Wall clock time and date at job start Tue Mar 31 2020 15:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48509 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47324 * 299.99947 * 3 2 1 6 6 H 1.48500 * 109.47443 * 60.00319 * 3 2 1 7 7 C 1.37882 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46988 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46868 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99900 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99953 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00020 * 180.02562 * 12 11 10 15 15 H 1.09006 * 115.56171 * 325.69155 * 14 12 11 16 16 C 1.53007 * 117.50120 * 111.37849 * 14 12 11 17 17 C 1.53000 * 117.50043 * 180.02562 * 14 12 11 18 18 H 1.08995 * 117.51778 * 359.97438 * 17 14 12 19 19 C 1.50700 * 117.49958 * 145.01915 * 17 14 12 20 20 C 1.38253 * 119.99957 * 60.01697 * 19 17 14 21 21 C 1.38222 * 120.03603 * 180.25739 * 20 19 17 22 22 C 1.38251 * 120.03907 * 359.44047 * 21 20 19 23 23 C 1.38302 * 119.99727 * 0.55521 * 22 21 20 24 24 Cl 1.73601 * 120.01748 * 179.74387 * 23 22 21 25 25 C 1.38304 * 120.00038 * 239.99214 * 19 17 14 26 26 Cl 1.73593 * 120.01736 * 0.04245 * 25 19 17 27 27 H 0.97005 * 119.99484 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46740 * 59.99652 * 9 7 2 29 29 H 1.09000 * 109.46779 * 300.00190 * 9 7 2 30 30 H 1.09000 * 109.47584 * 60.00267 * 10 9 7 31 31 H 1.09004 * 109.47179 * 299.99502 * 10 9 7 32 32 H 0.96996 * 120.00279 * 0.02562 * 11 10 9 33 33 H 1.08996 * 117.49514 * 0.02562 * 16 14 12 34 34 H 1.09001 * 117.51853 * 214.96985 * 16 14 12 35 35 H 1.08002 * 119.97828 * 359.97142 * 20 19 17 36 36 H 1.08000 * 119.97753 * 179.70407 * 21 20 19 37 37 H 1.07994 * 119.99835 * 180.27811 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0027 13 8 3.3994 -6.0980 -0.0040 14 6 1.4330 -7.4031 -0.0026 15 1 0.4950 -7.4046 0.5527 16 6 1.5068 -8.2616 -1.2670 17 6 2.2551 -8.6935 -0.0037 18 1 3.3409 -8.5989 -0.0049 19 6 1.7057 -9.8691 0.7626 20 6 0.4757 -10.4016 0.4235 21 6 -0.0312 -11.4765 1.1293 22 6 0.6963 -12.0277 2.1676 23 6 1.9269 -11.4964 2.5081 24 17 2.8379 -12.1840 3.8162 25 6 2.4323 -10.4157 1.8048 26 17 3.9766 -9.7473 2.2313 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8726 -3.6048 0.8877 31 1 2.8712 -3.6040 -0.8923 32 1 0.5427 -4.9308 -0.0005 33 1 2.1007 -7.8825 -2.0987 34 1 0.6176 -8.8281 -1.5437 35 1 -0.0914 -9.9744 -0.3904 36 1 -0.9943 -11.8886 0.8666 37 1 0.3016 -12.8704 2.7157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273032911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:29 Heat of formation + Delta-G solvation = -33.894438 kcal Electronic energy + Delta-G solvation = -21618.616134 eV Core-core repulsion = 18025.922105 eV Total energy + Delta-G solvation = -3592.694029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36901 -40.33183 -38.00467 -37.53078 -37.17857 -36.44727 -34.81780 -32.01976 -31.63988 -31.33781 -27.29793 -25.34848 -24.82634 -23.62227 -22.75855 -21.72802 -21.00812 -18.86903 -18.46713 -18.09233 -16.99569 -16.76557 -16.48398 -16.47242 -16.42312 -15.65378 -15.19929 -15.03833 -14.99174 -14.68372 -14.31265 -13.77368 -13.23422 -13.21625 -13.01926 -12.97665 -12.93307 -12.65021 -12.54865 -12.48008 -12.26597 -11.96282 -11.79372 -11.76688 -11.59907 -11.55467 -11.44427 -10.85328 -10.61928 -10.02947 -9.74420 -9.68799 -8.25531 -6.35701 -0.04740 -0.00602 0.82166 1.24027 1.39853 1.41056 1.50619 1.53964 2.16971 2.37947 2.46038 2.92676 3.09246 3.33708 3.61283 3.79867 3.84627 3.95747 4.09425 4.18849 4.24867 4.33934 4.47109 4.48925 4.70521 4.75886 4.83732 4.91692 5.01335 5.03114 5.25719 5.29060 5.36054 5.48934 5.57215 5.65604 5.77827 6.15303 6.63404 6.77520 7.28232 7.33637 8.86472 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002204 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.581573 B =12703.472629 C =13170.153275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.141 3.859 11 N -0.712 5.712 12 C 0.530 3.470 13 O -0.590 6.590 14 C -0.174 4.174 15 H 0.153 0.847 16 C -0.113 4.113 17 C -0.102 4.102 18 H 0.105 0.895 19 C -0.040 4.040 20 C -0.099 4.099 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.044 4.044 24 Cl -0.060 7.060 25 C -0.049 4.049 26 Cl -0.066 7.066 27 H 0.266 0.734 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -29.269 1.269 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.362 5.362 12 C 0.317 3.683 13 O -0.471 6.471 14 C -0.195 4.195 15 H 0.171 0.829 16 C -0.150 4.150 17 C -0.120 4.120 18 H 0.123 0.877 19 C -0.041 4.041 20 C -0.117 4.117 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.072 4.072 24 Cl -0.031 7.031 25 C -0.077 4.077 26 Cl -0.037 7.037 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.249 0.751 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.278 -29.125 1.434 29.344 hybrid contribution 0.666 1.329 0.520 1.575 sum -2.613 -27.796 1.954 27.986 Atomic orbital electron populations 1.70057 1.07455 1.27958 1.51005 1.25853 0.95815 1.03023 0.94409 0.85414 0.78901 0.78853 0.77983 1.19162 1.20052 1.20183 1.21493 0.93510 0.92038 1.51521 0.92544 1.19124 0.94167 0.91606 0.96460 1.21213 0.95080 0.82431 0.99587 1.46058 1.11160 1.05324 1.73666 1.20324 0.87294 0.85638 0.74999 1.90664 1.15996 1.88281 1.52193 1.22361 1.02201 0.87632 1.07300 0.82946 1.23359 1.03335 0.98748 0.89581 1.20960 0.98922 0.90965 1.01190 0.87714 1.18990 0.95195 0.95899 0.94019 1.21551 0.93316 0.96177 1.00626 1.21658 1.00957 0.94638 0.93191 1.21440 0.91247 1.00949 0.98527 1.20985 0.95819 0.96536 0.93857 1.98389 1.74258 1.83592 1.46865 1.20865 0.90095 0.97486 0.99209 1.98404 1.27944 1.84886 1.92477 0.92488 0.97029 0.97295 0.94014 0.93591 0.75144 0.88163 0.83080 0.81190 0.80402 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -30.76 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 6.12 5.61 86.38 0.48 6.61 16 11 N -0.71 -24.49 5.56 -463.05 -2.57 -27.07 16 12 C 0.53 17.64 7.61 87.66 0.67 18.30 16 13 O -0.59 -24.90 16.26 -3.04 -0.05 -24.95 16 14 C -0.17 -3.79 5.82 -11.54 -0.07 -3.86 16 15 H 0.15 2.48 8.14 -2.38 -0.02 2.46 16 16 C -0.11 -1.78 9.57 30.61 0.29 -1.49 16 17 C -0.10 -2.17 5.06 -11.52 -0.06 -2.23 16 18 H 0.10 2.93 6.69 -2.39 -0.02 2.91 16 19 C -0.04 -0.72 5.61 -19.84 -0.11 -0.83 16 20 C -0.10 -1.01 9.30 22.27 0.21 -0.80 16 21 C -0.09 -0.65 10.04 22.27 0.22 -0.43 16 22 C -0.10 -1.15 9.83 22.29 0.22 -0.93 16 23 C -0.04 -0.79 6.32 22.34 0.14 -0.65 16 24 Cl -0.06 -1.12 27.96 -2.72 -0.08 -1.20 16 25 C -0.05 -1.04 6.32 22.34 0.14 -0.90 16 26 Cl -0.07 -1.72 26.43 -2.72 -0.07 -1.79 16 27 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 28 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.41 11.81 8.47 -92.71 -0.79 11.03 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.15 1.07 6.18 -2.39 -0.01 1.05 16 35 H 0.17 0.69 6.02 -2.91 -0.02 0.67 16 36 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 37 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -72.48 349.48 2.86 -69.62 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.33 Total: 8.80 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 2.99 Total: -15.48 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.29 Total: -80.79 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.15 Total: -2.98 kcal Total: -72.48 2.86 -69.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds