Wall clock time and date at job start Tue Mar 31 2020 15:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99913 * 3 2 1 5 5 H 1.48498 * 109.47199 * 30.00286 * 3 2 1 6 6 H 1.48508 * 109.47033 * 150.00009 * 3 2 1 7 7 C 1.37877 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00431 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47142 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47209 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00212 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99636 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00145 * 180.02562 * 12 11 10 15 15 H 1.09002 * 115.54932 * 325.58291 * 14 12 11 16 16 C 1.53002 * 117.49992 * 111.25454 * 14 12 11 17 17 C 1.53000 * 117.50034 * 179.91227 * 14 12 11 18 18 H 1.08999 * 117.49942 * 144.97208 * 17 14 12 19 19 C 1.50706 * 117.49681 * 359.97438 * 17 14 12 20 20 C 1.38243 * 120.00080 * 299.72460 * 19 17 14 21 21 C 1.38226 * 120.04177 * 179.77122 * 20 19 17 22 22 C 1.38251 * 120.02950 * 0.50360 * 21 20 19 23 23 C 1.38295 * 120.00472 * 359.74665 * 22 21 20 24 24 Cl 1.73603 * 120.02081 * 179.97438 * 23 22 21 25 25 C 1.38304 * 120.00009 * 119.99888 * 19 17 14 26 26 Cl 1.73605 * 120.01880 * 359.95679 * 25 19 17 27 27 H 0.96996 * 120.00104 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47290 * 60.00196 * 9 7 2 29 29 H 1.09001 * 109.47095 * 299.99859 * 9 7 2 30 30 H 1.08997 * 109.47080 * 60.00347 * 10 9 7 31 31 H 1.08997 * 109.47589 * 300.00363 * 10 9 7 32 32 H 0.97004 * 119.99847 * 0.02562 * 11 10 9 33 33 H 1.09000 * 117.49996 * 215.00670 * 16 14 12 34 34 H 1.08999 * 117.49664 * 0.02562 * 16 14 12 35 35 H 1.08009 * 119.98182 * 0.02562 * 20 19 17 36 36 H 1.07987 * 119.98555 * 180.23157 * 21 20 19 37 37 H 1.08003 * 119.99452 * 179.77334 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0016 13 8 3.3996 -6.0979 -0.0020 14 6 1.4333 -7.4031 -0.0016 15 1 0.4959 -7.4047 0.5546 16 6 1.5057 -8.2607 -1.2666 17 6 2.2554 -8.6935 -0.0041 18 1 1.8590 -9.5438 0.5507 19 6 3.7567 -8.5620 -0.0071 20 6 4.3914 -7.9096 -1.0476 21 6 5.7680 -7.7845 -1.0489 22 6 6.5124 -8.3207 -0.0146 23 6 5.8795 -8.9781 1.0245 24 17 6.8139 -9.6521 2.3231 25 6 4.5000 -9.0990 1.0283 26 17 3.7039 -9.9235 2.3322 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8727 -3.6047 0.8877 31 1 2.8714 -3.6039 -0.8922 32 1 0.5429 -4.9308 -0.0005 33 1 0.6159 -8.8264 -1.5427 34 1 2.0987 -7.8811 -2.0986 35 1 3.8110 -7.4939 -1.8581 36 1 6.2626 -7.2714 -1.8602 37 1 7.5883 -8.2257 -0.0180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273032913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:32 Heat of formation + Delta-G solvation = -21.158204 kcal Electronic energy + Delta-G solvation = -22419.202244 eV Core-core repulsion = 18827.060500 eV Total energy + Delta-G solvation = -3592.141745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56465 -39.95243 -37.89161 -37.47712 -37.11150 -36.35017 -34.78704 -31.97944 -31.58521 -31.18778 -27.25331 -25.26609 -24.78199 -23.66911 -22.70347 -21.77557 -20.87794 -18.93148 -18.48536 -17.67475 -16.97763 -16.66162 -16.50909 -16.38224 -16.24963 -15.61931 -15.15100 -15.02938 -14.86933 -14.58053 -14.29643 -13.95166 -13.26761 -13.22824 -12.96628 -12.95111 -12.85636 -12.60760 -12.49472 -12.34059 -12.21992 -11.88977 -11.81365 -11.68509 -11.54430 -11.45033 -11.41652 -10.75645 -10.60611 -9.95794 -9.58784 -9.28004 -8.24660 -6.35031 0.10769 0.15226 0.87512 1.26072 1.41172 1.41696 1.52954 1.58873 2.26110 2.44756 2.52718 2.99424 3.10187 3.42700 3.71926 3.85931 3.89526 3.99234 4.13394 4.30108 4.30742 4.49676 4.51583 4.52873 4.78968 4.84493 4.86598 4.87619 5.04884 5.05220 5.31159 5.33026 5.47925 5.52285 5.59076 5.73327 5.79694 6.16424 6.70514 6.78735 7.34490 7.36286 8.87061 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.002798 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.196455 B =10006.362875 C =10704.678309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.146 3.854 11 N -0.715 5.715 12 C 0.525 3.475 13 O -0.562 6.562 14 C -0.181 4.181 15 H 0.153 0.847 16 C -0.119 4.119 17 C -0.099 4.099 18 H 0.139 0.861 19 C -0.030 4.030 20 C -0.046 4.046 21 C -0.115 4.115 22 C -0.105 4.105 23 C -0.055 4.055 24 Cl -0.061 7.061 25 C -0.040 4.040 26 Cl -0.056 7.056 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.005 0.995 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.409 0.591 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -22.952 -2.128 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.365 5.365 12 C 0.313 3.687 13 O -0.442 6.442 14 C -0.202 4.202 15 H 0.171 0.829 16 C -0.156 4.156 17 C -0.117 4.117 18 H 0.157 0.843 19 C -0.031 4.031 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.082 4.082 24 Cl -0.032 7.032 25 C -0.068 4.068 26 Cl -0.027 7.027 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.244 0.756 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.606 -22.948 -1.879 23.954 hybrid contribution -0.148 1.196 0.590 1.341 sum 6.458 -21.753 -1.289 22.728 Atomic orbital electron populations 1.70052 1.07512 1.27982 1.51043 1.25854 0.95774 1.03041 0.94447 0.85479 0.78626 0.78585 0.78580 1.19624 1.20586 1.19161 1.21471 0.93526 0.92027 1.51463 0.92425 1.19119 0.94246 0.91856 0.96205 1.21126 0.94827 0.82319 0.99514 1.46151 1.11027 1.05478 1.73891 1.20319 0.87633 0.85315 0.75473 1.90713 1.14866 1.87461 1.51167 1.22389 1.02358 0.88188 1.07223 0.82922 1.23352 1.03178 0.99216 0.89880 1.21169 0.88574 0.97645 1.04344 0.84290 1.18857 0.94433 0.96988 0.92860 1.21018 0.94707 0.93485 0.97258 1.21349 0.93903 0.99063 0.99060 1.21186 1.01550 0.97231 0.92402 1.20776 0.90149 1.03795 0.93496 1.98355 1.72465 1.83938 1.48459 1.20586 0.90992 1.02642 0.92548 1.98343 1.79932 1.76881 1.47591 0.92548 0.97259 0.97657 0.94204 0.93377 0.75590 0.83634 0.87948 0.84926 0.83055 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 13.29 21.45 0.28 -53.59 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.15 6.05 5.61 86.38 0.48 6.53 16 11 N -0.72 -23.09 5.56 -463.07 -2.57 -25.66 16 12 C 0.52 15.59 7.48 87.66 0.66 16.25 16 13 O -0.56 -19.90 11.73 -3.03 -0.04 -19.94 16 14 C -0.18 -3.59 6.19 -11.54 -0.07 -3.66 16 15 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.12 -1.72 9.58 30.62 0.29 -1.43 16 17 C -0.10 -1.88 5.55 -11.51 -0.06 -1.95 16 18 H 0.14 2.26 7.16 -2.39 -0.02 2.24 16 19 C -0.03 -0.73 4.35 -19.85 -0.09 -0.82 16 20 C -0.05 -1.11 6.19 22.27 0.14 -0.98 16 21 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 22 C -0.11 -2.37 9.83 22.29 0.22 -2.15 16 23 C -0.05 -1.38 6.32 22.34 0.14 -1.23 16 24 Cl -0.06 -1.42 27.96 -2.72 -0.08 -1.50 16 25 C -0.04 -1.03 6.32 22.34 0.14 -0.89 16 26 Cl -0.06 -1.32 26.43 -2.72 -0.07 -1.39 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 11.34 8.47 -92.71 -0.79 10.56 16 33 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.57 6.17 -2.39 -0.01 1.56 16 35 H 0.13 2.96 5.80 -2.91 -0.02 2.95 16 36 H 0.15 2.68 8.06 -2.92 -0.02 2.66 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -66.27 341.57 2.81 -63.46 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.33 Total: 13.83 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 2.92 Total: -20.49 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.29 Total: -79.25 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.04 Total: -19.94 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.15 Total: -2.89 kcal Total: -66.27 2.81 -63.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.303 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds