Wall clock time and date at job start Tue Mar 31 2020 15:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38162 * 120.02083 * 2 1 4 4 C 1.38325 * 120.04673 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.95582 * 179.74884 * 4 3 2 6 6 C 1.38367 * 120.09114 * 0.02562 * 4 3 2 7 7 C 1.38125 * 120.04337 * 0.02562 * 6 4 3 8 8 C 1.50696 * 120.01946 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47446 * 219.95596 * 8 7 6 10 10 C 1.53004 * 109.46999 * 99.96033 * 8 7 6 11 11 N 1.46898 * 109.47471 * 339.95885 * 8 7 6 12 12 C 1.46897 * 111.00038 * 205.00033 * 11 8 7 13 13 C 1.53004 * 109.47118 * 180.02562 * 12 11 8 14 14 C 1.50711 * 109.47016 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99724 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99814 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00145 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46882 * 90.00076 * 18 16 14 20 20 H 1.48495 * 109.47193 * 210.00429 * 18 16 14 21 21 H 1.48500 * 109.46819 * 330.00400 * 18 16 14 22 22 C 1.38701 * 120.02513 * 180.02562 * 2 1 3 23 23 O 1.35918 * 120.04716 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47334 * 89.99837 * 1 2 3 25 25 H 1.09003 * 109.46922 * 209.99415 * 1 2 3 26 26 H 1.09001 * 109.47078 * 329.99606 * 1 2 3 27 27 H 1.08002 * 119.97868 * 0.02670 * 3 2 1 28 28 H 1.07994 * 119.97871 * 179.97438 * 6 4 3 29 29 H 1.09000 * 109.46929 * 299.99313 * 10 8 7 30 30 H 1.08991 * 109.47419 * 59.99410 * 10 8 7 31 31 H 1.08999 * 109.47349 * 180.02562 * 10 8 7 32 32 H 1.00901 * 110.99820 * 328.95240 * 11 8 7 33 33 H 1.09002 * 109.47165 * 299.99610 * 12 11 8 34 34 H 1.08997 * 109.47553 * 59.99833 * 12 11 8 35 35 H 1.08995 * 109.46792 * 299.99448 * 13 12 11 36 36 H 1.08994 * 109.47008 * 60.00041 * 13 12 11 37 37 H 0.97001 * 120.00311 * 179.97438 * 17 16 14 38 38 H 0.96703 * 113.99287 * 89.99981 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5814 1.1969 -0.0005 5 35 4.5249 2.8356 -0.0077 6 6 4.2757 0.0000 -0.0016 7 6 3.5885 -1.1981 -0.0027 8 6 4.3451 -2.5013 -0.0033 9 1 3.8466 -3.2107 -0.6639 10 6 4.3849 -3.0686 1.4172 11 7 5.7164 -2.2712 -0.4772 12 6 6.2880 -3.4971 -1.0504 13 6 7.7136 -3.2187 -1.5312 14 6 8.2997 -4.4762 -2.1198 15 1 7.7141 -5.3833 -2.1477 16 6 9.5838 -4.4689 -2.6217 17 7 10.0955 -5.5663 -3.1349 18 14 10.5969 -2.9001 -2.5728 19 1 11.3597 -2.8431 -1.3001 20 1 11.5423 -2.8855 -3.7178 21 1 9.6936 -1.7247 -2.6617 22 6 2.2010 -1.2009 -0.0005 23 8 1.5229 -2.3788 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1316 0.0004 28 1 5.3557 0.0026 -0.0024 29 1 4.8835 -2.3593 2.0778 30 1 3.3675 -3.2393 1.7689 31 1 4.9326 -4.0110 1.4169 32 1 5.7467 -1.5129 -1.1421 33 1 6.3073 -4.2786 -0.2908 34 1 5.6774 -3.8236 -1.8922 35 1 7.6946 -2.4371 -2.2907 36 1 8.3238 -2.8925 -0.6891 37 1 10.9988 -5.5611 -3.4884 38 1 1.3264 -2.7194 -0.8840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275293218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:04 Heat of formation + Delta-G solvation = -48.963390 kcal Electronic energy + Delta-G solvation = -19623.204763 eV Core-core repulsion = 16510.553539 eV Total energy + Delta-G solvation = -3112.651224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36776 -38.22750 -37.69483 -35.44389 -33.93711 -33.29745 -31.69812 -30.22173 -29.37592 -27.82626 -26.21178 -24.27494 -22.72435 -22.13719 -21.04234 -19.35312 -18.91854 -17.52155 -17.27788 -16.58341 -16.30941 -16.02494 -15.33277 -15.03307 -14.85424 -14.64819 -14.62172 -14.20883 -13.72486 -13.48898 -13.37360 -13.20051 -13.04058 -12.97995 -12.92663 -12.63242 -12.20571 -11.93400 -11.85737 -11.64843 -11.46609 -11.40539 -11.33137 -11.20027 -10.77359 -9.79469 -9.48868 -9.37111 -8.30230 -6.34663 -0.06613 0.15726 0.61099 1.37715 1.38139 1.50838 2.36165 2.36325 3.05618 3.11210 3.22148 3.49167 3.75194 4.12640 4.17599 4.31917 4.33689 4.35432 4.46378 4.59830 4.68715 4.76555 4.82281 4.86062 4.91266 4.97816 5.07865 5.13022 5.24031 5.31099 5.32793 5.38655 5.48440 5.62068 5.65579 6.11203 6.24310 6.44493 6.73572 6.74520 7.30369 8.86390 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.003711 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.993651 B = 7542.411300 C = 9368.048920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.103 4.103 5 Br -0.049 7.049 6 C -0.083 4.083 7 C -0.109 4.109 8 C 0.133 3.867 9 H 0.055 0.945 10 C -0.125 4.125 11 N -0.689 5.689 12 C 0.089 3.911 13 C -0.004 4.004 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.247 1.247 22 C 0.125 3.875 23 O -0.494 6.494 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.341 0.659 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.870 19.041 7.307 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.100 4.100 4 C -0.182 4.182 5 Br 0.037 6.963 6 C -0.103 4.103 7 C -0.111 4.111 8 C 0.024 3.976 9 H 0.073 0.927 10 C -0.183 4.183 11 N -0.321 5.321 12 C -0.040 4.040 13 C -0.042 4.042 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.170 1.170 22 C 0.079 3.921 23 O -0.307 6.307 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -21.065 19.528 8.443 29.939 hybrid contribution 0.360 -0.528 -1.520 1.649 sum -20.705 18.999 6.924 28.942 Atomic orbital electron populations 1.20735 0.87932 1.04077 1.03625 1.20424 0.98361 0.91210 1.00768 1.21132 0.91383 0.99124 0.98407 1.21851 0.95249 0.91731 1.09379 1.96722 1.75756 1.26086 1.97743 1.20963 1.00989 0.90072 0.98258 1.20286 0.93532 0.94907 1.02410 1.20237 0.87156 0.92580 0.97675 0.92682 1.21670 1.01673 1.00389 0.94562 1.60698 1.19514 1.08045 1.43892 1.21665 0.94903 0.91285 0.96156 1.19433 0.93803 0.95240 0.95728 1.21399 0.99518 0.96936 1.39274 0.94866 1.25971 0.99038 0.99854 0.94170 1.70058 1.16796 1.29947 1.42298 0.85633 0.78581 0.80226 0.78037 1.19351 1.20952 1.17021 1.18207 0.88493 0.86069 0.99348 1.84753 1.75685 1.35245 1.35043 0.89637 0.90682 0.89958 0.82783 0.84441 0.92771 0.91269 0.93058 0.83952 0.92316 0.96256 0.96291 0.96023 0.92441 0.73254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.79 71.23 0.70 -0.46 16 2 C -0.11 -1.78 5.89 -19.77 -0.12 -1.90 16 3 C -0.08 -1.40 9.44 22.27 0.21 -1.19 16 4 C -0.10 -2.16 6.22 22.32 0.14 -2.02 16 5 Br -0.05 -0.97 33.70 -20.37 -0.69 -1.66 16 6 C -0.08 -1.98 8.61 22.27 0.19 -1.79 16 7 C -0.11 -2.58 5.00 -19.77 -0.10 -2.68 16 8 C 0.13 3.57 2.49 44.17 0.11 3.68 16 9 H 0.06 1.47 7.51 -2.39 -0.02 1.45 16 10 C -0.13 -3.33 9.39 71.98 0.68 -2.65 16 11 N -0.69 -22.08 5.61 -495.45 -2.78 -24.86 16 12 C 0.09 3.50 5.42 86.31 0.47 3.97 16 13 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 14 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 15 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 16 C 0.01 0.39 5.47 84.65 0.46 0.85 16 17 N -0.95 -60.05 13.96 21.44 0.30 -59.75 16 18 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 22 C 0.12 2.47 6.65 22.50 0.15 2.62 16 23 O -0.49 -8.35 11.69 -92.63 -1.08 -9.43 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.87 7.53 -2.39 -0.02 0.85 16 26 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.14 3.56 6.70 -2.91 -0.02 3.54 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.05 1.45 7.45 -2.39 -0.02 1.43 16 32 H 0.34 10.43 6.98 -89.69 -0.63 9.80 16 33 H 0.06 2.40 7.44 -2.39 -0.02 2.38 16 34 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 35 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 36 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.41 3.70 9.06 -74.06 -0.67 3.03 16 Total: -1.00 -67.54 333.78 0.63 -66.91 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.27 Total: 14.38 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.27 Total: -32.41 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.48 Total: -84.61 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.08 Total: -9.43 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.66 kcal Total: -67.54 0.63 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275293218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.947 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds