Wall clock time and date at job start Tue Mar 31 2020 15:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00322 * 2 1 4 4 H 1.48489 * 109.47105 * 239.99837 * 3 2 1 5 5 H 1.48497 * 109.46698 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47023 * 119.99598 * 3 2 1 7 7 C 1.37882 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47293 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00296 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46772 * 325.00164 * 13 12 11 15 15 C 1.53006 * 109.47346 * 84.99422 * 13 12 11 16 16 O 1.42906 * 109.46752 * 65.00065 * 15 13 12 17 17 C 1.50699 * 109.47459 * 204.99681 * 13 12 11 18 18 C 1.38244 * 119.98557 * 319.72325 * 17 13 12 19 19 C 1.38221 * 120.00715 * 179.76600 * 18 17 13 20 20 C 1.38327 * 119.98741 * 0.50659 * 19 18 17 21 21 Br 1.89097 * 120.01083 * 179.76788 * 20 19 18 22 22 C 1.38327 * 119.98168 * 359.75025 * 20 19 18 23 23 C 1.38215 * 119.98979 * 359.97438 * 22 20 19 24 24 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47332 * 59.99212 * 9 7 2 26 26 H 1.08999 * 109.46908 * 299.99655 * 9 7 2 27 27 H 1.09003 * 109.47557 * 59.99409 * 10 9 7 28 28 H 1.08999 * 109.46777 * 299.99572 * 10 9 7 29 29 H 1.09003 * 109.47284 * 59.99262 * 11 10 9 30 30 H 1.08999 * 109.46876 * 299.99532 * 11 10 9 31 31 H 1.00910 * 110.99695 * 303.94841 * 12 11 10 32 32 H 1.08993 * 109.46955 * 185.00483 * 15 13 12 33 33 H 1.09000 * 109.47050 * 305.00312 * 15 13 12 34 34 H 0.96698 * 113.99404 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.99677 * 0.02562 * 18 17 13 36 36 H 1.07994 * 120.00960 * 180.23098 * 19 18 17 37 37 H 1.07997 * 120.00570 * 179.97438 * 22 20 19 38 38 H 1.08002 * 119.99782 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4347 -6.1037 0.0031 13 6 1.7344 -7.3950 0.0043 14 1 0.8214 -7.3126 0.5940 15 6 1.3802 -7.7846 -1.4323 16 8 2.5806 -8.0062 -2.1754 17 6 2.6271 -8.4500 0.6053 18 6 3.9769 -8.4646 0.3073 19 6 4.7969 -9.4292 0.8620 20 6 4.2648 -10.3862 1.7072 21 35 5.3848 -11.7100 2.4614 22 6 2.9131 -10.3744 2.0009 23 6 2.0949 -9.4061 1.4502 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8895 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 0.8538 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.0696 -6.0371 -0.7784 32 1 0.7838 -8.6968 -1.4248 33 1 0.8088 -6.9807 -1.8963 34 1 2.4316 -8.2569 -3.0974 35 1 4.3915 -7.7198 -0.3558 36 1 5.8521 -9.4383 0.6322 37 1 2.4971 -11.1216 2.6604 38 1 1.0396 -9.3965 1.6797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273139299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:00 Heat of formation + Delta-G solvation = -38.542760 kcal Electronic energy + Delta-G solvation = -19148.108850 eV Core-core repulsion = 16035.909498 eV Total energy + Delta-G solvation = -3112.199351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81609 -37.66905 -35.72660 -33.83672 -32.57281 -31.28785 -31.13593 -29.52172 -27.67788 -25.80655 -23.37024 -23.07350 -22.08481 -20.63079 -20.02879 -17.75652 -16.78312 -16.28126 -15.60144 -15.52226 -15.39921 -14.91687 -14.47517 -14.10129 -13.86209 -13.56421 -13.33877 -13.12428 -12.40084 -12.30178 -12.06138 -11.83683 -11.50007 -11.24401 -11.13859 -10.86789 -10.80050 -10.58671 -10.53544 -10.44724 -10.22214 -9.70711 -9.35229 -9.08605 -9.07964 -8.65450 -8.34035 -8.21857 -5.99485 -4.01451 0.99808 1.25758 1.48579 3.34249 3.38234 3.41189 3.50165 3.98606 4.37871 4.48533 4.62421 4.68511 4.80271 4.93740 5.20254 5.22831 5.29084 5.36284 5.38072 5.45637 5.61509 5.77167 5.84998 5.89440 6.08808 6.17862 6.28508 6.47522 6.70625 6.72925 6.76642 7.12651 7.26241 7.40193 7.59665 7.68136 7.82955 8.00766 8.44226 9.05490 9.62515 11.11951 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.255122 B =12961.955346 C =13569.086539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.680 5.680 13 C 0.123 3.877 14 H 0.099 0.901 15 C 0.048 3.952 16 O -0.565 6.565 17 C -0.042 4.042 18 C -0.067 4.067 19 C -0.097 4.097 20 C -0.094 4.094 21 Br -0.064 7.064 22 C -0.096 4.096 23 C -0.115 4.115 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.348 0.652 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.379 0.621 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -27.209 0.565 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.311 5.311 13 C 0.013 3.987 14 H 0.117 0.883 15 C -0.031 4.031 16 O -0.370 6.370 17 C -0.043 4.043 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.174 4.174 21 Br 0.021 6.979 22 C -0.116 4.116 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.226 0.774 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.803 -27.402 2.111 28.313 hybrid contribution -0.518 1.058 -1.595 1.983 sum 6.285 -26.344 0.515 27.089 Atomic orbital electron populations 1.69955 1.06063 1.26670 1.50985 1.25029 0.94855 0.99263 0.95366 0.86651 0.79576 0.83097 0.78650 1.20263 1.21322 1.20200 1.21223 0.93042 0.91059 1.50431 0.92710 1.19053 0.93985 0.91373 0.97052 1.21616 0.99200 0.92813 1.00826 1.22198 0.94169 0.90849 0.99788 1.60597 1.19872 1.00088 1.50525 1.20647 0.96177 0.89161 0.92763 0.88331 1.22879 0.87129 0.99701 0.93420 1.86456 1.31302 1.92280 1.26979 1.19820 0.94551 0.94630 0.95275 1.20957 0.92763 0.96999 0.97870 1.21121 1.00335 0.94003 0.96239 1.21716 0.94417 0.97821 1.03407 1.96676 1.65959 1.51974 1.83319 1.20961 0.91619 0.99135 0.99905 1.21006 0.99884 0.94899 0.97629 0.92989 0.96872 0.96596 0.92477 0.93614 0.95751 0.91394 0.83210 0.93349 0.92837 0.77426 0.84761 0.85352 0.85390 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 11 C 0.06 0.96 5.48 -3.83 -0.02 0.94 16 12 N -0.68 -9.55 5.71 -107.95 -0.62 -10.16 16 13 C 0.12 1.42 2.65 -68.86 -0.18 1.23 16 14 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 15 C 0.05 0.47 6.71 37.16 0.25 0.72 16 16 O -0.56 -5.37 11.43 -35.23 -0.40 -5.77 16 17 C -0.04 -0.48 4.83 -104.62 -0.51 -0.99 16 18 C -0.07 -0.79 8.31 -39.59 -0.33 -1.12 16 19 C -0.10 -1.08 9.79 -39.55 -0.39 -1.46 16 20 C -0.09 -1.03 6.22 -39.52 -0.25 -1.27 16 21 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16 22 C -0.10 -0.98 9.79 -39.56 -0.39 -1.37 16 23 C -0.11 -1.18 9.67 -39.59 -0.38 -1.56 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 30 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 31 H 0.35 4.86 7.29 -39.29 -0.29 4.58 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.54 7.35 -51.93 -0.38 0.16 16 34 H 0.38 2.11 9.12 45.56 0.42 2.52 16 35 H 0.13 1.60 6.99 -52.49 -0.37 1.24 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -31.14 338.14 -10.13 -41.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.74 Total: 2.39 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.89 Total: -20.36 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.12 Total: -36.46 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.40 Total: -5.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.14 -10.13 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.728 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds