Wall clock time and date at job start Tue Mar 31 2020 14:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46880 * 2 1 4 4 O 1.21260 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.39929 * 120.12669 * 0.02562 * 5 3 2 7 7 C 1.37851 * 119.97405 * 180.02562 * 6 5 3 8 8 C 1.38434 * 120.23946 * 0.02562 * 7 6 5 9 9 Cl 1.73606 * 119.87041 * 179.97438 * 8 7 6 10 10 C 1.39138 * 120.25850 * 359.97438 * 8 7 6 11 11 N 1.40008 * 119.99261 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00055 * 214.99469 * 11 10 8 13 13 O 1.21288 * 120.00108 * 355.50121 * 12 11 10 14 14 C 1.50697 * 120.00299 * 175.49931 * 12 11 10 15 15 S 1.80997 * 109.47494 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00454 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99683 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00186 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.46991 * 90.00125 * 20 18 16 22 22 H 1.48502 * 109.47147 * 210.00233 * 20 18 16 23 23 H 1.48495 * 109.46975 * 330.00125 * 20 18 16 24 24 C 1.38474 * 120.01694 * 0.26783 * 10 8 7 25 25 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47398 * 299.99630 * 1 2 3 27 27 H 1.09000 * 109.47333 * 60.00307 * 1 2 3 28 28 H 1.09001 * 109.47398 * 240.00370 * 2 1 3 29 29 H 1.09000 * 109.47333 * 119.99693 * 2 1 3 30 30 H 1.07994 * 120.01072 * 0.02562 * 6 5 3 31 31 H 1.07999 * 119.87969 * 180.02562 * 7 6 5 32 32 H 0.97002 * 119.99884 * 34.98647 * 11 10 8 33 33 H 1.08999 * 109.47580 * 300.00160 * 14 12 11 34 34 H 1.09002 * 109.47154 * 59.99843 * 14 12 11 35 35 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.11879 * 179.72775 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3425 -0.0005 5 6 3.4785 1.6897 0.0006 6 6 4.3902 0.6282 0.0006 7 6 5.7448 0.8837 0.0016 8 6 6.2082 2.1882 0.0032 9 17 7.9162 2.4990 0.0053 10 6 5.3104 3.2512 0.0033 11 7 5.7852 4.5683 0.0044 12 6 5.1138 5.5261 0.6738 13 8 4.0560 5.2653 1.2070 14 6 5.6772 6.9211 0.7601 15 16 4.5524 7.9681 1.7164 16 6 5.4320 9.4938 1.6600 17 1 6.3740 9.5549 1.1352 18 6 4.9144 10.6171 2.2898 19 7 5.5713 11.7570 2.2472 20 14 3.2847 10.5116 3.1969 21 1 3.5296 10.1364 4.6126 22 1 2.6031 11.8299 3.1449 23 1 2.4261 9.4847 2.5541 24 6 3.9474 3.0067 0.0073 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0327 -0.3909 -0.0003 31 1 6.4471 0.0633 0.0012 32 1 6.5975 4.7914 -0.4767 33 1 6.6503 6.8903 1.2501 34 1 5.7888 7.3306 -0.2439 35 1 5.2093 12.5421 2.6871 36 1 3.2491 3.8306 0.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279686735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:39 Heat of formation + Delta-G solvation = -81.274995 kcal Electronic energy + Delta-G solvation = -21919.064708 eV Core-core repulsion = 18326.359810 eV Total energy + Delta-G solvation = -3592.704898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90032 -40.73082 -39.31486 -37.54745 -36.07682 -34.70743 -33.86811 -32.19846 -32.04678 -29.84106 -27.89093 -26.62788 -24.28989 -23.74798 -21.95103 -20.79498 -19.98436 -18.93186 -18.21166 -17.63254 -17.19751 -17.14223 -16.86201 -16.44539 -16.33141 -15.90551 -15.53601 -15.23246 -14.93078 -14.84208 -14.68195 -14.13864 -13.84385 -13.55598 -13.40425 -13.16664 -13.11870 -13.05925 -12.75912 -12.59979 -12.52709 -12.09758 -12.00193 -11.91408 -11.70610 -11.20695 -11.11319 -10.77919 -10.60223 -9.99652 -9.41574 -9.05172 -8.55078 -6.26748 -0.62427 0.07296 0.85022 0.92883 1.14794 1.28048 1.38045 1.44252 1.49638 1.93186 2.21284 2.57254 2.62471 2.83250 2.93139 3.55249 3.59759 3.87302 4.06566 4.09477 4.12548 4.14906 4.31173 4.32950 4.37015 4.67496 4.72820 4.93091 5.02086 5.02304 5.08095 5.14685 5.23226 5.35810 5.62409 5.67620 6.07213 6.08647 6.52973 6.84723 6.90157 8.57277 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003322 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.482780 B = 8425.950513 C =10476.249055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 C 0.387 3.613 4 O -0.498 6.498 5 C -0.163 4.163 6 C -0.053 4.053 7 C -0.094 4.094 8 C -0.038 4.038 9 Cl -0.048 7.048 10 C 0.129 3.871 11 N -0.659 5.659 12 C 0.537 3.463 13 O -0.533 6.533 14 C -0.110 4.110 15 S -0.172 6.172 16 C -0.528 4.528 17 H 0.066 0.934 18 C 0.048 3.952 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.240 1.240 24 C -0.085 4.085 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.194 0.806 31 H 0.183 0.817 32 H 0.427 0.573 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.278 0.722 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -32.041 -7.823 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.268 3.732 4 O -0.375 6.375 5 C -0.165 4.165 6 C -0.072 4.072 7 C -0.113 4.113 8 C -0.067 4.067 9 Cl -0.019 7.019 10 C 0.034 3.966 11 N -0.307 5.307 12 C 0.325 3.675 13 O -0.409 6.409 14 C -0.261 4.261 15 S 0.054 5.946 16 C -0.676 4.676 17 H 0.084 0.916 18 C -0.158 4.158 19 N -0.553 5.553 20 Si 0.734 3.266 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.164 1.164 24 C -0.106 4.106 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.211 0.789 31 H 0.200 0.800 32 H 0.267 0.733 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.868 -31.680 -6.886 32.432 hybrid contribution 1.378 1.838 -0.372 2.327 sum 0.510 -29.842 -7.257 30.716 Atomic orbital electron populations 1.21643 0.94575 1.02970 1.01470 1.22097 0.97574 0.92190 1.07679 1.23346 0.87205 0.93105 0.69579 1.90581 1.59283 1.49893 1.37775 1.20773 0.96491 0.93311 1.05923 1.21843 0.90943 1.00119 0.94285 1.21359 0.97004 0.94083 0.98827 1.21259 0.84976 0.94424 1.06078 1.98398 1.10675 1.96139 1.96643 1.17491 0.92057 0.83813 1.03230 1.43304 1.29735 1.05710 1.51910 1.20248 0.84034 0.86357 0.76910 1.90739 1.22587 1.81699 1.45866 1.23240 1.03697 0.93041 1.06081 1.84808 1.32420 1.06279 1.71048 1.22424 1.09733 0.95191 1.40207 0.91594 1.25517 1.00602 0.93937 0.95737 1.70008 1.40329 1.01272 1.43657 0.85910 0.80571 0.79799 0.80364 1.18619 1.18178 1.16383 1.21458 0.93881 0.98246 0.97008 0.89121 0.94204 0.93779 0.84510 0.85021 0.78891 0.79963 0.73328 0.86036 0.86048 0.91287 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.20 71.98 0.66 -1.30 16 2 C -0.16 -1.51 5.03 29.85 0.15 -1.36 16 3 C 0.39 8.30 7.11 28.02 0.20 8.50 16 4 O -0.50 -16.32 15.97 -2.97 -0.05 -16.36 16 5 C -0.16 -3.35 5.87 -20.16 -0.12 -3.47 16 6 C -0.05 -0.55 9.47 22.59 0.21 -0.33 16 7 C -0.09 -1.03 9.80 22.22 0.22 -0.81 16 8 C -0.04 -0.68 6.35 22.53 0.14 -0.54 16 9 Cl -0.05 -0.77 27.93 -2.72 -0.08 -0.85 16 10 C 0.13 3.27 6.30 38.11 0.24 3.51 16 11 N -0.66 -17.51 5.04 -303.54 -1.53 -19.04 16 12 C 0.54 19.14 7.69 87.66 0.67 19.81 16 13 O -0.53 -23.43 13.28 -3.05 -0.04 -23.47 16 14 C -0.11 -4.15 6.16 71.23 0.44 -3.71 16 15 S -0.17 -8.77 18.55 -56.49 -1.05 -9.82 16 16 C -0.53 -30.78 10.04 67.95 0.68 -30.09 16 17 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 18 C 0.05 2.82 5.50 84.86 0.47 3.29 16 19 N -0.91 -55.90 13.97 21.65 0.30 -55.59 16 20 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 21 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.24 -12.09 6.74 99.48 0.67 -11.42 16 24 C -0.09 -2.46 8.24 22.70 0.19 -2.28 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 27 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 28 H 0.14 0.35 8.08 -2.39 -0.02 0.34 16 29 H 0.13 0.50 8.08 -2.39 -0.02 0.48 16 30 H 0.19 -0.01 7.04 -2.91 -0.02 -0.03 16 31 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.43 8.70 8.07 -92.71 -0.75 7.95 16 33 H 0.12 4.15 8.14 -2.40 -0.02 4.13 16 34 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 35 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.12 4.51 5.78 -2.91 -0.02 4.49 16 Total: -1.00 -82.19 342.26 3.97 -78.22 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.35 Total: 8.22 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.16 Total: -8.79 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.23 Total: -74.63 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.09 Total: -39.83 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -82.19 3.97 -78.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279686735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.055 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds