Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47059 * 2 1 4 4 C 1.46496 * 120.00103 * 269.72090 * 3 2 1 5 5 C 1.50696 * 109.47422 * 270.27538 * 4 3 2 6 6 H 1.08004 * 119.99939 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99934 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99914 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47286 * 89.99588 * 9 7 5 11 11 H 1.48505 * 109.47229 * 209.99362 * 9 7 5 12 12 H 1.48494 * 109.47204 * 329.99726 * 9 7 5 13 13 C 1.34783 * 119.99693 * 90.00130 * 3 2 1 14 14 O 1.21581 * 119.99794 * 179.72185 * 13 3 2 15 15 N 1.34774 * 120.00130 * 359.72195 * 13 3 2 16 16 C 1.39387 * 120.00246 * 174.86289 * 15 13 3 17 17 C 1.39025 * 119.69312 * 185.06169 * 16 15 13 18 18 C 1.38376 * 119.12229 * 179.80057 * 17 16 15 19 19 C 1.38803 * 118.51112 * 0.47147 * 18 17 16 20 20 C 1.38185 * 119.30015 * 359.74799 * 19 18 17 21 21 Br 1.89104 * 119.58940 * 179.97438 * 20 19 18 22 22 N 1.32019 * 120.82763 * 0.02830 * 20 19 18 23 23 H 1.08994 * 109.47227 * 300.00033 * 1 2 3 24 24 H 1.09003 * 109.46939 * 59.99944 * 1 2 3 25 25 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46976 * 239.99987 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00522 * 2 1 3 28 28 H 1.08996 * 109.47551 * 30.27907 * 4 3 2 29 29 H 1.09007 * 109.46982 * 150.28217 * 4 3 2 30 30 H 0.97000 * 119.99698 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99873 * 354.86692 * 15 13 3 32 32 H 1.07995 * 120.43791 * 0.02562 * 17 16 15 33 33 H 1.08009 * 120.74709 * 180.20183 * 18 17 16 34 34 H 1.08000 * 120.34801 * 179.77733 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2683 2.0697 -1.2687 5 6 3.6916 1.8267 -1.7002 6 1 4.3445 1.2197 -1.0906 7 6 4.1599 2.3785 -2.8738 8 7 5.4019 2.1659 -3.2507 9 14 3.0303 3.4278 -3.9285 10 1 3.1387 4.8480 -3.5083 11 1 3.4261 3.3020 -5.3543 12 1 1.6284 2.9678 -3.7614 13 6 2.2430 2.0165 1.1673 14 8 2.6530 3.1611 1.1673 15 7 2.0130 1.3830 2.3344 16 6 2.3457 1.9996 3.5395 17 6 2.2044 1.3005 4.7328 18 6 2.5420 1.9226 5.9218 19 6 3.0020 3.2314 5.8774 20 6 3.1133 3.8681 4.6561 21 35 3.7384 5.6515 4.5862 22 7 2.7878 3.2472 3.5374 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5877 1.6880 -2.0296 29 1 2.1056 3.1398 -1.1395 30 1 5.7314 2.5544 -4.0761 31 1 1.6161 0.4980 2.3359 32 1 1.8394 0.2840 4.7315 33 1 2.4457 1.4029 6.8637 34 1 3.2704 3.7466 6.7879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276052801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = 36.904440 kcal Electronic energy + Delta-G solvation = -19789.173640 eV Core-core repulsion = 16576.705581 eV Total energy + Delta-G solvation = -3212.468059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74525 -39.15478 -35.60120 -34.72951 -32.74787 -32.64197 -31.32213 -30.38296 -29.27730 -27.48237 -23.97337 -23.28201 -23.03674 -22.00209 -19.50159 -18.18029 -17.19374 -16.85096 -16.38752 -15.82601 -15.23589 -15.08228 -14.28839 -14.16662 -13.87854 -13.64149 -13.40528 -13.16600 -12.61519 -12.31806 -12.15430 -11.97237 -11.46660 -11.31159 -11.02878 -10.81046 -10.48505 -10.43066 -10.31328 -10.12079 -9.87320 -9.59582 -9.48983 -8.87010 -8.55403 -8.25067 -7.69682 -6.05417 -4.03959 0.86633 1.22333 1.43600 2.82729 3.32239 3.37879 3.40761 3.49537 4.01959 4.15582 4.42658 4.49572 4.81327 4.92174 5.00887 5.12547 5.17382 5.27555 5.44085 5.53575 5.65934 5.83637 5.95145 6.07404 6.11420 6.31080 6.47508 6.76424 6.85634 7.15154 7.37366 7.63606 7.87676 8.45877 8.50928 8.97811 9.19675 9.54946 11.08134 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004353 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.292186 B = 6431.506495 C = 7923.086060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.232 3.768 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.688 3.312 14 O -0.516 6.516 15 N -0.673 5.673 16 C 0.402 3.598 17 C -0.207 4.207 18 C -0.039 4.039 19 C -0.187 4.187 20 C 0.163 3.837 21 Br -0.010 7.010 22 N -0.449 5.449 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.410 0.590 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 -2.503 20.046 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.112 3.888 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.388 3.612 14 O -0.386 6.386 15 N -0.322 5.322 16 C 0.167 3.833 17 C -0.232 4.232 18 C -0.066 4.066 19 C -0.212 4.212 20 C -0.056 4.056 21 Br 0.074 6.926 22 N -0.164 5.164 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.248 0.752 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.578 -0.513 18.846 20.712 hybrid contribution -0.797 -0.872 0.024 1.181 sum -9.375 -1.384 18.870 21.116 Atomic orbital electron populations 1.22280 0.96670 1.01654 1.02481 1.21413 0.93405 0.84140 1.02966 1.47303 1.67771 1.13350 1.05546 1.19589 0.97212 0.93295 0.78726 1.21344 0.95463 1.32842 1.07052 0.90834 1.24838 0.94979 0.95762 0.97358 1.69900 1.15051 1.45037 1.23637 0.86860 0.81367 0.81784 0.79718 1.19832 1.21116 1.19082 1.16007 0.80075 0.85188 0.79890 1.91048 1.47690 1.15387 1.84451 1.43173 1.64642 1.20937 1.03496 1.18190 0.91486 0.88332 0.85328 1.21513 1.08157 1.01920 0.91637 1.21289 0.93754 0.93503 0.98057 1.21794 1.05452 0.96317 0.97612 1.22618 0.98849 0.93842 0.90275 1.96773 1.86345 1.10475 1.99021 1.67468 1.12505 1.07991 1.28477 0.93125 0.91880 0.91823 0.89168 0.92219 0.95061 0.94397 0.92593 0.75186 0.84174 0.83725 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.56 5.84 -4.04 -0.02 1.53 16 3 N -0.60 -12.41 2.46 -180.81 -0.44 -12.85 16 4 C 0.23 5.72 4.23 -5.20 -0.02 5.69 16 5 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 6 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.69 14.70 8.24 -86.91 -0.72 13.99 16 14 O -0.52 -13.57 14.18 5.29 0.08 -13.49 16 15 N -0.67 -10.76 5.22 -15.81 -0.08 -10.85 16 16 C 0.40 6.36 7.42 -154.71 -1.15 5.21 16 17 C -0.21 -2.24 9.94 -39.24 -0.39 -2.63 16 18 C -0.04 -0.37 10.17 -39.32 -0.40 -0.76 16 19 C -0.19 -2.11 9.83 -39.39 -0.39 -2.49 16 20 C 0.16 2.53 7.16 -17.49 -0.13 2.40 16 21 Br -0.01 -0.15 33.86 -68.01 -2.30 -2.46 16 22 N -0.45 -8.46 7.85 -10.77 -0.08 -8.54 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 27 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.41 4.80 6.51 -40.82 -0.27 4.53 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -37.02 314.20 -9.14 -46.17 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.87 Total: -0.26 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -3.27 Total: 7.66 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.16 Total: -59.52 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -2.30 Total: -2.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.02 -9.14 -46.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276052801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.072 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds