Wall clock time and date at job start Tue Mar 31 2020 14:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38352 * 127.14907 * 2 1 4 4 C 1.39771 * 126.56951 * 0.03255 * 3 2 1 5 5 H 1.08000 * 120.00035 * 0.26039 * 4 3 2 6 6 C 1.40080 * 120.00217 * 180.26344 * 4 3 2 7 7 N 1.30817 * 119.99940 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47264 * 59.99754 * 8 6 4 10 10 H 1.48500 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46874 * 300.00016 * 8 6 4 12 12 N 1.33101 * 106.86880 * 180.23354 * 3 2 1 13 13 N 1.28513 * 109.74500 * 359.77352 * 12 3 2 14 14 C 1.32389 * 110.20719 * 0.02562 * 13 12 3 15 15 S 1.76197 * 126.26244 * 179.97438 * 14 13 12 16 16 C 1.81002 * 99.99784 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.46940 * 180.02562 * 16 15 14 18 18 C 1.38225 * 120.00312 * 269.72827 * 17 16 15 19 19 C 1.38200 * 120.03719 * 179.72295 * 18 17 16 20 20 C 1.38383 * 120.04114 * 0.55595 * 19 18 17 21 21 Cl 1.73592 * 120.00457 * 179.74672 * 20 19 18 22 22 C 1.38297 * 119.99697 * 359.71694 * 20 19 18 23 23 C 1.38448 * 119.99330 * 90.00106 * 17 16 15 24 24 F 1.35099 * 120.02328 * 0.02658 * 23 17 16 25 25 H 1.09004 * 109.46549 * 270.16656 * 1 2 3 26 26 H 1.08996 * 109.47186 * 30.16736 * 1 2 3 27 27 H 1.09002 * 109.46980 * 150.17112 * 1 2 3 28 28 H 0.97000 * 119.99470 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46731 * 60.00970 * 16 15 14 30 30 H 1.09000 * 109.47285 * 300.00178 * 16 15 14 31 31 H 1.08002 * 119.97806 * 359.97438 * 18 17 16 32 32 H 1.08007 * 119.97987 * 180.24883 * 19 18 17 33 33 H 1.08000 * 120.01884 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4444 0.0006 5 1 0.8595 2.7005 0.0055 6 6 2.8768 3.4569 -0.0050 7 7 4.1476 3.1467 -0.0104 8 14 2.3529 5.2500 -0.0049 9 1 1.5477 5.5304 1.2108 10 1 3.5580 6.1177 -0.0108 11 1 1.5367 5.5273 -1.2141 12 7 3.5490 0.6414 -0.0052 13 7 3.5370 -0.6437 -0.0035 14 6 2.2904 -1.0893 0.0022 15 16 1.7874 -2.7779 0.0058 16 6 3.4060 -3.5881 0.0003 17 6 3.2192 -5.0835 0.0018 18 6 3.1436 -5.7694 1.1995 19 6 2.9666 -7.1400 1.2017 20 6 2.8764 -7.8289 0.0050 21 17 2.6607 -9.5513 0.0089 22 6 2.9575 -7.1449 -1.1943 23 6 3.1290 -5.7709 -1.1966 24 9 3.2089 -5.1017 -2.3674 25 1 -0.3632 0.0030 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 4.8179 3.8478 -0.0140 29 1 3.9642 -3.2904 0.8879 30 1 3.9574 -3.2920 -0.8921 31 1 3.2188 -5.2333 2.1340 32 1 2.9036 -7.6745 2.1382 33 1 2.8867 -7.6821 -2.1285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279821741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:17 Heat of formation + Delta-G solvation = 37.314786 kcal Electronic energy + Delta-G solvation = -21564.227472 eV Core-core repulsion = 17885.497459 eV Total energy + Delta-G solvation = -3678.730013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.05958 -40.53684 -39.46349 -36.87036 -33.73107 -33.39880 -32.85582 -30.98405 -29.37679 -27.25354 -26.45170 -25.48353 -23.27446 -22.05623 -20.86308 -20.43473 -18.01717 -17.39735 -16.94667 -16.51220 -16.03485 -15.75894 -15.43281 -14.80511 -14.75771 -14.54671 -14.00869 -13.86329 -13.57911 -13.42000 -13.24944 -13.09071 -12.34391 -12.27035 -11.99862 -11.65006 -11.59640 -11.35664 -11.31410 -11.30447 -10.95958 -10.50547 -10.39328 -9.76520 -9.63898 -9.26143 -8.81926 -8.73827 -8.46992 -8.40999 -6.89609 -6.67379 -4.60598 0.53213 0.80939 1.68673 2.03976 2.69764 2.90858 3.04620 3.06864 3.24633 3.33020 3.85087 3.99479 4.20718 4.36226 4.37776 4.39348 4.61518 4.86733 5.18203 5.29593 5.31478 5.52443 5.58709 5.68004 5.79557 5.86120 5.90946 6.01564 6.01871 6.42010 6.73028 6.85819 7.21402 7.45394 7.85347 8.14564 8.67292 8.82627 10.25073 10.60053 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.002411 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.907350 B =11612.527462 C =11743.724570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.515 5.515 3 C 0.347 3.653 4 C -0.446 4.446 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.333 5.333 13 N -0.285 5.285 14 C 0.043 3.957 15 S -0.041 6.041 16 C -0.057 4.057 17 C -0.097 4.097 18 C -0.061 4.061 19 C -0.120 4.120 20 C -0.008 4.008 21 Cl -0.061 7.061 22 C -0.149 4.149 23 C 0.131 3.869 24 F -0.122 7.122 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.280 0.720 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -17.991 1.249 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.103 3.897 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.189 1.189 12 N -0.180 5.180 13 N -0.131 5.131 14 C -0.329 4.329 15 S 0.188 5.812 16 C -0.205 4.205 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.036 4.036 21 Cl -0.032 7.032 22 C -0.168 4.168 23 C 0.109 3.891 24 F -0.100 7.100 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.969 -18.505 1.190 18.963 hybrid contribution -0.524 1.481 -0.280 1.596 sum -4.493 -17.024 0.909 17.630 Atomic orbital electron populations 1.21498 0.78507 1.02718 1.01636 1.46023 1.06079 1.05261 1.64363 1.21621 0.84745 0.88412 0.94932 1.18072 0.94694 0.86439 1.49452 0.89803 1.25804 0.94341 1.01329 0.93295 1.70000 1.00722 1.35160 1.30125 0.86169 0.78986 0.80582 0.79760 1.18946 1.20051 1.18945 1.75461 1.15272 0.97770 1.29525 1.74526 1.15124 1.07686 1.15744 1.25283 0.91616 0.92514 1.23481 1.84564 1.09065 0.91781 1.95743 1.22144 0.98902 0.90852 1.08640 1.19628 1.02798 0.95101 0.92432 1.20992 0.96175 0.93146 0.97744 1.21095 1.01505 0.94135 0.97192 1.20606 1.03381 0.85273 0.94327 1.98385 1.95449 1.10480 1.98923 1.20931 1.04652 0.92454 0.98803 1.17299 1.01031 0.89345 0.81397 1.91570 1.93122 1.80192 1.45111 0.92525 0.90322 0.91563 0.90875 0.87311 0.87630 0.83406 0.84008 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.87 59.85 0.65 2.50 16 2 N -0.51 -12.42 3.26 -123.17 -0.40 -12.82 16 3 C 0.35 9.68 7.53 -154.81 -1.17 8.52 16 4 C -0.45 -11.76 9.04 -38.32 -0.35 -12.11 16 5 H 0.08 1.99 7.31 -52.49 -0.38 1.61 16 6 C 0.08 1.98 5.50 -17.29 -0.10 1.89 16 7 N -0.74 -20.16 11.94 55.56 0.66 -19.50 16 8 Si 0.92 18.40 29.56 -169.99 -5.03 13.38 16 9 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 10 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 12 N -0.33 -9.98 10.48 31.26 0.33 -9.65 16 13 N -0.28 -7.76 11.62 30.89 0.36 -7.40 16 14 C 0.04 1.02 8.09 -87.28 -0.71 0.31 16 15 S -0.04 -0.73 21.77 -107.50 -2.34 -3.07 16 16 C -0.06 -0.90 5.18 36.01 0.19 -0.71 16 17 C -0.10 -1.21 5.14 -104.55 -0.54 -1.75 16 18 C -0.06 -0.61 9.70 -39.60 -0.38 -0.99 16 19 C -0.12 -1.06 9.83 -39.54 -0.39 -1.44 16 20 C -0.01 -0.08 6.32 -39.51 -0.25 -0.33 16 21 Cl -0.06 -0.52 28.96 -51.86 -1.50 -2.02 16 22 C -0.15 -1.52 9.81 -39.48 -0.39 -1.91 16 23 C 0.13 1.62 7.24 -39.42 -0.29 1.34 16 24 F -0.12 -1.73 16.48 2.25 0.04 -1.69 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 27 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 28 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 29 H 0.11 1.70 8.08 -51.92 -0.42 1.28 16 30 H 0.11 1.83 7.64 -51.92 -0.40 1.43 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -32.37 328.64 -9.46 -41.83 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.82 Total: 0.69 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.71 Total: -4.69 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.95 Total: -49.37 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.34 Total: -3.07 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.37 -9.46 -41.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.149 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds