Wall clock time and date at job start Tue Mar 31 2020 15:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48506 * 109.47038 * 274.99471 * 3 2 1 5 5 H 1.48501 * 109.47326 * 34.99091 * 3 2 1 6 6 H 1.48492 * 109.47049 * 154.99450 * 3 2 1 7 7 C 1.40048 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99651 * 185.31655 * 7 2 1 9 9 C 1.46367 * 120.00123 * 5.31709 * 7 2 1 10 10 O 1.21687 * 120.00491 * 354.70944 * 9 7 2 11 11 N 1.34777 * 120.00064 * 174.70701 * 9 7 2 12 12 C 1.46504 * 120.00566 * 179.97438 * 11 9 7 13 13 C 1.52991 * 109.47386 * 185.75608 * 12 11 9 14 14 C 1.50697 * 112.91337 * 316.91911 * 13 12 11 15 15 C 1.38334 * 120.01217 * 86.93135 * 14 13 12 16 16 Cl 1.73601 * 120.00735 * 0.02562 * 15 14 13 17 17 C 1.38361 * 119.98440 * 179.79824 * 15 14 13 18 18 C 1.38218 * 120.01650 * 0.46040 * 17 15 14 19 19 C 1.38224 * 120.02272 * 359.79553 * 18 17 15 20 20 C 1.38332 * 120.01440 * 267.21873 * 14 13 12 21 21 Cl 1.73602 * 120.00372 * 359.97438 * 20 14 13 22 22 C 1.53777 * 113.61535 * 185.66598 * 13 12 11 23 23 C 1.53786 * 87.17738 * 270.93014 * 22 13 12 24 24 C 1.53789 * 87.07751 * 334.52128 * 23 22 13 25 25 H 0.96990 * 120.00277 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99963 * 0.02562 * 11 9 7 27 27 H 1.09004 * 109.46653 * 65.75827 * 12 11 9 28 28 H 1.08997 * 109.46849 * 305.76123 * 12 11 9 29 29 H 1.07998 * 119.99345 * 180.25587 * 17 15 14 30 30 H 1.07997 * 119.98994 * 179.76664 * 18 17 15 31 31 H 1.07999 * 119.99296 * 179.97438 * 19 18 17 32 32 H 1.09003 * 113.61885 * 156.33890 * 22 13 12 33 33 H 1.09000 * 113.61456 * 25.51655 * 22 13 12 34 34 H 1.08997 * 113.61467 * 89.06801 * 23 22 13 35 35 H 1.08999 * 113.61388 * 219.89411 * 23 22 13 36 36 H 1.08995 * 113.61199 * 139.97927 * 24 23 22 37 37 H 1.08996 * 113.61638 * 270.80336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3826 2.1074 -1.3948 5 1 1.4948 2.6200 0.8029 6 1 3.5870 1.4121 0.5918 7 6 2.0070 -1.2129 0.0005 8 1 3.0835 -1.2148 0.0872 9 6 1.2799 -2.4778 -0.1164 10 8 0.0630 -2.4824 -0.1171 11 7 1.9581 -3.6375 -0.2233 12 6 1.2305 -4.9038 -0.3397 13 6 2.2227 -6.0676 -0.3018 14 6 3.4523 -5.8178 -1.1366 15 6 4.5357 -5.1528 -0.5910 16 17 4.4795 -4.6064 1.0558 17 6 5.6658 -4.9275 -1.3567 18 6 5.7089 -5.3582 -2.6693 19 6 4.6246 -6.0180 -3.2166 20 6 3.4957 -6.2481 -2.4506 21 17 2.1339 -7.0767 -3.1381 22 6 1.5741 -7.4386 -0.5555 23 6 1.3364 -7.5220 0.9616 24 6 2.5324 -6.5684 1.1219 25 1 -0.4850 0.8399 -0.0004 26 1 2.9282 -3.6340 -0.2224 27 1 0.6836 -4.9231 -1.2825 28 1 0.5289 -4.9972 0.4892 29 1 6.5133 -4.4120 -0.9296 30 1 6.5898 -5.1787 -3.2677 31 1 4.6586 -6.3540 -4.2425 32 1 2.2707 -8.1887 -0.9301 33 1 0.6551 -7.3856 -1.1391 34 1 0.3877 -7.0896 1.2793 35 1 1.5093 -8.5149 1.3768 36 1 2.3869 -5.8114 1.8924 37 1 3.4907 -7.0806 1.2072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278770002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:09 Heat of formation + Delta-G solvation = -0.714725 kcal Electronic energy + Delta-G solvation = -23910.521435 eV Core-core repulsion = 20319.266186 eV Total energy + Delta-G solvation = -3591.255249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61568 -38.23046 -36.88314 -36.65971 -36.18643 -32.99545 -32.16709 -31.08745 -30.66561 -27.56572 -25.89292 -25.59368 -23.73226 -22.62707 -21.71473 -19.60847 -18.84753 -17.36782 -17.03896 -16.02331 -15.84656 -15.33200 -15.11576 -14.53603 -14.36187 -14.17170 -13.91101 -13.67672 -13.32765 -12.66903 -12.59756 -12.26657 -12.12648 -11.85515 -11.62437 -11.55471 -11.38799 -11.19654 -11.12289 -11.05340 -10.90530 -10.64718 -10.43000 -10.23202 -10.13746 -10.01334 -9.73548 -8.78899 -8.74935 -8.74047 -7.51942 -7.35925 -6.12212 -4.55474 0.92957 1.02651 1.89784 2.32448 3.16986 3.23914 3.27626 3.37455 4.14822 4.39865 4.43840 4.67146 4.72172 4.77463 4.95968 4.97931 5.08561 5.11221 5.31433 5.35023 5.52811 5.72203 5.80893 5.84976 5.90621 5.97816 6.00919 6.08860 6.10108 6.23447 6.31852 6.44410 6.48360 6.58840 6.65925 7.50311 8.03831 8.20567 8.42320 9.09908 9.64328 10.67957 10.87870 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.004976 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.202211 B = 5625.880332 C = 6017.733798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.557 3.443 10 O -0.583 6.583 11 N -0.766 5.766 12 C 0.164 3.836 13 C -0.059 4.059 14 C -0.037 4.037 15 C -0.029 4.029 16 Cl -0.037 7.037 17 C -0.103 4.103 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.020 4.020 21 Cl -0.054 7.054 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.121 4.121 25 H 0.267 0.733 26 H 0.378 0.622 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -15.216 -3.477 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.425 5.425 12 C 0.039 3.961 13 C -0.060 4.060 14 C -0.039 4.039 15 C -0.056 4.056 16 Cl -0.007 7.007 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.047 4.047 21 Cl -0.025 7.025 22 C -0.156 4.156 23 C -0.184 4.184 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.214 0.786 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.667 -15.137 -3.379 18.824 hybrid contribution 0.879 0.896 -0.058 1.256 sum 11.546 -14.241 -3.437 18.653 Atomic orbital electron populations 1.70030 1.06997 1.27045 1.35695 1.25677 0.94551 1.00116 0.92691 0.86435 0.80342 0.81796 0.78659 1.19833 1.20452 1.18883 1.20857 0.93834 0.89608 1.53801 0.91683 1.18173 0.87102 0.82434 0.76273 1.90586 1.14114 1.86676 1.55243 1.46396 1.09081 1.05184 1.81874 1.20584 0.92197 0.82442 1.00922 1.21315 0.92577 0.96615 0.95477 1.19408 0.95227 0.96423 0.92857 1.20728 0.95544 1.01071 0.88282 1.98409 1.97993 1.87591 1.16753 1.21166 0.97170 0.99711 0.94087 1.21008 0.98605 0.98063 0.94613 1.21120 0.91956 0.99248 1.00172 1.20598 0.90366 1.00827 0.92881 1.98367 1.43604 1.76462 1.84043 1.23145 1.00923 0.94983 0.96528 1.22924 0.99220 0.99588 0.96714 1.23157 0.98235 0.98811 0.95640 0.92250 0.78593 0.93229 0.92021 0.84253 0.84281 0.84504 0.89841 0.90670 0.89771 0.91547 0.90355 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.57 11.85 55.55 0.66 -22.92 16 2 C 0.09 2.55 5.50 -17.36 -0.10 2.45 16 3 Si 0.90 20.62 29.56 -169.99 -5.03 15.60 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -15.88 9.54 -35.63 -0.34 -16.22 16 8 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.39 7.74 -12.99 -0.10 16.29 16 10 O -0.58 -19.38 15.03 5.20 0.08 -19.30 16 11 N -0.77 -18.07 5.15 -61.72 -0.32 -18.39 16 12 C 0.16 3.33 5.09 -4.04 -0.02 3.31 16 13 C -0.06 -0.91 0.48 -154.71 -0.07 -0.99 16 14 C -0.04 -0.56 4.31 -104.55 -0.45 -1.01 16 15 C -0.03 -0.42 5.01 -39.50 -0.20 -0.61 16 16 Cl -0.04 -0.55 22.92 -51.86 -1.19 -1.74 16 17 C -0.10 -1.20 9.83 -39.54 -0.39 -1.59 16 18 C -0.10 -1.06 10.04 -39.59 -0.40 -1.46 16 19 C -0.11 -1.18 9.83 -39.54 -0.39 -1.57 16 20 C -0.02 -0.27 6.13 -39.50 -0.24 -0.51 16 21 Cl -0.05 -0.69 24.48 -51.86 -1.27 -1.96 16 22 C -0.12 -1.52 4.72 -25.92 -0.12 -1.64 16 23 C -0.15 -1.82 7.74 -25.91 -0.20 -2.02 16 24 C -0.12 -1.68 4.78 -25.77 -0.12 -1.80 16 25 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 26 H 0.38 8.11 3.95 -40.82 -0.16 7.95 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.32 7.38 -51.93 -0.38 0.94 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.08 0.98 7.18 -51.93 -0.37 0.61 16 33 H 0.07 0.99 7.39 -51.93 -0.38 0.61 16 34 H 0.08 1.09 7.73 -51.93 -0.40 0.69 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.21 7.41 -51.93 -0.38 0.82 16 37 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -34.84 326.41 -9.44 -44.28 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.15 Total: 6.88 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.14 Total: -7.37 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.34 Total: -41.30 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.46 Total: -3.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.84 -9.44 -44.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278770002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.560 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds