Wall clock time and date at job start Tue Mar 31 2020 15:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48500 * 109.46706 * 269.99369 * 3 2 1 5 5 H 1.48501 * 109.47503 * 29.99120 * 3 2 1 6 6 H 1.48499 * 109.47120 * 149.99345 * 3 2 1 7 7 C 1.37876 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46972 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47264 * 179.97438 * 10 9 7 12 12 C 1.34766 * 120.00125 * 180.02562 * 11 10 9 13 13 O 1.21287 * 120.00232 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00257 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.55148 * 34.32406 * 14 12 11 16 16 C 1.53005 * 117.51570 * 248.62682 * 14 12 11 17 17 C 1.52994 * 59.99976 * 252.51817 * 16 14 12 18 18 H 1.09004 * 117.52193 * 107.48544 * 17 16 14 19 19 C 1.50699 * 117.49955 * 252.51251 * 17 16 14 20 20 C 1.38250 * 119.99857 * 8.90128 * 19 17 16 21 21 C 1.38222 * 120.03898 * 180.23565 * 20 19 17 22 22 C 1.38253 * 120.03603 * 359.48356 * 21 20 19 23 23 C 1.38304 * 120.00020 * 0.26309 * 22 21 20 24 24 Cl 1.73598 * 120.02032 * 180.02562 * 23 22 21 25 25 C 1.38302 * 120.00315 * 188.62479 * 19 17 16 26 26 Cl 1.73600 * 120.01801 * 359.97438 * 25 19 17 27 27 H 0.96996 * 119.99838 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47298 * 59.99516 * 9 7 2 29 29 H 1.08996 * 109.47255 * 299.99192 * 9 7 2 30 30 H 1.08999 * 109.46956 * 59.99978 * 10 9 7 31 31 H 1.08996 * 109.47019 * 300.00008 * 10 9 7 32 32 H 0.97007 * 119.99561 * 0.02562 * 11 10 9 33 33 H 1.09005 * 117.49482 * 145.02605 * 16 14 12 34 34 H 1.09003 * 117.49493 * 0.02562 * 16 14 12 35 35 H 1.08000 * 119.98271 * 359.97226 * 20 19 17 36 36 H 1.08002 * 119.98508 * 179.76955 * 21 20 19 37 37 H 1.07996 * 120.00017 * 180.23497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0979 0.0018 13 8 3.3995 -6.0980 0.0023 14 6 1.4332 -7.4031 0.0018 15 1 0.4950 -7.4044 -0.5531 16 6 1.5075 -8.2622 1.2658 17 6 2.2553 -8.6935 0.0026 18 1 3.3412 -8.5985 0.0030 19 6 1.7060 -9.8689 -0.7640 20 6 0.4733 -10.3976 -0.4290 21 6 -0.0291 -11.4787 -1.1285 22 6 0.6958 -12.0259 -2.1709 23 6 1.9268 -11.4949 -2.5107 24 17 2.8371 -12.1812 -3.8199 25 6 2.4325 -10.4151 -1.8065 26 17 3.9769 -9.7466 -2.2326 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8894 32 1 0.5428 -4.9308 0.0011 33 1 0.6182 -8.8286 1.5423 34 1 2.1012 -7.8831 2.0977 35 1 -0.0955 -9.9683 0.3824 36 1 -0.9905 -11.8934 -0.8636 37 1 0.3010 -12.8682 -2.7194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273032914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:36 Heat of formation + Delta-G solvation = -15.529132 kcal Electronic energy + Delta-G solvation = -21618.173132 eV Core-core repulsion = 18026.275483 eV Total energy + Delta-G solvation = -3591.897650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47994 -39.27537 -37.16647 -36.72637 -36.32843 -34.79522 -32.84736 -31.23850 -30.93674 -29.68229 -25.61600 -24.50075 -23.60584 -22.92308 -21.08994 -20.80126 -19.77607 -17.99130 -17.17808 -16.45121 -16.10233 -15.98441 -15.29511 -15.07826 -14.67115 -14.51901 -14.41436 -14.36859 -13.70194 -13.12831 -12.78935 -12.45922 -12.34695 -12.26884 -12.23790 -11.90533 -11.78937 -11.27968 -11.22462 -11.06288 -10.99242 -10.93920 -10.68695 -10.64197 -10.33856 -9.82863 -9.50926 -9.25864 -9.09744 -8.97329 -8.56110 -8.37059 -6.10801 -4.13631 0.56503 0.60655 1.53245 1.93596 2.68570 3.01045 3.28733 3.34759 3.38489 3.53713 3.79107 4.11635 4.35857 4.40702 4.50894 4.59130 4.65914 4.76358 4.85984 4.96982 5.18000 5.26348 5.32175 5.42406 5.54781 5.63217 5.76853 5.81101 6.06821 6.16106 6.32574 6.33025 6.71862 6.89431 7.49956 7.59848 7.87391 7.99357 8.26196 8.62559 8.92389 9.51320 11.00817 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.002204 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.969470 B =12701.815811 C =13168.348500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.716 5.716 12 C 0.533 3.467 13 O -0.546 6.546 14 C -0.167 4.167 15 H 0.125 0.875 16 C -0.140 4.140 17 C -0.097 4.097 18 H 0.136 0.864 19 C -0.027 4.027 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.106 4.106 23 C -0.029 4.029 24 Cl -0.050 7.050 25 C -0.026 4.026 26 Cl -0.036 7.036 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.399 0.601 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -27.881 -2.039 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.365 5.365 12 C 0.318 3.682 13 O -0.425 6.425 14 C -0.188 4.188 15 H 0.143 0.857 16 C -0.177 4.177 17 C -0.115 4.115 18 H 0.154 0.846 19 C -0.028 4.028 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.057 4.057 24 Cl -0.021 7.021 25 C -0.054 4.054 26 Cl -0.007 7.007 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.068 -27.712 -2.201 27.820 hybrid contribution 0.043 0.979 -0.303 1.025 sum -1.025 -26.733 -2.504 26.870 Atomic orbital electron populations 1.69955 1.06087 1.26888 1.50394 1.24997 0.94901 0.99422 0.94973 0.86510 0.79841 0.82978 0.78224 1.20541 1.21152 1.19723 1.21051 0.93254 0.90391 1.51344 0.92252 1.19322 0.94190 0.91100 0.97853 1.21745 0.96067 0.81416 1.00826 1.46243 1.10572 1.06318 1.73400 1.19476 0.87556 0.84432 0.76735 1.90684 1.13767 1.87552 1.50464 1.22417 1.01707 0.90351 1.04369 0.85682 1.23151 1.02605 1.00832 0.91152 1.21096 1.00305 0.90751 0.99378 0.84640 1.18984 0.93896 0.95943 0.94009 1.21198 0.94613 0.96322 1.00278 1.21195 1.00078 0.95773 0.94731 1.21054 0.92425 1.00762 0.98259 1.20778 0.94810 0.96371 0.93711 1.98396 1.73791 1.83611 1.46327 1.20652 0.90713 0.96274 0.97747 1.98422 1.25779 1.84330 1.92140 0.92836 0.95938 0.95910 0.92530 0.92518 0.76791 0.87363 0.87273 0.84107 0.84250 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.29 5.56 -60.29 -0.33 -12.62 16 12 C 0.53 8.84 7.61 -10.99 -0.08 8.76 16 13 O -0.55 -11.11 16.26 5.55 0.09 -11.02 16 14 C -0.17 -1.96 5.82 -91.77 -0.53 -2.50 16 15 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -1.30 9.56 -26.73 -0.26 -1.56 16 17 C -0.10 -1.08 5.06 -91.78 -0.46 -1.55 16 18 H 0.14 1.81 6.69 -51.93 -0.35 1.46 16 19 C -0.03 -0.27 5.61 -104.59 -0.59 -0.86 16 20 C -0.11 -0.77 9.29 -39.58 -0.37 -1.14 16 21 C -0.10 -0.61 10.04 -39.58 -0.40 -1.01 16 22 C -0.11 -0.76 9.83 -39.55 -0.39 -1.15 16 23 C -0.03 -0.28 6.32 -39.47 -0.25 -0.53 16 24 Cl -0.05 -0.47 27.96 -51.86 -1.45 -1.92 16 25 C -0.03 -0.28 6.32 -39.47 -0.25 -0.53 16 26 Cl -0.04 -0.44 26.42 -51.86 -1.37 -1.81 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 33 H 0.11 0.68 6.18 -51.93 -0.32 0.36 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.14 0.72 6.03 -52.49 -0.32 0.41 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -32.06 349.48 -10.49 -42.55 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.25 Total: 1.06 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -4.15 Total: -12.55 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.40 Total: -37.92 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -2.82 Total: -3.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.06 -10.49 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.025 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds