Wall clock time and date at job start Tue Mar 31 2020 15:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48496 * 109.47131 * 240.00351 * 3 2 1 5 5 H 1.48500 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47110 * 120.00371 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99543 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46837 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46888 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99748 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46978 * 35.00295 * 13 12 11 15 15 C 1.52994 * 109.47220 * 274.99750 * 13 12 11 16 16 O 1.42901 * 109.47675 * 295.00202 * 15 13 12 17 17 C 1.50707 * 109.46721 * 154.99932 * 13 12 11 18 18 C 1.38247 * 119.98667 * 219.99754 * 17 13 12 19 19 C 1.38215 * 120.00664 * 179.97438 * 18 17 13 20 20 C 1.38330 * 119.99152 * 0.02894 * 19 18 17 21 21 Br 1.89100 * 120.00875 * 179.97438 * 20 19 18 22 22 C 1.38320 * 119.97711 * 0.27274 * 20 19 18 23 23 C 1.38219 * 119.99023 * 359.42541 * 22 20 19 24 24 H 0.96996 * 120.00205 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47147 * 60.00203 * 9 7 2 26 26 H 1.08995 * 109.47163 * 300.00457 * 9 7 2 27 27 H 1.08998 * 109.47243 * 60.00374 * 10 9 7 28 28 H 1.08995 * 109.47508 * 300.00112 * 10 9 7 29 29 H 1.08998 * 109.47063 * 60.00031 * 11 10 9 30 30 H 1.09003 * 109.47146 * 299.99936 * 11 10 9 31 31 H 1.00901 * 111.00067 * 56.04286 * 12 11 10 32 32 H 1.09000 * 109.47211 * 55.00371 * 15 13 12 33 33 H 1.09003 * 109.46920 * 175.00059 * 15 13 12 34 34 H 0.96693 * 114.00391 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.99776 * 359.97438 * 18 17 13 36 36 H 1.07998 * 120.00665 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.00516 * 179.70850 * 22 20 19 38 38 H 1.08006 * 119.99587 * 180.32216 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1037 -0.0006 13 6 1.7347 -7.3949 -0.0005 14 1 0.8218 -7.3131 -0.5904 15 6 1.3806 -7.7830 1.4364 16 8 2.5808 -8.0039 2.1798 17 6 2.6276 -8.4505 -0.6005 18 6 2.0953 -9.4077 -1.4441 19 6 2.9138 -10.3756 -1.9950 20 6 4.2656 -10.3869 -1.7016 21 35 5.3858 -11.7114 -2.4544 22 6 4.7965 -9.4327 -0.8525 23 6 3.9783 -8.4614 -0.3070 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8904 29 1 0.8541 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.0694 -6.0366 0.7812 32 1 0.8091 -6.9788 1.8996 33 1 0.7842 -8.6954 1.4298 34 1 2.4319 -8.2545 3.1018 35 1 1.0399 -9.3991 -1.6728 36 1 2.4981 -11.1231 -2.6544 37 1 5.8510 -9.4439 -0.6194 38 1 4.3937 -7.7131 0.3519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273139298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:56 Heat of formation + Delta-G solvation = -58.598723 kcal Electronic energy + Delta-G solvation = -19148.953954 eV Core-core repulsion = 16035.884911 eV Total energy + Delta-G solvation = -3113.069043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65704 -38.56034 -36.88161 -35.47363 -33.97043 -32.61000 -31.94757 -30.70604 -28.70641 -27.42683 -24.68109 -23.99841 -23.30822 -21.99409 -21.24947 -18.65237 -18.32432 -17.61114 -16.71802 -16.61091 -16.35246 -16.23259 -15.76507 -15.28429 -15.10415 -14.39738 -14.33312 -14.25002 -14.01221 -13.54664 -13.41656 -13.08523 -12.94469 -12.70217 -12.46731 -12.33680 -12.04212 -11.98096 -11.67280 -11.52328 -11.37862 -11.22572 -11.12866 -10.89453 -10.54166 -9.89641 -9.51837 -9.30096 -8.19826 -6.30461 0.16897 0.44775 0.68508 1.40211 1.43149 1.51066 2.41249 2.66529 3.13209 3.13574 3.52368 3.76248 3.87556 4.03895 4.11077 4.25090 4.36337 4.44209 4.48214 4.52421 4.61937 4.65867 4.76307 4.81702 5.00343 5.08454 5.13620 5.24685 5.28539 5.34075 5.52400 5.65242 5.76776 5.86924 5.91896 6.10053 6.28464 6.46021 6.86208 6.87614 7.38583 8.91767 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.883775 B =12962.586618 C =13569.286446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.682 5.682 13 C 0.121 3.879 14 H 0.105 0.895 15 C 0.054 3.946 16 O -0.578 6.578 17 C -0.052 4.052 18 C -0.116 4.116 19 C -0.099 4.099 20 C -0.105 4.105 21 Br -0.057 7.057 22 C -0.105 4.105 23 C -0.079 4.079 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.349 0.651 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -27.974 -0.581 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.314 5.314 13 C 0.011 3.989 14 H 0.123 0.877 15 C -0.025 4.025 16 O -0.386 6.386 17 C -0.053 4.053 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.184 4.184 21 Br 0.029 6.971 22 C -0.125 4.125 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.168 0.832 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.327 -28.194 -2.111 29.207 hybrid contribution -0.671 1.225 1.602 2.125 sum 6.656 -26.969 -0.510 27.783 Atomic orbital electron populations 1.70082 1.07712 1.27821 1.51712 1.25970 0.95794 1.03297 0.94755 0.85525 0.78314 0.78197 0.79171 1.19298 1.20733 1.19171 1.21681 0.93500 0.92540 1.50510 0.92426 1.18953 0.94371 0.92938 0.94825 1.21360 0.98031 0.93134 1.00509 1.21878 0.93917 0.89858 0.99900 1.60502 1.19585 1.00546 1.50722 1.20727 0.96176 0.87732 0.94302 0.87704 1.22757 0.87222 1.00362 0.92171 1.86418 1.31426 1.92402 1.28383 1.19876 0.94423 0.95080 0.95875 1.21262 1.01061 0.94341 0.96838 1.21227 0.91367 0.99384 0.99842 1.21889 0.95031 0.98059 1.03410 1.96678 1.65820 1.51463 1.83186 1.21244 1.00809 0.94023 0.96399 1.20965 0.93211 0.97224 0.98377 0.92756 0.98935 0.98917 0.93366 0.93199 0.91628 0.95360 0.83169 0.93314 0.91484 0.75483 0.83296 0.83625 0.84606 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.80 5.41 30.60 0.17 -3.64 16 11 C 0.07 2.39 5.48 86.31 0.47 2.87 16 12 N -0.68 -18.62 5.70 -495.43 -2.83 -21.44 16 13 C 0.12 2.60 2.65 44.17 0.12 2.72 16 14 H 0.11 2.11 7.66 -2.39 -0.02 2.10 16 15 C 0.05 0.96 6.70 71.98 0.48 1.44 16 16 O -0.58 -10.18 11.46 -148.98 -1.71 -11.89 16 17 C -0.05 -1.11 4.83 -19.86 -0.10 -1.21 16 18 C -0.12 -2.15 9.67 22.27 0.22 -1.93 16 19 C -0.10 -1.82 9.79 22.29 0.22 -1.60 16 20 C -0.10 -2.13 6.22 22.31 0.14 -1.99 16 21 Br -0.06 -1.03 33.70 -20.37 -0.69 -1.72 16 22 C -0.11 -2.23 9.79 22.28 0.22 -2.02 16 23 C -0.08 -1.79 8.32 22.26 0.19 -1.60 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 30 H 0.03 0.90 7.36 -2.39 -0.02 0.88 16 31 H 0.35 9.50 7.29 -89.69 -0.65 8.85 16 32 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.40 3.77 9.12 -74.06 -0.68 3.10 16 35 H 0.15 2.03 8.04 -2.91 -0.02 2.01 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.13 3.00 7.00 -2.91 -0.02 2.98 16 Total: -1.00 -66.22 338.17 -0.21 -66.43 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.26 Total: 14.76 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 2.96 Total: -36.08 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.54 Total: -78.08 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.71 Total: -11.89 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -0.69 Total: -1.72 kcal Total: -66.22 -0.21 -66.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.833 kcal (2) G-P(sol) polarization free energy of solvation -66.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds