Wall clock time and date at job start Tue Mar 31 2020 15:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47082 * 269.99477 * 3 2 1 5 5 H 1.48500 * 109.47207 * 29.99797 * 3 2 1 6 6 H 1.48500 * 109.46865 * 150.00056 * 3 2 1 7 7 C 1.37877 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99401 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46614 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46649 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99633 * 179.97438 * 11 10 9 13 13 O 1.21273 * 119.99908 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99920 * 180.02562 * 12 11 10 15 15 H 1.09002 * 115.54758 * 34.32829 * 14 12 11 16 16 C 1.52999 * 117.49596 * 248.62283 * 14 12 11 17 17 C 1.52993 * 117.49877 * 180.02562 * 14 12 11 18 18 H 1.08995 * 117.49988 * 214.99962 * 17 14 12 19 19 C 1.50698 * 117.50067 * 0.02562 * 17 14 12 20 20 C 1.38244 * 119.99647 * 59.99407 * 19 17 14 21 21 C 1.38202 * 120.02916 * 180.02562 * 20 19 17 22 22 C 1.38376 * 120.01140 * 0.26411 * 21 20 19 23 23 Cl 1.73599 * 120.00694 * 179.72002 * 22 21 20 24 24 C 1.38308 * 119.98838 * 359.48290 * 22 21 20 25 25 C 1.38346 * 119.99366 * 240.02674 * 19 17 14 26 26 Cl 1.73597 * 120.00416 * 359.94597 * 25 19 17 27 27 H 0.97000 * 119.99435 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47508 * 60.00187 * 9 7 2 29 29 H 1.09001 * 109.47379 * 299.99614 * 9 7 2 30 30 H 1.08992 * 109.47274 * 59.99977 * 10 9 7 31 31 H 1.09001 * 109.46884 * 299.99858 * 10 9 7 32 32 H 0.97002 * 120.00149 * 0.02562 * 11 10 9 33 33 H 1.08999 * 117.50014 * 145.01979 * 16 14 12 34 34 H 1.09002 * 117.49707 * 0.02562 * 16 14 12 35 35 H 1.07996 * 119.98338 * 0.05087 * 20 19 17 36 36 H 1.08002 * 119.99100 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.01854 * 180.27804 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1866 -6.0980 0.0031 13 8 3.3993 -6.0980 0.0027 14 6 1.4330 -7.4031 0.0031 15 1 0.4949 -7.4043 -0.5519 16 6 1.5077 -8.2619 1.2672 17 6 2.2551 -8.6935 0.0045 18 1 1.8580 -9.5437 -0.5500 19 6 3.7563 -8.5621 0.0062 20 6 4.3914 -7.9052 1.0436 21 6 5.7681 -7.7839 1.0456 22 6 6.5112 -8.3153 0.0064 23 17 8.2400 -8.1565 0.0054 24 6 5.8769 -8.9773 -1.0292 25 6 4.4987 -9.0985 -1.0307 26 17 3.7011 -9.9239 -2.3330 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6040 0.8922 31 1 2.8726 -3.6047 -0.8877 32 1 0.5427 -4.9307 0.0016 33 1 0.6185 -8.8282 1.5442 34 1 2.1015 -7.8826 2.0989 35 1 3.8115 -7.4869 1.8530 36 1 6.2636 -7.2701 1.8562 37 1 6.4568 -9.3961 -1.8383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273078620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:50 Heat of formation + Delta-G solvation = -5.345656 kcal Electronic energy + Delta-G solvation = -22358.132426 eV Core-core repulsion = 18766.676364 eV Total energy + Delta-G solvation = -3591.456061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57943 -38.88770 -36.97534 -36.63213 -36.04228 -34.80062 -32.87965 -30.94026 -30.65765 -29.62473 -25.57315 -24.23302 -23.52180 -22.80415 -21.06994 -20.77582 -19.71702 -17.94498 -16.93122 -16.37087 -16.00111 -15.45498 -15.07881 -15.03598 -14.58794 -14.42302 -14.08698 -13.99059 -13.95950 -13.06777 -12.95444 -12.47543 -12.38832 -12.33097 -12.07782 -11.65604 -11.41345 -11.22537 -11.07815 -11.00064 -10.95058 -10.70024 -10.67128 -10.60538 -10.34312 -9.84879 -9.55001 -9.29324 -8.81283 -8.55225 -8.38365 -8.27972 -6.12322 -4.15313 0.93175 1.14572 1.77001 2.23274 2.67692 3.27576 3.33690 3.36888 3.40126 3.55765 3.82877 4.31001 4.39338 4.54817 4.69953 4.72416 4.86467 5.02850 5.16655 5.18674 5.24890 5.40094 5.45738 5.62240 5.64333 5.78590 5.92821 6.12474 6.28982 6.30231 6.32567 6.55139 6.69265 6.87072 7.47868 7.57587 7.85654 7.96762 8.24255 8.59930 8.90700 9.49830 10.99224 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.002983 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.972918 B = 9383.608764 C =10704.186101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.716 5.716 12 C 0.528 3.472 13 O -0.535 6.535 14 C -0.174 4.174 15 H 0.128 0.872 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.126 0.874 19 C -0.026 4.026 20 C -0.025 4.025 21 C -0.111 4.111 22 C -0.022 4.022 23 Cl -0.070 7.070 24 C -0.115 4.115 25 C -0.017 4.017 26 Cl -0.067 7.067 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.398 0.602 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -22.535 1.293 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.364 5.364 12 C 0.313 3.687 13 O -0.414 6.414 14 C -0.195 4.195 15 H 0.146 0.854 16 C -0.182 4.182 17 C -0.111 4.111 18 H 0.144 0.856 19 C -0.027 4.027 20 C -0.044 4.044 21 C -0.130 4.130 22 C -0.048 4.048 23 Cl -0.042 7.042 24 C -0.134 4.134 25 C -0.043 4.043 26 Cl -0.038 7.038 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.494 -22.423 1.174 23.374 hybrid contribution -0.105 1.125 -0.333 1.178 sum 6.389 -21.298 0.841 22.251 Atomic orbital electron populations 1.69955 1.06092 1.26899 1.50339 1.24993 0.94890 0.99416 0.94944 0.86519 0.79852 0.82998 0.78245 1.20533 1.21138 1.19711 1.21043 0.93224 0.90394 1.51419 0.92286 1.19321 0.94186 0.91141 0.97808 1.21717 0.96005 0.81439 1.00727 1.46327 1.10573 1.06400 1.73140 1.19600 0.87699 0.84496 0.76878 1.90721 1.13414 1.86915 1.50328 1.22411 1.01878 0.90664 1.04530 0.85363 1.23145 1.02723 1.01205 0.91171 1.21049 0.89800 0.97737 1.02530 0.85602 1.18738 0.93334 0.97234 0.93418 1.20668 0.93141 0.93357 0.97201 1.20972 0.93793 1.00033 0.98183 1.20626 0.84617 1.02391 0.97214 1.98365 1.10617 1.96740 1.98444 1.20653 0.92456 1.01318 0.98966 1.20367 0.91899 1.00955 0.91128 1.98351 1.80114 1.77147 1.48211 0.92826 0.95989 0.95969 0.92599 0.92579 0.76880 0.87050 0.87729 0.84960 0.84796 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.53 5.61 -4.04 -0.02 2.50 16 11 N -0.72 -11.69 5.56 -60.29 -0.33 -12.02 16 12 C 0.53 8.05 7.47 -10.98 -0.08 7.97 16 13 O -0.54 -9.56 11.71 5.56 0.07 -9.50 16 14 C -0.17 -1.89 6.19 -91.77 -0.57 -2.46 16 15 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.15 -1.25 9.57 -26.76 -0.26 -1.51 16 17 C -0.09 -0.95 5.55 -91.80 -0.51 -1.46 16 18 H 0.13 1.13 7.16 -51.93 -0.37 0.76 16 19 C -0.03 -0.32 4.37 -104.58 -0.46 -0.78 16 20 C -0.03 -0.32 6.17 -39.59 -0.24 -0.56 16 21 C -0.11 -1.38 9.83 -39.54 -0.39 -1.77 16 22 C -0.02 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 16 24 C -0.11 -1.39 9.62 -39.51 -0.38 -1.77 16 25 C -0.02 -0.21 6.31 -39.50 -0.25 -0.45 16 26 Cl -0.07 -0.74 27.42 -51.86 -1.42 -2.16 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 5.65 8.47 -40.82 -0.35 5.30 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.93 6.17 -51.93 -0.32 0.61 16 35 H 0.13 1.56 5.78 -52.49 -0.30 1.26 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -30.48 343.05 -10.53 -41.01 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.27 Total: 2.46 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.96 Total: -13.72 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.40 Total: -37.17 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -2.92 Total: -4.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.48 -10.53 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.665 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds