Wall clock time and date at job start Tue Mar 31 2020 15:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38162 * 120.02083 * 2 1 4 4 C 1.38325 * 120.04673 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.95582 * 179.74884 * 4 3 2 6 6 C 1.38367 * 120.09114 * 0.02562 * 4 3 2 7 7 C 1.38125 * 120.04337 * 0.02562 * 6 4 3 8 8 C 1.50696 * 120.01946 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47446 * 219.95596 * 8 7 6 10 10 C 1.53004 * 109.46999 * 99.96033 * 8 7 6 11 11 N 1.46898 * 109.47471 * 339.95885 * 8 7 6 12 12 C 1.46897 * 111.00038 * 205.00033 * 11 8 7 13 13 C 1.53004 * 109.47118 * 180.02562 * 12 11 8 14 14 C 1.50711 * 109.47016 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99724 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99814 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00145 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46882 * 90.00076 * 18 16 14 20 20 H 1.48495 * 109.47193 * 210.00429 * 18 16 14 21 21 H 1.48500 * 109.46819 * 330.00400 * 18 16 14 22 22 C 1.38701 * 120.02513 * 180.02562 * 2 1 3 23 23 O 1.35918 * 120.04716 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47334 * 89.99837 * 1 2 3 25 25 H 1.09003 * 109.46922 * 209.99415 * 1 2 3 26 26 H 1.09001 * 109.47078 * 329.99606 * 1 2 3 27 27 H 1.08002 * 119.97868 * 0.02670 * 3 2 1 28 28 H 1.07994 * 119.97871 * 179.97438 * 6 4 3 29 29 H 1.09000 * 109.46929 * 299.99313 * 10 8 7 30 30 H 1.08991 * 109.47419 * 59.99410 * 10 8 7 31 31 H 1.08999 * 109.47349 * 180.02562 * 10 8 7 32 32 H 1.00901 * 110.99820 * 328.95240 * 11 8 7 33 33 H 1.09002 * 109.47165 * 299.99610 * 12 11 8 34 34 H 1.08997 * 109.47553 * 59.99833 * 12 11 8 35 35 H 1.08995 * 109.46792 * 299.99448 * 13 12 11 36 36 H 1.08994 * 109.47008 * 60.00041 * 13 12 11 37 37 H 0.97001 * 120.00311 * 179.97438 * 17 16 14 38 38 H 0.96703 * 113.99287 * 89.99981 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5814 1.1969 -0.0005 5 35 4.5249 2.8356 -0.0077 6 6 4.2757 0.0000 -0.0016 7 6 3.5885 -1.1981 -0.0027 8 6 4.3451 -2.5013 -0.0033 9 1 3.8466 -3.2107 -0.6639 10 6 4.3849 -3.0686 1.4172 11 7 5.7164 -2.2712 -0.4772 12 6 6.2880 -3.4971 -1.0504 13 6 7.7136 -3.2187 -1.5312 14 6 8.2997 -4.4762 -2.1198 15 1 7.7141 -5.3833 -2.1477 16 6 9.5838 -4.4689 -2.6217 17 7 10.0955 -5.5663 -3.1349 18 14 10.5969 -2.9001 -2.5728 19 1 11.3597 -2.8431 -1.3001 20 1 11.5423 -2.8855 -3.7178 21 1 9.6936 -1.7247 -2.6617 22 6 2.2010 -1.2009 -0.0005 23 8 1.5229 -2.3788 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1316 0.0004 28 1 5.3557 0.0026 -0.0024 29 1 4.8835 -2.3593 2.0778 30 1 3.3675 -3.2393 1.7689 31 1 4.9326 -4.0110 1.4169 32 1 5.7467 -1.5129 -1.1421 33 1 6.3073 -4.2786 -0.2908 34 1 5.6774 -3.8236 -1.8922 35 1 7.6946 -2.4371 -2.2907 36 1 8.3238 -2.8925 -0.6891 37 1 10.9988 -5.5611 -3.4884 38 1 1.3264 -2.7194 -0.8840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275293218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:04 Heat of formation + Delta-G solvation = -28.258670 kcal Electronic energy + Delta-G solvation = -19622.306939 eV Core-core repulsion = 16510.553539 eV Total energy + Delta-G solvation = -3111.753400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52526 -37.13495 -36.77105 -33.70519 -32.77536 -31.97080 -30.50906 -28.86968 -28.35256 -27.06271 -24.59112 -23.05522 -21.82649 -20.42567 -20.00270 -18.54007 -16.86201 -16.49195 -16.27396 -15.58580 -14.99318 -14.34177 -14.29275 -13.94193 -13.64884 -13.55301 -13.19140 -12.76030 -12.67205 -12.63026 -12.44070 -12.22295 -11.93461 -11.68982 -11.35371 -11.25033 -10.90994 -10.66730 -10.62904 -10.41711 -10.15617 -9.79795 -9.75322 -9.23554 -8.94825 -8.63927 -8.54092 -8.05244 -6.04910 -4.03494 0.75071 0.98895 1.44181 3.17342 3.33114 3.40016 3.44574 3.92941 4.29534 4.42658 4.46022 4.60243 4.91412 5.02818 5.11480 5.28007 5.29771 5.30782 5.42562 5.51506 5.53358 5.76606 5.89006 5.94985 5.99887 6.09149 6.12845 6.20665 6.27062 6.38065 6.46212 6.76260 7.10669 7.35242 7.36997 7.55466 7.69492 7.85738 8.52063 8.98850 9.57479 11.08386 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.003711 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.993651 B = 7542.411300 C = 9368.048920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.094 4.094 5 Br -0.051 7.051 6 C -0.071 4.071 7 C -0.095 4.095 8 C 0.130 3.870 9 H 0.054 0.946 10 C -0.130 4.130 11 N -0.691 5.691 12 C 0.074 3.926 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.123 3.877 23 O -0.489 6.489 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.336 0.664 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.013 0.987 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.350 16.756 6.931 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.105 4.105 4 C -0.173 4.173 5 Br 0.035 6.965 6 C -0.091 4.091 7 C -0.097 4.097 8 C 0.020 3.980 9 H 0.071 0.929 10 C -0.188 4.188 11 N -0.323 5.323 12 C -0.054 4.054 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C 0.078 3.922 23 O -0.299 6.299 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.516 17.240 8.069 27.261 hybrid contribution -0.007 0.252 -1.410 1.432 sum -19.523 17.492 6.659 27.045 Atomic orbital electron populations 1.20680 0.90051 1.03439 1.02493 1.20128 0.96896 0.91891 1.02019 1.20846 0.91894 0.98056 0.99663 1.21771 0.94560 0.92017 1.08962 1.96726 1.75548 1.26509 1.97725 1.21053 1.01459 0.89424 0.97114 1.20431 0.92833 0.95903 1.00566 1.20281 0.88512 0.91352 0.97877 0.92872 1.21721 1.01252 1.01196 0.94630 1.60814 1.17588 1.09604 1.44326 1.22014 0.96884 0.90005 0.96488 1.19548 0.91698 0.97537 0.95984 1.21057 0.99451 0.96312 1.39181 0.91121 1.25001 0.97619 0.96135 0.94627 1.69912 1.16083 1.27350 1.40923 0.86744 0.80208 0.84422 0.77706 1.20204 1.21501 1.18959 1.18156 0.89012 0.85153 0.99899 1.84798 1.76046 1.35631 1.33431 0.91126 0.90560 0.91336 0.84875 0.83231 0.92222 0.92406 0.91938 0.84547 0.91481 0.95916 0.96886 0.96003 0.92716 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.79 36.00 0.35 -0.43 16 2 C -0.11 -1.05 5.89 -104.48 -0.62 -1.67 16 3 C -0.08 -0.84 9.44 -39.58 -0.37 -1.22 16 4 C -0.09 -1.06 6.22 -39.50 -0.25 -1.31 16 5 Br -0.05 -0.54 33.70 -68.01 -2.29 -2.84 16 6 C -0.07 -0.88 8.61 -39.58 -0.34 -1.22 16 7 C -0.10 -1.19 5.00 -104.48 -0.52 -1.71 16 8 C 0.13 1.80 2.49 -68.87 -0.17 1.62 16 9 H 0.05 0.73 7.51 -51.93 -0.39 0.34 16 10 C -0.13 -1.77 9.39 37.16 0.35 -1.43 16 11 N -0.69 -11.30 5.61 -107.95 -0.61 -11.91 16 12 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 13 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 14 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 22 C 0.12 1.35 6.65 -39.22 -0.26 1.09 16 23 O -0.49 -4.67 11.69 -19.48 -0.23 -4.90 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.56 7.53 -51.93 -0.39 0.16 16 26 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.15 1.97 6.70 -52.49 -0.35 1.62 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 31 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 32 H 0.34 5.28 6.98 -39.29 -0.27 5.01 16 33 H 0.07 1.35 7.44 -51.93 -0.39 0.97 16 34 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 36 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.39 2.22 9.06 45.56 0.41 2.63 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -31.36 333.78 -9.03 -40.39 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.64 Total: 2.65 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.40 Total: -18.51 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.17 Total: -39.09 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.23 Total: -4.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.36 -9.03 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275293218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.132 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds