Wall clock time and date at job start Tue Mar 31 2020 14:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38352 * 127.14907 * 2 1 4 4 C 1.39771 * 126.56951 * 0.03255 * 3 2 1 5 5 H 1.08000 * 120.00035 * 0.26039 * 4 3 2 6 6 C 1.40080 * 120.00217 * 180.26344 * 4 3 2 7 7 N 1.30817 * 119.99940 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47264 * 59.99754 * 8 6 4 10 10 H 1.48500 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46874 * 300.00016 * 8 6 4 12 12 N 1.33101 * 106.86880 * 180.23354 * 3 2 1 13 13 N 1.28513 * 109.74500 * 359.77352 * 12 3 2 14 14 C 1.32389 * 110.20719 * 0.02562 * 13 12 3 15 15 S 1.76197 * 126.26244 * 179.97438 * 14 13 12 16 16 C 1.81002 * 99.99784 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.46940 * 180.02562 * 16 15 14 18 18 C 1.38225 * 120.00312 * 269.72827 * 17 16 15 19 19 C 1.38200 * 120.03719 * 179.72295 * 18 17 16 20 20 C 1.38383 * 120.04114 * 0.55595 * 19 18 17 21 21 Cl 1.73592 * 120.00457 * 179.74672 * 20 19 18 22 22 C 1.38297 * 119.99697 * 359.71694 * 20 19 18 23 23 C 1.38448 * 119.99330 * 90.00106 * 17 16 15 24 24 F 1.35099 * 120.02328 * 0.02658 * 23 17 16 25 25 H 1.09004 * 109.46549 * 270.16656 * 1 2 3 26 26 H 1.08996 * 109.47186 * 30.16736 * 1 2 3 27 27 H 1.09002 * 109.46980 * 150.17112 * 1 2 3 28 28 H 0.97000 * 119.99470 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46731 * 60.00970 * 16 15 14 30 30 H 1.09000 * 109.47285 * 300.00178 * 16 15 14 31 31 H 1.08002 * 119.97806 * 359.97438 * 18 17 16 32 32 H 1.08007 * 119.97987 * 180.24883 * 19 18 17 33 33 H 1.08000 * 120.01884 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4444 0.0006 5 1 0.8595 2.7005 0.0055 6 6 2.8768 3.4569 -0.0050 7 7 4.1476 3.1467 -0.0104 8 14 2.3529 5.2500 -0.0049 9 1 1.5477 5.5304 1.2108 10 1 3.5580 6.1177 -0.0108 11 1 1.5367 5.5273 -1.2141 12 7 3.5490 0.6414 -0.0052 13 7 3.5370 -0.6437 -0.0035 14 6 2.2904 -1.0893 0.0022 15 16 1.7874 -2.7779 0.0058 16 6 3.4060 -3.5881 0.0003 17 6 3.2192 -5.0835 0.0018 18 6 3.1436 -5.7694 1.1995 19 6 2.9666 -7.1400 1.2017 20 6 2.8764 -7.8289 0.0050 21 17 2.6607 -9.5513 0.0089 22 6 2.9575 -7.1449 -1.1943 23 6 3.1290 -5.7709 -1.1966 24 9 3.2089 -5.1017 -2.3674 25 1 -0.3632 0.0030 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 4.8179 3.8478 -0.0140 29 1 3.9642 -3.2904 0.8879 30 1 3.9574 -3.2920 -0.8921 31 1 3.2188 -5.2333 2.1340 32 1 2.9036 -7.6745 2.1382 33 1 2.8867 -7.6821 -2.1285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279821741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:16 Heat of formation + Delta-G solvation = 20.014360 kcal Electronic energy + Delta-G solvation = -21564.977675 eV Core-core repulsion = 17885.497459 eV Total energy + Delta-G solvation = -3679.480216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.07675 -42.46943 -40.30635 -37.61040 -35.63722 -35.18593 -33.87654 -31.80392 -31.33185 -28.56253 -27.98487 -27.30491 -24.11084 -23.10498 -22.78290 -22.18861 -19.28641 -18.90928 -17.98309 -17.87336 -17.30164 -17.01253 -16.72374 -16.57071 -16.19234 -15.72479 -15.42109 -15.01098 -14.82644 -14.50929 -14.29428 -14.22281 -13.92605 -13.81625 -13.22932 -12.96009 -12.88724 -12.77496 -12.53673 -12.42242 -12.04498 -12.02704 -11.88138 -11.70769 -11.43363 -10.59693 -10.40659 -10.30131 -10.07578 -9.70114 -8.58165 -8.55074 -6.59890 -0.41995 -0.00275 0.57713 0.93748 1.18404 1.20093 1.41554 1.57030 1.61613 2.17991 2.36901 2.43537 2.50490 3.10372 3.31738 3.33145 3.51560 3.83404 3.98580 4.06261 4.23274 4.39874 4.44122 4.60012 4.60872 4.74465 4.86772 4.89886 4.94457 5.02045 5.14339 5.30949 5.54905 5.56810 6.01734 6.20721 6.74733 6.90842 8.40292 8.62487 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.002411 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.907350 B =11612.527462 C =11743.724570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.317 3.683 4 C -0.471 4.471 5 H 0.104 0.896 6 C 0.028 3.972 7 N -0.788 5.788 8 Si 1.007 2.993 9 H -0.253 1.253 10 H -0.272 1.272 11 H -0.254 1.254 12 N -0.388 5.388 13 N -0.330 5.330 14 C 0.052 3.948 15 S 0.003 5.997 16 C -0.051 4.051 17 C -0.113 4.113 18 C -0.055 4.055 19 C -0.108 4.108 20 C -0.006 4.006 21 Cl -0.047 7.047 22 C -0.145 4.145 23 C 0.112 3.888 24 F -0.139 7.139 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.285 0.715 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -19.424 2.089 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.071 3.929 4 C -0.511 4.511 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.413 5.413 8 Si 0.826 3.174 9 H -0.177 1.177 10 H -0.197 1.197 11 H -0.178 1.178 12 N -0.235 5.235 13 N -0.174 5.174 14 C -0.321 4.321 15 S 0.232 5.768 16 C -0.199 4.199 17 C -0.116 4.116 18 C -0.075 4.075 19 C -0.126 4.126 20 C -0.034 4.034 21 Cl -0.018 7.018 22 C -0.165 4.165 23 C 0.090 3.910 24 F -0.118 7.118 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.031 -19.960 2.030 20.949 hybrid contribution 0.060 1.579 -0.524 1.664 sum -5.970 -18.381 1.506 19.385 Atomic orbital electron populations 1.21859 0.75260 1.04410 1.03437 1.46373 1.08102 1.04377 1.63462 1.22055 0.85111 0.89940 0.95831 1.18599 0.96014 0.86429 1.50027 0.87819 1.27008 0.93906 1.06543 0.91815 1.70154 1.02405 1.37111 1.31641 0.84897 0.78685 0.73451 0.80396 1.17652 1.19666 1.17771 1.75316 1.17350 0.99112 1.31722 1.74401 1.17169 1.07155 1.18686 1.26399 0.91122 0.95466 1.19134 1.84350 1.10413 0.87023 1.94970 1.22105 0.97345 0.93111 1.07386 1.19471 1.05353 0.93013 0.93738 1.21199 0.95177 0.93830 0.97325 1.21406 0.99519 0.93504 0.98203 1.20759 1.02292 0.86049 0.94266 1.98399 1.95262 1.09218 1.98892 1.21064 1.03895 0.91503 1.00009 1.17524 1.02417 0.90255 0.80760 1.91525 1.93473 1.80709 1.46068 0.90563 0.89276 0.89274 0.90501 0.87606 0.89940 0.81718 0.81024 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.25 10.87 127.77 1.39 4.64 16 2 N -0.52 -25.37 3.26 -543.61 -1.77 -27.14 16 3 C 0.32 18.25 7.53 133.23 1.00 19.25 16 4 C -0.47 -25.22 9.04 23.09 0.21 -25.01 16 5 H 0.10 4.89 7.31 -2.91 -0.02 4.87 16 6 C 0.03 1.45 5.50 85.29 0.47 1.92 16 7 N -0.79 -44.92 11.94 21.85 0.26 -44.66 16 8 Si 1.01 37.70 29.56 68.60 2.03 39.73 16 9 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 10 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 11 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 12 N -0.39 -24.49 10.48 -55.02 -0.58 -25.06 16 13 N -0.33 -18.80 11.62 -56.18 -0.65 -19.46 16 14 C 0.05 2.55 8.09 179.18 1.45 4.00 16 15 S 0.00 0.12 21.77 -56.49 -1.23 -1.11 16 16 C -0.05 -1.62 5.18 71.24 0.37 -1.25 16 17 C -0.11 -2.73 5.14 -19.82 -0.10 -2.83 16 18 C -0.06 -0.98 9.70 22.26 0.22 -0.76 16 19 C -0.11 -1.52 9.83 22.30 0.22 -1.31 16 20 C -0.01 -0.09 6.32 22.32 0.14 0.05 16 21 Cl -0.05 -0.65 28.96 -2.72 -0.08 -0.73 16 22 C -0.15 -2.70 9.81 22.34 0.22 -2.49 16 23 C 0.11 2.70 7.24 22.37 0.16 2.86 16 24 F -0.14 -4.02 16.48 44.97 0.74 -3.28 16 25 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.09 2.92 7.54 -2.39 -0.02 2.90 16 27 H 0.09 2.68 7.85 -2.39 -0.02 2.66 16 28 H 0.28 14.67 8.30 -92.71 -0.77 13.90 16 29 H 0.11 3.39 8.08 -2.40 -0.02 3.37 16 30 H 0.08 3.00 7.64 -2.40 -0.02 2.98 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.69 328.64 5.63 -69.06 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.17 Total: 13.58 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.74 Total: -0.93 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -2.74 Total: -116.32 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.74 Total: -3.28 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.23 Total: -1.11 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -74.69 5.63 -69.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.076 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds