Wall clock time and date at job start Tue Mar 31 2020 14:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46880 * 2 1 4 4 O 1.21260 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.39929 * 120.12669 * 0.02562 * 5 3 2 7 7 C 1.37851 * 119.97405 * 180.02562 * 6 5 3 8 8 C 1.38434 * 120.23946 * 0.02562 * 7 6 5 9 9 Cl 1.73606 * 119.87041 * 179.97438 * 8 7 6 10 10 C 1.39138 * 120.25850 * 359.97438 * 8 7 6 11 11 N 1.40008 * 119.99261 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00055 * 214.99469 * 11 10 8 13 13 O 1.21288 * 120.00108 * 355.50121 * 12 11 10 14 14 C 1.50697 * 120.00299 * 175.49931 * 12 11 10 15 15 S 1.80997 * 109.47494 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00454 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99683 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00186 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.46991 * 90.00125 * 20 18 16 22 22 H 1.48502 * 109.47147 * 210.00233 * 20 18 16 23 23 H 1.48495 * 109.46975 * 330.00125 * 20 18 16 24 24 C 1.38474 * 120.01694 * 0.26783 * 10 8 7 25 25 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47398 * 299.99630 * 1 2 3 27 27 H 1.09000 * 109.47333 * 60.00307 * 1 2 3 28 28 H 1.09001 * 109.47398 * 240.00370 * 2 1 3 29 29 H 1.09000 * 109.47333 * 119.99693 * 2 1 3 30 30 H 1.07994 * 120.01072 * 0.02562 * 6 5 3 31 31 H 1.07999 * 119.87969 * 180.02562 * 7 6 5 32 32 H 0.97002 * 119.99884 * 34.98647 * 11 10 8 33 33 H 1.08999 * 109.47580 * 300.00160 * 14 12 11 34 34 H 1.09002 * 109.47154 * 59.99843 * 14 12 11 35 35 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.11879 * 179.72775 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3425 -0.0005 5 6 3.4785 1.6897 0.0006 6 6 4.3902 0.6282 0.0006 7 6 5.7448 0.8837 0.0016 8 6 6.2082 2.1882 0.0032 9 17 7.9162 2.4990 0.0053 10 6 5.3104 3.2512 0.0033 11 7 5.7852 4.5683 0.0044 12 6 5.1138 5.5261 0.6738 13 8 4.0560 5.2653 1.2070 14 6 5.6772 6.9211 0.7601 15 16 4.5524 7.9681 1.7164 16 6 5.4320 9.4938 1.6600 17 1 6.3740 9.5549 1.1352 18 6 4.9144 10.6171 2.2898 19 7 5.5713 11.7570 2.2472 20 14 3.2847 10.5116 3.1969 21 1 3.5296 10.1364 4.6126 22 1 2.6031 11.8299 3.1449 23 1 2.4261 9.4847 2.5541 24 6 3.9474 3.0067 0.0073 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0327 -0.3909 -0.0003 31 1 6.4471 0.0633 0.0012 32 1 6.5975 4.7914 -0.4767 33 1 6.6503 6.8903 1.2501 34 1 5.7888 7.3306 -0.2439 35 1 5.2093 12.5421 2.6871 36 1 3.2491 3.8306 0.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279686735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:40 Heat of formation + Delta-G solvation = -58.438172 kcal Electronic energy + Delta-G solvation = -21918.074429 eV Core-core repulsion = 18326.359810 eV Total energy + Delta-G solvation = -3591.714619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86761 -39.69518 -38.32189 -36.76053 -34.92788 -33.20554 -32.47799 -31.34471 -30.91472 -28.63427 -25.87191 -25.66075 -23.37251 -23.00665 -20.77663 -19.90507 -18.28624 -17.74983 -16.90858 -16.70700 -16.22113 -15.83699 -15.68838 -15.23546 -15.00160 -14.63692 -14.25417 -13.96930 -13.86309 -13.61123 -13.30704 -12.88891 -12.83495 -12.59489 -12.37933 -12.35292 -11.93274 -11.75019 -11.48222 -11.33212 -11.28939 -11.03806 -10.71134 -10.64117 -9.96964 -9.90276 -9.72323 -9.16806 -9.04029 -8.57826 -8.46599 -6.98431 -6.32573 -4.05705 0.19386 0.92164 1.69502 2.01203 2.52957 2.69173 3.09162 3.31085 3.38717 3.48310 3.51757 3.68613 4.29595 4.33419 4.55196 4.56362 4.70086 4.76867 4.77801 4.94145 4.95260 5.06501 5.13499 5.30101 5.45112 5.49714 5.61449 5.61761 5.70856 5.81036 5.88792 5.89239 5.93476 6.11177 6.54477 7.18727 7.30568 7.90309 8.12126 8.37814 9.13207 10.76527 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003322 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.482780 B = 8425.950513 C =10476.249055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C 0.391 3.609 4 O -0.437 6.437 5 C -0.149 4.149 6 C -0.085 4.085 7 C -0.104 4.104 8 C -0.042 4.042 9 Cl -0.057 7.057 10 C 0.158 3.842 11 N -0.677 5.677 12 C 0.532 3.468 13 O -0.492 6.492 14 C -0.124 4.124 15 S -0.135 6.135 16 C -0.523 4.523 17 H 0.090 0.910 18 C 0.097 3.903 19 N -0.879 5.879 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.235 1.235 24 C -0.056 4.056 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.415 0.585 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.271 0.729 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -27.614 -7.485 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.267 3.733 4 O -0.310 6.310 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.123 4.123 8 C -0.071 4.071 9 Cl -0.028 7.028 10 C 0.062 3.938 11 N -0.324 5.324 12 C 0.320 3.680 13 O -0.364 6.364 14 C -0.275 4.275 15 S 0.091 5.909 16 C -0.670 4.670 17 H 0.108 0.892 18 C -0.112 4.112 19 N -0.515 5.515 20 Si 0.680 3.320 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.159 1.159 24 C -0.076 4.076 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.827 -27.213 -6.518 28.043 hybrid contribution 1.531 0.660 -0.371 1.708 sum -0.296 -26.554 -6.889 27.434 Atomic orbital electron populations 1.21610 0.93499 1.01832 1.03375 1.21980 0.98516 0.95383 1.04609 1.22483 0.87466 0.91465 0.71855 1.90591 1.58044 1.47703 1.34678 1.20549 0.95580 0.93580 1.05323 1.21305 0.91851 0.98990 0.98264 1.20813 0.96091 0.94334 1.01095 1.21096 0.84878 0.94155 1.07006 1.98388 1.11599 1.96040 1.96747 1.17417 0.91887 0.83913 1.00617 1.43683 1.30002 1.05736 1.52987 1.20604 0.84435 0.86315 0.76690 1.90734 1.20858 1.81122 1.43667 1.23284 1.04776 0.93210 1.06203 1.84859 1.30215 1.06643 1.69209 1.22286 1.10366 0.93418 1.40977 0.89245 1.24702 0.97506 0.94137 0.94881 1.69936 1.38629 1.00483 1.42449 0.86750 0.84286 0.79387 0.81538 1.19151 1.19825 1.15896 1.21685 0.93863 0.97706 0.94361 0.91982 0.91930 0.92011 0.88252 0.88217 0.84087 0.83940 0.74823 0.87845 0.87840 0.91861 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.17 -1.10 5.03 -27.88 -0.14 -1.24 16 3 C 0.39 4.32 7.11 -30.71 -0.22 4.10 16 4 O -0.44 -6.68 15.97 5.57 0.09 -6.59 16 5 C -0.15 -1.63 5.87 -105.08 -0.62 -2.25 16 6 C -0.08 -0.64 9.47 -39.09 -0.37 -1.01 16 7 C -0.10 -0.83 9.80 -39.65 -0.39 -1.22 16 8 C -0.04 -0.43 6.35 -39.18 -0.25 -0.68 16 9 Cl -0.06 -0.54 27.93 -51.86 -1.45 -1.98 16 10 C 0.16 2.03 6.30 -83.70 -0.53 1.51 16 11 N -0.68 -9.00 5.04 -9.87 -0.05 -9.04 16 12 C 0.53 9.23 7.69 -10.99 -0.08 9.15 16 13 O -0.49 -10.24 13.28 5.55 0.07 -10.17 16 14 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 15 S -0.14 -3.37 18.55 -107.50 -1.99 -5.37 16 16 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 20 Si 0.86 21.70 27.74 -169.99 -4.72 16.99 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 24 C -0.06 -0.78 8.24 -38.91 -0.32 -1.10 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.14 0.55 7.04 -52.49 -0.37 0.18 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.41 4.38 8.07 -40.82 -0.33 4.05 16 33 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.16 2.80 5.78 -52.49 -0.30 2.49 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -34.60 342.26 -8.20 -42.80 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.95 Total: 1.22 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.14 Total: -7.41 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.73 Total: -34.64 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.16 Total: -16.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.45 Total: -1.98 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.60 -8.20 -42.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279686735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds