Wall clock time and date at job start Tue Mar 31 2020 15:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00383 * 2 1 4 4 H 1.48500 * 109.47310 * 270.00786 * 3 2 1 5 5 H 1.48506 * 109.46888 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47456 * 149.99995 * 3 2 1 7 7 C 1.37877 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47157 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47352 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00106 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00320 * 359.97438 * 12 11 10 14 14 C 1.50711 * 120.00022 * 179.97438 * 12 11 10 15 15 H 1.08996 * 115.55659 * 325.68876 * 14 12 11 16 16 C 1.52999 * 117.49650 * 111.37419 * 14 12 11 17 17 C 1.52999 * 117.49706 * 179.97438 * 14 12 11 18 18 H 1.09001 * 117.51302 * 145.03494 * 17 14 12 19 19 C 1.50696 * 117.50138 * 0.02562 * 17 14 12 20 20 C 1.38243 * 119.99181 * 300.00796 * 19 17 14 21 21 C 1.38204 * 120.02450 * 180.02562 * 20 19 17 22 22 C 1.38382 * 120.01058 * 359.96059 * 21 20 19 23 23 Cl 1.73607 * 120.00571 * 180.02562 * 22 21 20 24 24 C 1.38310 * 119.99091 * 0.02562 * 22 21 20 25 25 C 1.38335 * 119.99225 * 119.98296 * 19 17 14 26 26 Cl 1.73603 * 120.00986 * 0.02711 * 25 19 17 27 27 H 0.97001 * 119.99492 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47676 * 59.99511 * 9 7 2 29 29 H 1.09005 * 109.46658 * 299.99958 * 9 7 2 30 30 H 1.08994 * 109.47460 * 59.99092 * 10 9 7 31 31 H 1.09001 * 109.46747 * 299.99799 * 10 9 7 32 32 H 0.97008 * 119.99698 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.50002 * 0.02562 * 16 14 12 34 34 H 1.08998 * 117.51690 * 214.96750 * 16 14 12 35 35 H 1.07992 * 119.98793 * 0.02562 * 20 19 17 36 36 H 1.07992 * 119.99364 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.01162 * 180.27344 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5126 -4.9308 -0.0020 12 6 2.1864 -6.0980 -0.0024 13 8 3.3992 -6.0981 -0.0028 14 6 1.4328 -7.4032 -0.0023 15 1 0.4945 -7.4044 0.5523 16 6 1.5075 -8.2621 -1.2663 17 6 2.2549 -8.6936 -0.0034 18 1 1.8577 -9.5441 0.5506 19 6 3.7561 -8.5622 -0.0039 20 6 4.3920 -7.9048 -1.0405 21 6 5.7688 -7.7844 -1.0419 22 6 6.5115 -8.3213 -0.0050 23 17 8.2409 -8.1694 -0.0065 24 6 5.8759 -8.9788 1.0326 25 6 4.4976 -9.0991 1.0333 26 17 3.6989 -9.9246 2.3350 27 1 -0.4849 0.8401 0.0004 28 1 0.6245 -2.5564 -0.8918 29 1 0.6239 -2.5574 0.8881 30 1 2.8712 -3.6048 0.8889 31 1 2.8724 -3.6040 -0.8910 32 1 0.5425 -4.9308 -0.0020 33 1 2.1021 -7.8834 -2.0977 34 1 0.6186 -8.8287 -1.5434 35 1 3.8127 -7.4852 -1.8495 36 1 6.2650 -7.2712 -1.8521 37 1 6.4549 -9.3941 1.8442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273078619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:46 Heat of formation + Delta-G solvation = -21.494040 kcal Electronic energy + Delta-G solvation = -22357.823652 eV Core-core repulsion = 18765.667345 eV Total energy + Delta-G solvation = -3592.156308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57912 -39.97026 -37.93795 -37.56145 -36.97317 -36.35136 -34.78958 -31.95246 -31.76995 -31.15675 -27.24634 -25.18644 -24.80669 -23.74615 -22.70796 -21.77100 -20.86506 -18.96575 -18.51023 -17.79024 -17.00088 -16.64471 -16.48216 -16.38306 -16.06533 -15.60875 -15.12780 -14.98947 -14.90576 -14.57532 -14.31621 -14.06908 -13.35901 -13.23057 -13.21416 -13.02938 -12.91245 -12.56777 -12.46563 -12.27538 -12.23219 -11.90815 -11.81834 -11.64114 -11.47834 -11.45517 -11.41395 -10.75799 -10.60769 -9.98045 -9.67418 -9.25304 -8.24906 -6.35166 0.00516 0.21059 0.85433 1.31260 1.40953 1.41335 1.52671 1.58521 2.26066 2.43684 2.49039 2.99143 3.09971 3.45610 3.69080 3.82854 3.91398 3.95642 4.07024 4.25140 4.35461 4.50732 4.51171 4.52727 4.70122 4.83806 4.86549 4.88536 5.01223 5.08609 5.21318 5.32760 5.42329 5.52218 5.58945 5.64309 5.79570 6.16337 6.70779 6.78510 7.34331 7.36660 8.86805 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002981 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.749501 B = 9390.315544 C =10709.716661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.146 3.854 11 N -0.715 5.715 12 C 0.524 3.476 13 O -0.563 6.563 14 C -0.180 4.180 15 H 0.154 0.846 16 C -0.122 4.122 17 C -0.098 4.098 18 H 0.143 0.857 19 C -0.035 4.035 20 C -0.036 4.036 21 C -0.122 4.122 22 C -0.033 4.033 23 Cl -0.066 7.066 24 C -0.121 4.121 25 C -0.029 4.029 26 Cl -0.057 7.057 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.006 0.994 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.409 0.591 33 H 0.100 0.900 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -23.394 -1.446 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.365 5.365 12 C 0.312 3.688 13 O -0.443 6.443 14 C -0.201 4.201 15 H 0.172 0.828 16 C -0.159 4.159 17 C -0.116 4.116 18 H 0.160 0.840 19 C -0.036 4.036 20 C -0.054 4.054 21 C -0.141 4.141 22 C -0.060 4.060 23 Cl -0.037 7.037 24 C -0.140 4.140 25 C -0.056 4.056 26 Cl -0.028 7.028 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.244 0.756 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.090 -23.313 -1.318 24.131 hybrid contribution 0.039 1.345 0.369 1.395 sum 6.129 -21.968 -0.950 22.827 Atomic orbital electron populations 1.70053 1.07485 1.27974 1.51024 1.25841 0.95773 1.02999 0.94438 0.85487 0.78630 0.78635 0.78567 1.19669 1.20511 1.19211 1.21470 0.93501 0.92061 1.51492 0.92502 1.19119 0.94235 0.91821 0.96234 1.21121 0.94831 0.82383 0.99472 1.46145 1.11034 1.05466 1.73868 1.20354 0.87628 0.85358 0.75443 1.90720 1.14921 1.87460 1.51219 1.22386 1.02391 0.88100 1.07221 0.82802 1.23335 1.03277 0.99336 0.89939 1.21180 0.88586 0.97642 1.04192 0.83967 1.19009 0.94676 0.96764 0.93125 1.20804 0.93276 0.93657 0.97664 1.21169 0.94153 1.00169 0.98623 1.20741 0.84991 1.02743 0.97477 1.98360 1.10063 1.96811 1.98444 1.20856 0.92756 1.01252 0.99142 1.20529 0.92143 1.01273 0.91610 1.98348 1.79839 1.76861 1.47721 0.92541 0.97257 0.97580 0.94180 0.93520 0.75558 0.88137 0.83604 0.84621 0.84100 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.34 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.15 6.06 5.61 86.38 0.48 6.54 16 11 N -0.71 -22.99 5.56 -463.08 -2.57 -25.56 16 12 C 0.52 15.45 7.47 87.66 0.66 16.10 16 13 O -0.56 -19.94 11.70 -3.02 -0.04 -19.98 16 14 C -0.18 -3.47 6.19 -11.54 -0.07 -3.54 16 15 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.12 -1.71 9.57 30.58 0.29 -1.42 16 17 C -0.10 -1.77 5.55 -11.55 -0.06 -1.83 16 18 H 0.14 2.11 7.16 -2.39 -0.02 2.09 16 19 C -0.03 -0.82 4.37 -19.84 -0.09 -0.90 16 20 C -0.04 -0.88 6.17 22.26 0.14 -0.74 16 21 C -0.12 -3.04 9.83 22.30 0.22 -2.82 16 22 C -0.03 -0.80 6.32 22.32 0.14 -0.66 16 23 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 24 C -0.12 -2.87 9.62 22.31 0.21 -2.65 16 25 C -0.03 -0.68 6.31 22.32 0.14 -0.54 16 26 Cl -0.06 -1.16 27.42 -2.72 -0.07 -1.24 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 11.26 8.47 -92.70 -0.79 10.48 16 33 H 0.10 1.54 6.18 -2.39 -0.01 1.53 16 34 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.14 3.13 5.78 -2.91 -0.02 3.11 16 36 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -65.44 343.05 2.79 -62.65 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.33 Total: 14.15 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 2.91 Total: -20.33 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.29 Total: -79.15 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.15 Total: -2.79 kcal Total: -65.44 2.79 -62.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.151 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds