Wall clock time and date at job start Tue Mar 31 2020 15:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48506 * 109.47038 * 274.99471 * 3 2 1 5 5 H 1.48501 * 109.47326 * 34.99091 * 3 2 1 6 6 H 1.48492 * 109.47049 * 154.99450 * 3 2 1 7 7 C 1.40048 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99651 * 185.31655 * 7 2 1 9 9 C 1.46367 * 120.00123 * 5.31709 * 7 2 1 10 10 O 1.21687 * 120.00491 * 354.70944 * 9 7 2 11 11 N 1.34777 * 120.00064 * 174.70701 * 9 7 2 12 12 C 1.46504 * 120.00566 * 179.97438 * 11 9 7 13 13 C 1.52991 * 109.47386 * 185.75608 * 12 11 9 14 14 C 1.50697 * 112.91337 * 316.91911 * 13 12 11 15 15 C 1.38334 * 120.01217 * 86.93135 * 14 13 12 16 16 Cl 1.73601 * 120.00735 * 0.02562 * 15 14 13 17 17 C 1.38361 * 119.98440 * 179.79824 * 15 14 13 18 18 C 1.38218 * 120.01650 * 0.46040 * 17 15 14 19 19 C 1.38224 * 120.02272 * 359.79553 * 18 17 15 20 20 C 1.38332 * 120.01440 * 267.21873 * 14 13 12 21 21 Cl 1.73602 * 120.00372 * 359.97438 * 20 14 13 22 22 C 1.53777 * 113.61535 * 185.66598 * 13 12 11 23 23 C 1.53786 * 87.17738 * 270.93014 * 22 13 12 24 24 C 1.53789 * 87.07751 * 334.52128 * 23 22 13 25 25 H 0.96990 * 120.00277 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99963 * 0.02562 * 11 9 7 27 27 H 1.09004 * 109.46653 * 65.75827 * 12 11 9 28 28 H 1.08997 * 109.46849 * 305.76123 * 12 11 9 29 29 H 1.07998 * 119.99345 * 180.25587 * 17 15 14 30 30 H 1.07997 * 119.98994 * 179.76664 * 18 17 15 31 31 H 1.07999 * 119.99296 * 179.97438 * 19 18 17 32 32 H 1.09003 * 113.61885 * 156.33890 * 22 13 12 33 33 H 1.09000 * 113.61456 * 25.51655 * 22 13 12 34 34 H 1.08997 * 113.61467 * 89.06801 * 23 22 13 35 35 H 1.08999 * 113.61388 * 219.89411 * 23 22 13 36 36 H 1.08995 * 113.61199 * 139.97927 * 24 23 22 37 37 H 1.08996 * 113.61638 * 270.80336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3826 2.1074 -1.3948 5 1 1.4948 2.6200 0.8029 6 1 3.5870 1.4121 0.5918 7 6 2.0070 -1.2129 0.0005 8 1 3.0835 -1.2148 0.0872 9 6 1.2799 -2.4778 -0.1164 10 8 0.0630 -2.4824 -0.1171 11 7 1.9581 -3.6375 -0.2233 12 6 1.2305 -4.9038 -0.3397 13 6 2.2227 -6.0676 -0.3018 14 6 3.4523 -5.8178 -1.1366 15 6 4.5357 -5.1528 -0.5910 16 17 4.4795 -4.6064 1.0558 17 6 5.6658 -4.9275 -1.3567 18 6 5.7089 -5.3582 -2.6693 19 6 4.6246 -6.0180 -3.2166 20 6 3.4957 -6.2481 -2.4506 21 17 2.1339 -7.0767 -3.1381 22 6 1.5741 -7.4386 -0.5555 23 6 1.3364 -7.5220 0.9616 24 6 2.5324 -6.5684 1.1219 25 1 -0.4850 0.8399 -0.0004 26 1 2.9282 -3.6340 -0.2224 27 1 0.6836 -4.9231 -1.2825 28 1 0.5289 -4.9972 0.4892 29 1 6.5133 -4.4120 -0.9296 30 1 6.5898 -5.1787 -3.2677 31 1 4.6586 -6.3540 -4.2425 32 1 2.2707 -8.1887 -0.9301 33 1 0.6551 -7.3856 -1.1391 34 1 0.3877 -7.0896 1.2793 35 1 1.5093 -8.5149 1.3768 36 1 2.3869 -5.8114 1.8924 37 1 3.4907 -7.0806 1.2072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278770002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:08 Heat of formation + Delta-G solvation = -22.333009 kcal Electronic energy + Delta-G solvation = -23911.458874 eV Core-core repulsion = 20319.266186 eV Total energy + Delta-G solvation = -3592.192688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75631 -39.42276 -38.82642 -37.77161 -37.22182 -34.99075 -34.28843 -32.20107 -31.61187 -29.42983 -27.51402 -26.86962 -25.08686 -23.59989 -22.76078 -21.68765 -20.18961 -19.02356 -18.27697 -17.47702 -17.17524 -16.85737 -16.38985 -15.93688 -15.82140 -15.37030 -15.31888 -15.17591 -14.81370 -14.25695 -13.88815 -13.69238 -13.51147 -13.12077 -12.96370 -12.88755 -12.78099 -12.72238 -12.55754 -12.47266 -12.22519 -12.11013 -12.02920 -11.90772 -11.43137 -11.12186 -10.93317 -10.83505 -9.85529 -9.79275 -9.71621 -9.41398 -8.29451 -6.84710 -0.01961 0.05802 0.87917 1.29886 1.37816 1.39593 1.55320 2.24075 2.43402 2.47878 3.03738 3.33811 3.54695 3.64280 3.71994 3.80488 3.90951 3.92705 4.17750 4.24766 4.41787 4.46924 4.56122 4.69950 4.76085 4.82593 4.89864 5.00204 5.05213 5.13169 5.19508 5.22015 5.25401 5.31118 5.48447 5.61666 5.88572 6.23687 6.28880 6.86728 7.56239 8.50277 8.68153 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.004976 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.202211 B = 5625.880332 C = 6017.733798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.539 3.461 10 O -0.634 6.634 11 N -0.752 5.752 12 C 0.168 3.832 13 C -0.060 4.060 14 C -0.063 4.063 15 C -0.049 4.049 16 Cl -0.055 7.055 17 C -0.104 4.104 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.035 4.035 21 Cl -0.056 7.056 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.116 4.116 25 H 0.274 0.726 26 H 0.391 0.609 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.161 0.839 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.011 -15.302 -4.588 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.098 0.902 9 C 0.343 3.657 10 O -0.522 6.522 11 N -0.410 5.410 12 C 0.043 3.957 13 C -0.061 4.061 14 C -0.064 4.064 15 C -0.076 4.076 16 Cl -0.026 7.026 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.062 4.062 21 Cl -0.027 7.027 22 C -0.144 4.144 23 C -0.179 4.179 24 C -0.153 4.153 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.178 0.822 30 H 0.198 0.802 31 H 0.181 0.819 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.844 -15.276 -4.492 21.100 hybrid contribution -0.069 0.858 0.226 0.889 sum 13.776 -14.419 -4.265 20.393 Atomic orbital electron populations 1.70194 1.09500 1.28876 1.36487 1.26949 0.95500 1.04810 0.91199 0.85076 0.79043 0.75279 0.79360 1.18550 1.19505 1.17105 1.21336 0.94702 0.90335 1.54428 0.90171 1.18595 0.86762 0.84305 0.76078 1.90535 1.16187 1.87782 1.57672 1.46118 1.09704 1.05047 1.80165 1.20559 0.93144 0.83144 0.98896 1.21121 0.92283 0.95485 0.97205 1.19395 0.95111 0.98281 0.93631 1.20958 0.96680 1.02122 0.87841 1.98399 1.98036 1.87866 1.18283 1.21534 0.96833 0.99321 0.94615 1.21504 0.99396 0.95902 0.94043 1.21533 0.91160 0.98359 1.01161 1.20829 0.91219 1.01379 0.92730 1.98364 1.43962 1.76477 1.83894 1.23107 1.00756 0.93714 0.96843 1.22907 0.98007 1.00536 0.96418 1.23120 0.99653 0.98606 0.93916 0.91575 0.77108 0.95195 0.94120 0.82151 0.80228 0.81868 0.87999 0.91291 0.91046 0.88810 0.92526 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.74 11.85 21.84 0.26 -51.48 16 2 C 0.03 1.75 5.50 85.30 0.47 2.22 16 3 Si 0.99 42.05 29.56 68.60 2.03 44.08 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.57 -33.92 9.54 24.83 0.24 -33.68 16 8 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.54 33.04 7.74 86.36 0.67 33.71 16 10 O -0.63 -44.45 15.03 -4.31 -0.06 -44.51 16 11 N -0.75 -36.84 5.15 -467.42 -2.41 -39.25 16 12 C 0.17 7.18 5.09 86.38 0.44 7.62 16 13 C -0.06 -1.89 0.48 -52.31 -0.03 -1.91 16 14 C -0.06 -1.81 4.31 -19.82 -0.09 -1.89 16 15 C -0.05 -1.34 5.01 22.32 0.11 -1.23 16 16 Cl -0.05 -1.64 22.92 -2.72 -0.06 -1.70 16 17 C -0.10 -2.16 9.83 22.29 0.22 -1.94 16 18 C -0.09 -1.48 10.04 22.26 0.22 -1.26 16 19 C -0.10 -1.98 9.83 22.29 0.22 -1.76 16 20 C -0.03 -0.88 6.13 22.32 0.14 -0.74 16 21 Cl -0.06 -1.38 24.48 -2.72 -0.07 -1.45 16 22 C -0.11 -2.71 4.72 31.12 0.15 -2.56 16 23 C -0.14 -3.45 7.74 31.12 0.24 -3.21 16 24 C -0.12 -3.21 4.78 31.22 0.15 -3.06 16 25 H 0.27 15.59 8.29 -92.72 -0.77 14.82 16 26 H 0.39 17.09 3.95 -92.70 -0.37 16.73 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.04 1.88 7.38 -2.39 -0.02 1.86 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.10 2.24 7.18 -2.39 -0.02 2.22 16 33 H 0.07 1.84 7.39 -2.39 -0.02 1.82 16 34 H 0.07 1.92 7.73 -2.39 -0.02 1.90 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.81 7.41 -2.39 -0.02 1.79 16 37 H 0.10 2.35 7.73 -2.39 -0.02 2.33 16 Total: -1.00 -79.53 326.41 3.59 -75.95 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.75 Total: 28.07 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.15 Total: -9.70 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.15 Total: -90.73 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.06 Total: -44.51 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -3.02 SS G_CDS: -0.13 Total: -3.15 kcal Total: -79.53 3.59 -75.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278770002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.615 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds