 0.94930 1.00560 0.86675 1.18875 0.93511 0.95304 0.94813 1.21251 0.90325 1.00012 1.00397 1.20735 0.90437 0.96168 0.97809 1.98404 1.44004 1.67385 1.92521 1.21063 0.99406 0.94901 0.97377 1.20743 0.95452 0.95644 0.93577 1.98398 1.98116 1.59331 1.47119 1.21135 0.96974 0.99280 0.94932 0.92334 0.94505 0.94470 0.93782 0.93983 0.74795 0.87885 0.84038 0.81963 0.82718 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.80 16 2 C 0.00 0.16 5.47 84.65 0.46 0.63 16 3 Si 0.96 41.74 27.47 68.60 1.88 43.62 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.54 -30.62 9.66 25.60 0.25 -30.37 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 10 C 0.14 5.76 5.61 86.38 0.48 6.24 16 11 N -0.71 -21.08 5.56 -463.04 -2.57 -23.65 16 12 C 0.53 15.54 7.61 87.66 0.67 16.21 16 13 O -0.59 -22.79 16.26 -3.06 -0.05 -22.84 16 14 C -0.17 -3.14 5.82 -11.54 -0.07 -3.21 16 15 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.12 -1.62 9.56 30.60 0.29 -1.33 16 17 C -0.09 -1.54 5.55 -11.54 -0.06 -1.61 16 18 H 0.12 2.44 7.67 -2.39 -0.02 2.42 16 19 C -0.02 -0.36 5.61 -19.87 -0.11 -0.47 16 20 C -0.10 -1.21 9.09 22.30 0.20 -1.01 16 21 C -0.02 -0.31 6.32 22.32 0.14 -0.17 16 22 Cl -0.05 -0.62 28.96 -2.72 -0.08 -0.70 16 23 C -0.11 -1.44 9.62 22.32 0.21 -1.23 16 24 C -0.03 -0.41 6.32 22.32 0.14 -0.27 16 25 Cl -0.06 -0.89 28.96 -2.72 -0.08 -0.97 16 26 C -0.10 -1.67 9.52 22.30 0.21 -1.45 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.04 1.51 7.20 -2.38 -0.02 1.49 16 29 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.42 9.32 8.47 -92.71 -0.79 8.53 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 0.96 6.17 -2.38 -0.01 0.95 16 35 H 0.16 1.23 6.01 -2.91 -0.02 1.21 16 36 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -71.32 349.91 2.63 -68.70 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.27 Total: 13.09 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 2.95 Total: -18.46 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.27 Total: -82.44 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.16 Total: -1.67 kcal Total: -71.32 2.63 -68.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.413 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds