Wall clock time and date at job start Tue Mar 31 2020 15:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02328 * 2 1 4 4 C 1.38315 * 120.04370 * 180.02562 * 3 2 1 5 5 Br 1.89107 * 119.95148 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.09711 * 359.73089 * 4 3 2 7 7 C 1.38126 * 120.04272 * 0.54762 * 6 4 3 8 8 C 1.50695 * 120.02658 * 179.72272 * 7 6 4 9 9 H 1.08994 * 109.47229 * 144.72538 * 8 7 6 10 10 C 1.52993 * 109.47261 * 264.72975 * 8 7 6 11 11 N 1.46904 * 109.46760 * 24.73066 * 8 7 6 12 12 C 1.46899 * 111.00029 * 155.00092 * 11 8 7 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 8 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.38699 * 120.02363 * 180.02562 * 2 1 3 23 23 O 1.35915 * 120.04878 * 359.94718 * 22 2 1 24 24 H 1.08999 * 109.46738 * 269.97305 * 1 2 3 25 25 H 1.08997 * 109.47091 * 29.97063 * 1 2 3 26 26 H 1.08998 * 109.47233 * 149.97594 * 1 2 3 27 27 H 1.07995 * 119.97263 * 0.02562 * 3 2 1 28 28 H 1.07990 * 119.98448 * 180.29585 * 6 4 3 29 29 H 1.09001 * 109.46997 * 179.97438 * 10 8 7 30 30 H 1.08999 * 109.47404 * 299.99809 * 10 8 7 31 31 H 1.09004 * 109.47538 * 59.99756 * 10 8 7 32 32 H 1.00908 * 110.99583 * 278.95004 * 11 8 7 33 33 H 1.09002 * 109.47043 * 299.99792 * 12 11 8 34 34 H 1.09001 * 109.47354 * 59.99854 * 12 11 8 35 35 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 36 36 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 37 37 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 38 38 H 0.96697 * 114.00251 * 270.02785 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5815 1.1968 -0.0005 5 35 4.5251 2.8356 0.0002 6 6 4.2758 0.0000 0.0046 7 6 3.5885 -1.1982 -0.0013 8 6 4.3451 -2.5015 -0.0020 9 1 3.7998 -3.2385 0.5874 10 6 4.4918 -3.0051 -1.4392 11 7 5.6767 -2.2949 0.5829 12 6 6.2059 -3.5459 1.1422 13 6 7.5910 -3.2916 1.7402 14 6 8.1336 -4.5748 2.3145 15 1 7.5492 -5.4813 2.2583 16 6 9.3766 -4.5920 2.9109 17 7 10.0885 -3.4882 2.9790 18 14 10.0489 -6.1824 3.6235 19 1 10.1528 -7.2015 2.5483 20 1 11.3938 -5.9359 4.2026 21 1 9.1348 -6.6746 4.6852 22 6 2.2010 -1.2009 -0.0005 23 8 1.5229 -2.3788 0.0000 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6583 2.1315 0.0004 28 1 5.3557 0.0025 0.0090 29 1 5.0395 -3.9476 -1.4397 30 1 3.5038 -3.1584 -1.8732 31 1 5.0372 -2.2681 -2.0287 32 1 6.3132 -1.9046 -0.0959 33 1 5.5346 -3.9084 1.9207 34 1 6.2832 -4.2931 0.3523 35 1 8.2621 -2.9293 0.9614 36 1 7.5142 -2.5443 2.5300 37 1 10.9632 -3.5003 3.3982 38 1 1.3270 -2.7195 0.8835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275293231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:07 Heat of formation + Delta-G solvation = -52.884225 kcal Electronic energy + Delta-G solvation = -19547.645799 eV Core-core repulsion = 16434.824555 eV Total energy + Delta-G solvation = -3112.821244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26628 -38.22270 -37.65567 -35.46500 -33.86019 -33.16914 -31.56040 -29.86357 -29.16490 -27.76140 -26.15097 -24.52312 -22.80572 -22.25360 -21.14335 -19.27590 -18.49622 -17.35847 -17.01537 -16.64282 -16.33379 -15.95319 -15.32101 -15.16853 -14.75978 -14.38468 -14.21866 -14.06980 -13.94755 -13.50516 -13.33902 -13.20150 -13.00306 -12.92835 -12.81554 -12.59993 -12.44368 -12.08253 -11.97893 -11.57547 -11.41545 -11.36116 -11.25762 -11.10524 -10.55482 -9.70596 -9.42661 -9.27466 -8.19508 -6.31050 0.00111 0.25055 0.65464 1.40829 1.43876 1.51809 2.40541 2.43089 3.14083 3.20788 3.26721 3.66298 3.81274 4.12758 4.20058 4.24616 4.37907 4.40657 4.51987 4.62379 4.67047 4.80044 4.84471 4.85262 4.91367 5.07248 5.13064 5.20425 5.21689 5.30521 5.42849 5.48094 5.68122 5.70683 5.80244 6.13914 6.27157 6.47787 6.78860 6.86362 7.38295 8.92383 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003266 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.477950 B = 8570.077996 C =10139.191747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.106 4.106 5 Br -0.053 7.053 6 C -0.073 4.073 7 C -0.092 4.092 8 C 0.130 3.870 9 H 0.089 0.911 10 C -0.165 4.165 11 N -0.690 5.690 12 C 0.088 3.912 13 C 0.032 3.968 14 C -0.545 4.545 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.120 3.880 23 O -0.494 6.494 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.128 0.872 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.338 0.662 33 H 0.059 0.941 34 H 0.023 0.977 35 H -0.010 1.010 36 H -0.007 1.007 37 H 0.263 0.737 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.048 10.781 -8.205 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.186 4.186 5 Br 0.032 6.968 6 C -0.093 4.093 7 C -0.094 4.094 8 C 0.020 3.980 9 H 0.107 0.893 10 C -0.224 4.224 11 N -0.320 5.320 12 C -0.041 4.041 13 C -0.005 4.005 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.191 1.191 22 C 0.075 3.925 23 O -0.307 6.307 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -20.749 11.729 -8.134 25.184 hybrid contribution 1.053 -1.428 0.181 1.784 sum -19.696 10.300 -7.954 23.607 Atomic orbital electron populations 1.20718 0.87925 1.04025 1.03533 1.20405 0.98328 0.91222 1.01059 1.21080 0.91272 0.99109 0.98943 1.21863 0.95294 0.91616 1.09813 1.96696 1.75945 1.26344 1.97788 1.20845 1.00584 0.90210 0.97688 1.20189 0.93180 0.95029 1.01009 1.20251 0.89738 0.93147 0.94836 0.89282 1.22334 1.02810 1.01110 0.96140 1.60622 1.03821 1.28371 1.39219 1.21775 0.96168 0.89204 0.96950 1.18908 0.91539 0.95557 0.94531 1.21587 1.02540 0.96319 1.37861 0.92025 1.25971 0.97349 0.99976 0.96421 1.70108 1.12586 1.29212 1.45274 0.85491 0.77376 0.79210 0.78912 1.19109 1.20947 1.19102 1.18190 0.88506 0.86028 0.99811 1.84730 1.75700 1.35227 1.35063 0.89788 0.90034 0.90602 0.82960 0.85435 0.92530 0.90928 0.92556 0.84337 0.92235 0.95858 0.99121 0.98871 0.92791 0.73298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.79 71.24 0.70 -0.62 16 2 C -0.11 -2.06 5.89 -19.77 -0.12 -2.17 16 3 C -0.08 -1.69 9.44 22.27 0.21 -1.48 16 4 C -0.11 -2.58 6.22 22.32 0.14 -2.44 16 5 Br -0.05 -1.23 33.70 -20.37 -0.69 -1.91 16 6 C -0.07 -2.00 9.06 22.27 0.20 -1.80 16 7 C -0.09 -2.39 5.07 -19.77 -0.10 -2.49 16 8 C 0.13 3.62 2.52 44.16 0.11 3.73 16 9 H 0.09 2.42 7.35 -2.39 -0.02 2.40 16 10 C -0.17 -4.18 9.14 71.98 0.66 -3.53 16 11 N -0.69 -23.90 5.24 -495.47 -2.60 -26.50 16 12 C 0.09 3.60 5.42 86.30 0.47 4.07 16 13 C 0.03 1.71 5.23 29.85 0.16 1.86 16 14 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.12 2.62 6.65 22.50 0.15 2.77 16 23 O -0.49 -8.92 11.69 -92.59 -1.08 -10.00 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.80 8.09 -2.39 -0.02 0.79 16 26 H 0.08 0.96 7.53 -2.39 -0.02 0.94 16 27 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.13 3.82 6.88 -2.92 -0.02 3.80 16 29 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.34 11.65 7.90 -89.69 -0.71 10.94 16 33 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 34 H 0.02 0.93 7.44 -2.39 -0.02 0.91 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.41 4.23 9.06 -74.06 -0.67 3.56 16 Total: -1.00 -66.16 338.35 0.91 -65.25 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.30 Total: 16.21 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.27 Total: -32.35 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.31 Total: -83.42 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.08 Total: -10.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 35 Polarization: -1.23 SS G_CDS: -0.69 Total: -1.91 kcal Total: -66.16 0.91 -65.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275293231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.362 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds