Wall clock time and date at job start Tue Mar 31 2020 15:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48496 * 109.47131 * 240.00351 * 3 2 1 5 5 H 1.48500 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47110 * 120.00371 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99543 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46837 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46888 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99748 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46978 * 35.00295 * 13 12 11 15 15 C 1.52994 * 109.47220 * 274.99750 * 13 12 11 16 16 O 1.42901 * 109.47675 * 295.00202 * 15 13 12 17 17 C 1.50707 * 109.46721 * 154.99932 * 13 12 11 18 18 C 1.38247 * 119.98667 * 219.99754 * 17 13 12 19 19 C 1.38215 * 120.00664 * 179.97438 * 18 17 13 20 20 C 1.38330 * 119.99152 * 0.02894 * 19 18 17 21 21 Br 1.89100 * 120.00875 * 179.97438 * 20 19 18 22 22 C 1.38320 * 119.97711 * 0.27274 * 20 19 18 23 23 C 1.38219 * 119.99023 * 359.42541 * 22 20 19 24 24 H 0.96996 * 120.00205 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47147 * 60.00203 * 9 7 2 26 26 H 1.08995 * 109.47163 * 300.00457 * 9 7 2 27 27 H 1.08998 * 109.47243 * 60.00374 * 10 9 7 28 28 H 1.08995 * 109.47508 * 300.00112 * 10 9 7 29 29 H 1.08998 * 109.47063 * 60.00031 * 11 10 9 30 30 H 1.09003 * 109.47146 * 299.99936 * 11 10 9 31 31 H 1.00901 * 111.00067 * 56.04286 * 12 11 10 32 32 H 1.09000 * 109.47211 * 55.00371 * 15 13 12 33 33 H 1.09003 * 109.46920 * 175.00059 * 15 13 12 34 34 H 0.96693 * 114.00391 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.99776 * 359.97438 * 18 17 13 36 36 H 1.07998 * 120.00665 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.00516 * 179.70850 * 22 20 19 38 38 H 1.08006 * 119.99587 * 180.32216 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1037 -0.0006 13 6 1.7347 -7.3949 -0.0005 14 1 0.8218 -7.3131 -0.5904 15 6 1.3806 -7.7830 1.4364 16 8 2.5808 -8.0039 2.1798 17 6 2.6276 -8.4505 -0.6005 18 6 2.0953 -9.4077 -1.4441 19 6 2.9138 -10.3756 -1.9950 20 6 4.2656 -10.3869 -1.7016 21 35 5.3858 -11.7114 -2.4544 22 6 4.7965 -9.4327 -0.8525 23 6 3.9783 -8.4614 -0.3070 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8904 29 1 0.8541 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.0694 -6.0366 0.7812 32 1 0.8091 -6.9788 1.8996 33 1 0.7842 -8.6954 1.4298 34 1 2.4319 -8.2545 3.1018 35 1 1.0399 -9.3991 -1.6728 36 1 2.4981 -11.1231 -2.6544 37 1 5.8510 -9.4439 -0.6194 38 1 4.3937 -7.7131 0.3519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273139298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:57 Heat of formation + Delta-G solvation = -38.513455 kcal Electronic energy + Delta-G solvation = -19148.082991 eV Core-core repulsion = 16035.884911 eV Total energy + Delta-G solvation = -3112.198081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81643 -37.67006 -35.72697 -33.83688 -32.57199 -31.28750 -31.13570 -29.52113 -27.67886 -25.80700 -23.37017 -23.07358 -22.08484 -20.63048 -20.02890 -17.75650 -16.78397 -16.28164 -15.60259 -15.52338 -15.39907 -14.91325 -14.47492 -14.10169 -13.86294 -13.56347 -13.34001 -13.12486 -12.40022 -12.30214 -12.06120 -11.83557 -11.50143 -11.24309 -11.13804 -10.86752 -10.80145 -10.58678 -10.53527 -10.44725 -10.22193 -9.70749 -9.35251 -9.08621 -9.07965 -8.65396 -8.33971 -8.22016 -5.99460 -4.01472 0.99819 1.25775 1.48553 3.34234 3.38221 3.41181 3.50210 3.98533 4.37899 4.48534 4.62423 4.68465 4.80243 4.93827 5.20234 5.22812 5.29043 5.36256 5.38088 5.45664 5.61500 5.77175 5.84936 5.89417 6.08800 6.17873 6.28468 6.47508 6.70591 6.72934 6.76640 7.12654 7.26192 7.40256 7.59611 7.68118 7.82926 8.00781 8.44194 9.05495 9.62506 11.11973 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.883775 B =12962.586618 C =13569.286446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.680 5.680 13 C 0.123 3.877 14 H 0.099 0.901 15 C 0.048 3.952 16 O -0.565 6.565 17 C -0.042 4.042 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.094 4.094 21 Br -0.064 7.064 22 C -0.097 4.097 23 C -0.067 4.067 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.348 0.652 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.379 0.621 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -27.210 -0.552 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.311 5.311 13 C 0.012 3.988 14 H 0.117 0.883 15 C -0.031 4.031 16 O -0.370 6.370 17 C -0.043 4.043 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.174 4.174 21 Br 0.021 6.979 22 C -0.117 4.117 23 C -0.086 4.086 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.168 0.832 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.226 0.774 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.805 -27.403 -2.097 28.313 hybrid contribution -0.519 1.058 1.597 1.984 sum 6.286 -26.345 -0.501 27.090 Atomic orbital electron populations 1.69956 1.06058 1.26676 1.50996 1.25030 0.94855 0.99263 0.95367 0.86652 0.79575 0.83098 0.78651 1.20194 1.21321 1.20268 1.21222 0.93043 0.91060 1.50420 0.92708 1.19054 0.93984 0.91373 0.97053 1.21616 0.99201 0.92812 1.00826 1.22201 0.94167 0.90850 0.99792 1.60609 1.19887 1.00087 1.50488 1.20647 0.96182 0.89166 0.92765 0.88329 1.22876 0.87130 0.99704 0.93411 1.86453 1.31309 1.92292 1.26966 1.19821 0.94536 0.94640 0.95284 1.21007 0.99886 0.94912 0.97609 1.20962 0.91604 0.99132 0.99927 1.21715 0.94428 0.97856 1.03354 1.96676 1.65952 1.51934 1.83367 1.21120 1.00358 0.93982 0.96242 1.20953 0.92769 0.96936 0.97926 0.92988 0.96587 0.96878 0.93611 0.92478 0.91390 0.95749 0.83216 0.92838 0.93351 0.77423 0.85453 0.85391 0.85353 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 11 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 12 N -0.68 -9.54 5.70 -107.95 -0.62 -10.16 16 13 C 0.12 1.41 2.65 -68.87 -0.18 1.23 16 14 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 15 C 0.05 0.47 6.70 37.15 0.25 0.72 16 16 O -0.56 -5.37 11.46 -35.23 -0.40 -5.78 16 17 C -0.04 -0.48 4.83 -104.62 -0.51 -0.99 16 18 C -0.11 -1.18 9.67 -39.59 -0.38 -1.56 16 19 C -0.10 -0.98 9.79 -39.56 -0.39 -1.37 16 20 C -0.09 -1.02 6.22 -39.52 -0.25 -1.27 16 21 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16 22 C -0.10 -1.08 9.79 -39.56 -0.39 -1.47 16 23 C -0.07 -0.79 8.32 -39.59 -0.33 -1.12 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 30 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 31 H 0.35 4.86 7.29 -39.29 -0.29 4.58 16 32 H 0.05 0.54 7.35 -51.93 -0.38 0.16 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 2.11 9.12 45.56 0.42 2.52 16 35 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 38 H 0.13 1.60 7.00 -52.48 -0.37 1.24 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -31.14 338.17 -10.13 -41.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.74 Total: 2.39 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.89 Total: -20.36 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.12 Total: -36.46 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.40 Total: -5.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.14 -10.13 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.757 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds