Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47059 * 2 1 4 4 C 1.46496 * 120.00103 * 269.72090 * 3 2 1 5 5 C 1.50696 * 109.47422 * 270.27538 * 4 3 2 6 6 H 1.08004 * 119.99939 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99934 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99914 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47286 * 89.99588 * 9 7 5 11 11 H 1.48505 * 109.47229 * 209.99362 * 9 7 5 12 12 H 1.48494 * 109.47204 * 329.99726 * 9 7 5 13 13 C 1.34783 * 119.99693 * 90.00130 * 3 2 1 14 14 O 1.21581 * 119.99794 * 179.72185 * 13 3 2 15 15 N 1.34774 * 120.00130 * 359.72195 * 13 3 2 16 16 C 1.39387 * 120.00246 * 174.86289 * 15 13 3 17 17 C 1.39025 * 119.69312 * 185.06169 * 16 15 13 18 18 C 1.38376 * 119.12229 * 179.80057 * 17 16 15 19 19 C 1.38803 * 118.51112 * 0.47147 * 18 17 16 20 20 C 1.38185 * 119.30015 * 359.74799 * 19 18 17 21 21 Br 1.89104 * 119.58940 * 179.97438 * 20 19 18 22 22 N 1.32019 * 120.82763 * 0.02830 * 20 19 18 23 23 H 1.08994 * 109.47227 * 300.00033 * 1 2 3 24 24 H 1.09003 * 109.46939 * 59.99944 * 1 2 3 25 25 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46976 * 239.99987 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00522 * 2 1 3 28 28 H 1.08996 * 109.47551 * 30.27907 * 4 3 2 29 29 H 1.09007 * 109.46982 * 150.28217 * 4 3 2 30 30 H 0.97000 * 119.99698 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99873 * 354.86692 * 15 13 3 32 32 H 1.07995 * 120.43791 * 0.02562 * 17 16 15 33 33 H 1.08009 * 120.74709 * 180.20183 * 18 17 16 34 34 H 1.08000 * 120.34801 * 179.77733 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2683 2.0697 -1.2687 5 6 3.6916 1.8267 -1.7002 6 1 4.3445 1.2197 -1.0906 7 6 4.1599 2.3785 -2.8738 8 7 5.4019 2.1659 -3.2507 9 14 3.0303 3.4278 -3.9285 10 1 3.1387 4.8480 -3.5083 11 1 3.4261 3.3020 -5.3543 12 1 1.6284 2.9678 -3.7614 13 6 2.2430 2.0165 1.1673 14 8 2.6530 3.1611 1.1673 15 7 2.0130 1.3830 2.3344 16 6 2.3457 1.9996 3.5395 17 6 2.2044 1.3005 4.7328 18 6 2.5420 1.9226 5.9218 19 6 3.0020 3.2314 5.8774 20 6 3.1133 3.8681 4.6561 21 35 3.7384 5.6515 4.5862 22 7 2.7878 3.2472 3.5374 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5877 1.6880 -2.0296 29 1 2.1056 3.1398 -1.1395 30 1 5.7314 2.5544 -4.0761 31 1 1.6161 0.4980 2.3359 32 1 1.8394 0.2840 4.7315 33 1 2.4457 1.4029 6.8637 34 1 3.2704 3.7466 6.7879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276052801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = 10.800185 kcal Electronic energy + Delta-G solvation = -19790.305605 eV Core-core repulsion = 16576.705581 eV Total energy + Delta-G solvation = -3213.600024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95988 -40.48730 -37.11024 -36.15042 -34.76657 -33.69406 -32.48553 -31.84267 -30.43703 -29.19268 -25.34667 -24.46954 -24.26302 -23.49799 -20.92105 -19.47380 -19.12840 -18.46684 -17.35283 -16.87829 -16.75027 -16.61954 -15.99121 -15.33382 -15.19686 -15.04445 -14.77408 -14.45473 -14.04198 -13.83734 -13.48290 -13.18227 -13.00856 -12.62063 -12.51116 -12.42605 -12.06403 -11.98795 -11.74669 -11.43850 -11.41975 -11.28146 -10.83065 -10.70238 -10.16547 -9.56979 -9.16697 -8.34072 -6.38634 -0.10370 0.31006 0.41042 1.30855 1.37198 1.43956 1.52643 2.17171 2.30815 2.79124 2.84533 3.01088 3.57476 3.88730 4.02619 4.08422 4.20128 4.35124 4.37231 4.50680 4.72719 4.81546 4.91034 4.97282 4.98327 5.10329 5.24213 5.36050 5.46227 5.57034 5.71084 5.79989 6.25868 6.62080 6.66732 7.13102 7.23671 7.67052 8.83251 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004353 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.292186 B = 6431.506495 C = 7923.086060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.611 5.611 4 C 0.244 3.756 5 C -0.534 4.534 6 H 0.025 0.975 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.235 1.235 13 C 0.684 3.316 14 O -0.580 6.580 15 N -0.657 5.657 16 C 0.360 3.640 17 C -0.181 4.181 18 C -0.026 4.026 19 C -0.169 4.169 20 C 0.125 3.875 21 Br -0.029 7.029 22 N -0.511 5.511 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.015 0.985 30 H 0.268 0.732 31 H 0.430 0.570 32 H 0.186 0.814 33 H 0.201 0.799 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 -4.577 22.236 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.347 5.347 4 C 0.121 3.879 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.158 1.158 13 C 0.384 3.616 14 O -0.454 6.454 15 N -0.310 5.310 16 C 0.126 3.874 17 C -0.205 4.205 18 C -0.053 4.053 19 C -0.193 4.193 20 C -0.092 4.092 21 Br 0.055 6.945 22 N -0.227 5.227 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.272 0.728 32 H 0.203 0.797 33 H 0.218 0.782 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.187 -2.662 21.106 24.035 hybrid contribution 0.073 -0.334 -0.461 0.574 sum -11.114 -2.995 20.645 23.637 Atomic orbital electron populations 1.22188 0.93718 1.03903 1.02098 1.21775 0.95726 0.81050 1.04020 1.47288 1.67898 1.15330 1.04191 1.19195 0.94708 0.92688 0.81268 1.21574 0.97239 1.31935 1.06519 0.95620 1.25834 0.96681 0.97140 0.98995 1.70055 1.17356 1.46677 1.24591 0.85728 0.80624 0.78852 0.77799 1.20641 1.19793 1.15797 1.16269 0.79376 0.84717 0.81196 1.90996 1.50452 1.18245 1.85702 1.42738 1.64661 1.21403 1.02180 1.18678 0.93800 0.88489 0.86420 1.22011 1.05379 1.03257 0.89817 1.21972 0.91246 0.92405 0.99628 1.22252 1.03007 0.97152 0.96853 1.22866 1.01270 0.93818 0.91209 1.96717 1.86677 1.12032 1.99037 1.67149 1.14335 1.10253 1.30957 0.92443 0.93359 0.88131 0.90253 0.89146 0.92738 0.96717 0.92310 0.72820 0.79681 0.78211 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.10 2.72 5.84 86.38 0.50 3.22 16 3 N -0.61 -25.42 2.46 -844.21 -2.07 -27.49 16 4 C 0.24 12.25 4.23 85.63 0.36 12.61 16 5 C -0.53 -32.36 9.94 25.60 0.25 -32.10 16 6 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 9 Si 0.95 45.78 27.47 68.60 1.88 47.67 16 10 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 13 C 0.68 29.96 8.24 179.05 1.47 31.44 16 14 O -0.58 -32.18 14.18 -3.97 -0.06 -32.24 16 15 N -0.66 -20.47 5.22 -322.21 -1.68 -22.15 16 16 C 0.36 10.99 7.42 132.91 0.99 11.97 16 17 C -0.18 -3.13 9.94 22.49 0.22 -2.91 16 18 C -0.03 -0.35 10.17 22.44 0.23 -0.12 16 19 C -0.17 -3.30 9.83 22.39 0.22 -3.08 16 20 C 0.13 3.87 7.16 84.65 0.61 4.48 16 21 Br -0.03 -0.87 33.86 -20.37 -0.69 -1.56 16 22 N -0.51 -19.64 7.85 -187.97 -1.48 -21.12 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 27 H 0.09 1.95 6.46 -2.39 -0.02 1.93 16 28 H 0.05 2.47 7.13 -2.39 -0.02 2.45 16 29 H 0.01 0.81 6.85 -2.38 -0.02 0.79 16 30 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 31 H 0.43 8.96 6.51 -92.71 -0.60 8.36 16 32 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.20 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -90.29 314.20 2.74 -87.55 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.47 Total: 6.39 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.06 Total: 24.07 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -4.93 Total: -131.88 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.06 Total: -32.24 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -0.69 Total: -1.56 kcal Total: -90.29 2.74 -87.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276052801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.352 kcal (2) G-P(sol) polarization free energy of solvation -90.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds