Wall clock time and date at job start Tue Mar 31 2020 15:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00322 * 2 1 4 4 H 1.48489 * 109.47105 * 239.99837 * 3 2 1 5 5 H 1.48497 * 109.46698 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47023 * 119.99598 * 3 2 1 7 7 C 1.37882 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47293 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00296 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46772 * 325.00164 * 13 12 11 15 15 C 1.53006 * 109.47346 * 84.99422 * 13 12 11 16 16 O 1.42906 * 109.46752 * 65.00065 * 15 13 12 17 17 C 1.50699 * 109.47459 * 204.99681 * 13 12 11 18 18 C 1.38244 * 119.98557 * 319.72325 * 17 13 12 19 19 C 1.38221 * 120.00715 * 179.76600 * 18 17 13 20 20 C 1.38327 * 119.98741 * 0.50659 * 19 18 17 21 21 Br 1.89097 * 120.01083 * 179.76788 * 20 19 18 22 22 C 1.38327 * 119.98168 * 359.75025 * 20 19 18 23 23 C 1.38215 * 119.98979 * 359.97438 * 22 20 19 24 24 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47332 * 59.99212 * 9 7 2 26 26 H 1.08999 * 109.46908 * 299.99655 * 9 7 2 27 27 H 1.09003 * 109.47557 * 59.99409 * 10 9 7 28 28 H 1.08999 * 109.46777 * 299.99572 * 10 9 7 29 29 H 1.09003 * 109.47284 * 59.99262 * 11 10 9 30 30 H 1.08999 * 109.46876 * 299.99532 * 11 10 9 31 31 H 1.00910 * 110.99695 * 303.94841 * 12 11 10 32 32 H 1.08993 * 109.46955 * 185.00483 * 15 13 12 33 33 H 1.09000 * 109.47050 * 305.00312 * 15 13 12 34 34 H 0.96698 * 113.99404 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.99677 * 0.02562 * 18 17 13 36 36 H 1.07994 * 120.00960 * 180.23098 * 19 18 17 37 37 H 1.07997 * 120.00570 * 179.97438 * 22 20 19 38 38 H 1.08002 * 119.99782 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4347 -6.1037 0.0031 13 6 1.7344 -7.3950 0.0043 14 1 0.8214 -7.3126 0.5940 15 6 1.3802 -7.7846 -1.4323 16 8 2.5806 -8.0062 -2.1754 17 6 2.6271 -8.4500 0.6053 18 6 3.9769 -8.4646 0.3073 19 6 4.7969 -9.4292 0.8620 20 6 4.2648 -10.3862 1.7072 21 35 5.3848 -11.7100 2.4614 22 6 2.9131 -10.3744 2.0009 23 6 2.0949 -9.4061 1.4502 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8895 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 0.8538 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.0696 -6.0371 -0.7784 32 1 0.7838 -8.6968 -1.4248 33 1 0.8088 -6.9807 -1.8963 34 1 2.4316 -8.2569 -3.0974 35 1 4.3915 -7.7198 -0.3558 36 1 5.8521 -9.4383 0.6322 37 1 2.4971 -11.1216 2.6604 38 1 1.0396 -9.3965 1.6797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273139299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:59 Heat of formation + Delta-G solvation = -58.628116 kcal Electronic energy + Delta-G solvation = -19148.979816 eV Core-core repulsion = 16035.909498 eV Total energy + Delta-G solvation = -3113.070318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65664 -38.55935 -36.88139 -35.47356 -33.97115 -32.61029 -31.94778 -30.70661 -28.70562 -27.42610 -24.68059 -23.99858 -23.30862 -21.99375 -21.25016 -18.65202 -18.32411 -17.61043 -16.71810 -16.60958 -16.35086 -16.23314 -15.76925 -15.28406 -15.10330 -14.39775 -14.33253 -14.24941 -14.01185 -13.54681 -13.41615 -13.08653 -12.94378 -12.70214 -12.46774 -12.33688 -12.04248 -11.98182 -11.67258 -11.52241 -11.37838 -11.22570 -11.12894 -10.89450 -10.54234 -9.89638 -9.51938 -9.29895 -8.19853 -6.30446 0.16880 0.44763 0.68531 1.40201 1.43182 1.51076 2.41253 2.66489 3.13238 3.13628 3.52364 3.76249 3.87605 4.03923 4.10985 4.25062 4.36373 4.44232 4.48228 4.52478 4.61935 4.65852 4.76308 4.81713 5.00397 5.08476 5.13628 5.24663 5.28543 5.34070 5.52389 5.65254 5.76789 5.86912 5.91895 6.10087 6.28490 6.46081 6.86197 6.87563 7.38586 8.91743 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.255122 B =12961.955346 C =13569.086539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.682 5.682 13 C 0.121 3.879 14 H 0.105 0.895 15 C 0.054 3.946 16 O -0.578 6.578 17 C -0.052 4.052 18 C -0.078 4.078 19 C -0.105 4.105 20 C -0.105 4.105 21 Br -0.057 7.057 22 C -0.098 4.098 23 C -0.116 4.116 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.349 0.651 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.395 0.605 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -27.972 0.593 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.314 5.314 13 C 0.011 3.989 14 H 0.123 0.877 15 C -0.025 4.025 16 O -0.386 6.386 17 C -0.053 4.053 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.184 4.184 21 Br 0.029 6.971 22 C -0.118 4.118 23 C -0.135 4.135 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.325 -28.191 2.124 29.205 hybrid contribution -0.670 1.224 -1.600 2.123 sum 6.655 -26.967 0.524 27.781 Atomic orbital electron populations 1.70081 1.07717 1.27815 1.51699 1.25968 0.95794 1.03296 0.94754 0.85524 0.78316 0.78197 0.79171 1.19159 1.20732 1.19310 1.21682 0.93498 0.92539 1.50523 0.92428 1.18952 0.94371 0.92938 0.94824 1.21360 0.98031 0.93136 1.00508 1.21874 0.93919 0.89858 0.99895 1.60490 1.19572 1.00550 1.50759 1.20727 0.96171 0.87726 0.94301 0.87706 1.22759 0.87222 1.00356 0.92179 1.86422 1.31417 1.92390 1.28396 1.19876 0.94441 0.95069 0.95870 1.20968 0.93202 0.97288 0.98310 1.21245 1.00787 0.94052 0.96397 1.21890 0.95020 0.98020 1.03462 1.96678 1.65828 1.51504 1.83137 1.21226 0.91381 0.99387 0.99821 1.21261 1.01056 0.94328 0.96859 0.92756 0.98910 0.98946 0.93200 0.93367 0.95361 0.91633 0.83162 0.91485 0.93313 0.75486 0.85474 0.84607 0.83625 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.80 5.41 30.60 0.17 -3.64 16 11 C 0.07 2.39 5.48 86.30 0.47 2.87 16 12 N -0.68 -18.62 5.71 -495.45 -2.83 -21.45 16 13 C 0.12 2.61 2.65 44.17 0.12 2.72 16 14 H 0.11 2.11 7.66 -2.39 -0.02 2.10 16 15 C 0.05 0.96 6.71 71.98 0.48 1.44 16 16 O -0.58 -10.17 11.43 -148.98 -1.70 -11.87 16 17 C -0.05 -1.11 4.83 -19.86 -0.10 -1.21 16 18 C -0.08 -1.78 8.31 22.27 0.19 -1.60 16 19 C -0.11 -2.24 9.79 22.29 0.22 -2.02 16 20 C -0.10 -2.13 6.22 22.31 0.14 -1.99 16 21 Br -0.06 -1.03 33.70 -20.37 -0.69 -1.72 16 22 C -0.10 -1.82 9.79 22.29 0.22 -1.60 16 23 C -0.12 -2.15 9.67 22.26 0.22 -1.93 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 0.90 7.36 -2.39 -0.02 0.88 16 30 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 31 H 0.35 9.50 7.29 -89.69 -0.65 8.85 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 34 H 0.40 3.77 9.12 -74.06 -0.68 3.09 16 35 H 0.13 3.00 6.99 -2.91 -0.02 2.98 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.15 2.03 8.04 -2.91 -0.02 2.01 16 Total: -1.00 -66.22 338.14 -0.21 -66.43 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.26 Total: 14.75 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 2.96 Total: -36.09 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.54 Total: -78.08 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.70 Total: -11.87 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -0.69 Total: -1.72 kcal Total: -66.22 -0.21 -66.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.804 kcal (2) G-P(sol) polarization free energy of solvation -66.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds