Wall clock time and date at job start Tue Mar 31 2020 15:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02328 * 2 1 4 4 C 1.38315 * 120.04370 * 180.02562 * 3 2 1 5 5 Br 1.89107 * 119.95148 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.09711 * 359.73089 * 4 3 2 7 7 C 1.38126 * 120.04272 * 0.54762 * 6 4 3 8 8 C 1.50695 * 120.02658 * 179.72272 * 7 6 4 9 9 H 1.08994 * 109.47229 * 144.72538 * 8 7 6 10 10 C 1.52993 * 109.47261 * 264.72975 * 8 7 6 11 11 N 1.46904 * 109.46760 * 24.73066 * 8 7 6 12 12 C 1.46899 * 111.00029 * 155.00092 * 11 8 7 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 8 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.38699 * 120.02363 * 180.02562 * 2 1 3 23 23 O 1.35915 * 120.04878 * 359.94718 * 22 2 1 24 24 H 1.08999 * 109.46738 * 269.97305 * 1 2 3 25 25 H 1.08997 * 109.47091 * 29.97063 * 1 2 3 26 26 H 1.08998 * 109.47233 * 149.97594 * 1 2 3 27 27 H 1.07995 * 119.97263 * 0.02562 * 3 2 1 28 28 H 1.07990 * 119.98448 * 180.29585 * 6 4 3 29 29 H 1.09001 * 109.46997 * 179.97438 * 10 8 7 30 30 H 1.08999 * 109.47404 * 299.99809 * 10 8 7 31 31 H 1.09004 * 109.47538 * 59.99756 * 10 8 7 32 32 H 1.00908 * 110.99583 * 278.95004 * 11 8 7 33 33 H 1.09002 * 109.47043 * 299.99792 * 12 11 8 34 34 H 1.09001 * 109.47354 * 59.99854 * 12 11 8 35 35 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 36 36 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 37 37 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 38 38 H 0.96697 * 114.00251 * 270.02785 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5815 1.1968 -0.0005 5 35 4.5251 2.8356 0.0002 6 6 4.2758 0.0000 0.0046 7 6 3.5885 -1.1982 -0.0013 8 6 4.3451 -2.5015 -0.0020 9 1 3.7998 -3.2385 0.5874 10 6 4.4918 -3.0051 -1.4392 11 7 5.6767 -2.2949 0.5829 12 6 6.2059 -3.5459 1.1422 13 6 7.5910 -3.2916 1.7402 14 6 8.1336 -4.5748 2.3145 15 1 7.5492 -5.4813 2.2583 16 6 9.3766 -4.5920 2.9109 17 7 10.0885 -3.4882 2.9790 18 14 10.0489 -6.1824 3.6235 19 1 10.1528 -7.2015 2.5483 20 1 11.3938 -5.9359 4.2026 21 1 9.1348 -6.6746 4.6852 22 6 2.2010 -1.2009 -0.0005 23 8 1.5229 -2.3788 0.0000 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6583 2.1315 0.0004 28 1 5.3557 0.0025 0.0090 29 1 5.0395 -3.9476 -1.4397 30 1 3.5038 -3.1584 -1.8732 31 1 5.0372 -2.2681 -2.0287 32 1 6.3132 -1.9046 -0.0959 33 1 5.5346 -3.9084 1.9207 34 1 6.2832 -4.2931 0.3523 35 1 8.2621 -2.9293 0.9614 36 1 7.5142 -2.5443 2.5300 37 1 10.9632 -3.5003 3.3982 38 1 1.3270 -2.7195 0.8835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275293231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:07 Heat of formation + Delta-G solvation = -33.502717 kcal Electronic energy + Delta-G solvation = -19546.805353 eV Core-core repulsion = 16434.824555 eV Total energy + Delta-G solvation = -3111.980799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35101 -37.02207 -36.71516 -33.64140 -32.71340 -31.86350 -30.30253 -28.64262 -27.85540 -26.92293 -24.42884 -23.27017 -21.73263 -20.60891 -20.07895 -18.40960 -16.55819 -16.18749 -16.00350 -15.45640 -14.65763 -14.45005 -14.20732 -13.99706 -13.70973 -13.50002 -13.03102 -12.60983 -12.56107 -12.50728 -12.33579 -12.12686 -11.87910 -11.63868 -11.17244 -11.01700 -10.92347 -10.66075 -10.50735 -10.45187 -10.28413 -10.05417 -9.41191 -9.18067 -8.76817 -8.49721 -8.36085 -7.89574 -6.00415 -4.03309 0.90833 1.16942 1.58422 3.32751 3.33004 3.37406 3.39433 4.07756 4.34710 4.48866 4.59214 4.81841 5.04622 5.14797 5.26380 5.28581 5.35527 5.36511 5.41809 5.56393 5.63372 5.76606 5.85801 5.98866 6.10740 6.13267 6.18848 6.30864 6.40668 6.42775 6.57659 6.94241 7.42196 7.48575 7.69470 7.77911 7.90019 8.06071 8.41674 9.03659 9.60520 11.10904 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003266 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.477950 B = 8570.077996 C =10139.191747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.087 4.087 4 C -0.096 4.096 5 Br -0.054 7.054 6 C -0.056 4.056 7 C -0.077 4.077 8 C 0.126 3.874 9 H 0.087 0.913 10 C -0.173 4.173 11 N -0.686 5.686 12 C 0.067 3.933 13 C 0.026 3.974 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.118 3.882 23 O -0.492 6.492 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.338 0.662 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.064 11.539 -8.108 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.107 4.107 4 C -0.175 4.175 5 Br 0.031 6.969 6 C -0.076 4.076 7 C -0.079 4.079 8 C 0.015 3.985 9 H 0.105 0.895 10 C -0.232 4.232 11 N -0.317 5.317 12 C -0.060 4.060 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.073 3.927 23 O -0.302 6.302 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.149 0.851 28 H 0.162 0.838 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.736 12.493 -8.035 23.910 hybrid contribution 0.500 -1.723 0.165 1.801 sum -18.237 10.770 -7.870 22.595 Atomic orbital electron populations 1.20660 0.90245 1.03232 1.02400 1.20078 0.96733 0.91936 1.02462 1.20793 0.91893 0.97936 1.00096 1.21767 0.94514 0.91952 1.09284 1.96707 1.75658 1.26728 1.97763 1.20926 1.01169 0.89299 0.96176 1.20259 0.92343 0.95863 0.99406 1.20262 0.91590 0.92205 0.94428 0.89497 1.22421 1.02356 1.01561 0.96830 1.60735 1.02492 1.30112 1.38313 1.22185 0.99188 0.87748 0.96921 1.19061 0.88816 0.97199 0.96116 1.21124 1.02010 0.95309 1.37748 0.92833 1.24997 0.96973 0.96227 0.96100 1.69964 1.12139 1.26719 1.44341 0.86652 0.78104 0.83782 0.79413 1.20294 1.21264 1.20226 1.18155 0.89083 0.85024 1.00450 1.84775 1.76145 1.35789 1.33483 0.91221 0.91478 0.90714 0.85074 0.83825 0.91922 0.91951 0.92581 0.84416 0.92356 0.96351 0.96785 0.95640 0.92915 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.79 36.01 0.35 -0.50 16 2 C -0.11 -1.18 5.89 -104.48 -0.62 -1.79 16 3 C -0.09 -0.96 9.44 -39.58 -0.37 -1.33 16 4 C -0.10 -1.19 6.22 -39.51 -0.25 -1.44 16 5 Br -0.05 -0.63 33.70 -68.01 -2.29 -2.92 16 6 C -0.06 -0.76 9.06 -39.58 -0.36 -1.12 16 7 C -0.08 -1.02 5.07 -104.48 -0.53 -1.55 16 8 C 0.13 1.78 2.52 -68.87 -0.17 1.61 16 9 H 0.09 1.23 7.35 -51.93 -0.38 0.85 16 10 C -0.17 -2.26 9.14 37.15 0.34 -1.92 16 11 N -0.69 -11.68 5.24 -107.96 -0.57 -12.25 16 12 C 0.07 1.37 5.42 -3.83 -0.02 1.35 16 13 C 0.03 0.66 5.23 -27.89 -0.15 0.51 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.12 1.40 6.65 -39.22 -0.26 1.14 16 23 O -0.49 -5.01 11.69 -19.47 -0.23 -5.24 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.14 2.05 6.88 -52.49 -0.36 1.69 16 29 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.34 5.61 7.90 -39.29 -0.31 5.30 16 33 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 34 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.39 2.51 9.06 45.56 0.41 2.92 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -30.70 338.35 -9.43 -40.14 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.72 Total: 3.22 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.44 Total: -18.51 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.17 Total: -38.35 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.23 Total: -5.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.70 -9.43 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275293231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds