Wall clock time and date at job start Tue Mar 31 2020 14:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38352 * 127.15194 * 2 1 4 4 C 1.39770 * 126.56894 * 0.02562 * 3 2 1 5 5 H 1.08003 * 119.99604 * 354.56593 * 4 3 2 6 6 C 1.40081 * 120.00249 * 174.57093 * 4 3 2 7 7 N 1.30815 * 119.99869 * 6.04730 * 6 4 3 8 8 Si 1.86806 * 119.99839 * 186.05135 * 6 4 3 9 9 H 1.48498 * 109.46884 * 94.98158 * 8 6 4 10 10 H 1.48500 * 109.46643 * 214.98055 * 8 6 4 11 11 H 1.48494 * 109.47105 * 334.97676 * 8 6 4 12 12 N 1.33096 * 106.86760 * 180.22467 * 3 2 1 13 13 N 1.28519 * 109.74950 * 359.77741 * 12 3 2 14 14 C 1.32385 * 110.20239 * 359.97438 * 13 12 3 15 15 S 1.76197 * 126.26065 * 179.97438 * 14 13 12 16 16 C 1.81000 * 100.00027 * 0.03127 * 15 14 13 17 17 C 1.50699 * 109.47331 * 179.97438 * 16 15 14 18 18 C 1.38246 * 119.98336 * 269.72568 * 17 16 15 19 19 C 1.38182 * 120.03807 * 179.72321 * 18 17 16 20 20 C 1.38490 * 119.99742 * 0.55017 * 19 18 17 21 21 F 1.35105 * 120.01606 * 179.74793 * 20 19 18 22 22 C 1.38410 * 119.96449 * 359.72183 * 20 19 18 23 23 C 1.38332 * 119.96245 * 0.02562 * 22 20 19 24 24 Cl 1.73602 * 120.00014 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.46874 * 270.17741 * 1 2 3 26 26 H 1.09001 * 109.46495 * 30.17809 * 1 2 3 27 27 H 1.08995 * 109.47042 * 150.17725 * 1 2 3 28 28 H 0.97001 * 119.99368 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47191 * 59.99851 * 16 15 14 30 30 H 1.08995 * 109.46917 * 299.99999 * 16 15 14 31 31 H 1.07998 * 119.97836 * 359.97438 * 18 17 16 32 32 H 1.07998 * 119.99770 * 180.27645 * 19 18 17 33 33 H 1.08007 * 120.01626 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8636 2.7017 -0.0876 6 6 2.8717 3.4552 0.1152 7 7 4.1440 3.1511 0.1027 8 14 2.3390 5.2376 0.2861 9 1 2.2949 5.6053 1.7241 10 1 3.3086 6.1137 -0.4194 11 1 0.9904 5.4105 -0.3108 12 7 3.5490 0.6413 -0.0050 13 7 3.5370 -0.6438 -0.0033 14 6 2.2904 -1.0894 0.0034 15 16 1.7873 -2.7780 0.0074 16 6 3.4058 -3.5882 0.0008 17 6 3.2190 -5.0836 0.0038 18 6 3.1448 -5.7682 1.2026 19 6 2.9678 -7.1386 1.2067 20 6 2.8761 -7.8285 0.0094 21 9 2.7082 -9.1691 0.0130 22 6 2.9561 -7.1439 -1.1908 23 6 3.1280 -5.7713 -1.1931 24 17 3.2291 -4.9117 -2.6980 25 1 -0.3633 0.0032 1.0277 26 1 -0.3632 0.8884 -0.5166 27 1 -0.3633 -0.8915 -0.5111 28 1 4.8107 3.8511 0.1826 29 1 3.9648 -3.2905 0.8880 30 1 3.9566 -3.2923 -0.8919 31 1 3.2211 -5.2310 2.1364 32 1 2.9054 -7.6722 2.1436 33 1 2.8843 -7.6810 -2.1251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279944712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:02 Heat of formation + Delta-G solvation = 37.793677 kcal Electronic energy + Delta-G solvation = -21580.125564 eV Core-core repulsion = 17901.416317 eV Total energy + Delta-G solvation = -3678.709247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.21372 -40.52635 -39.53705 -36.58724 -33.72212 -33.37980 -32.71648 -31.23456 -29.36549 -27.06079 -26.41434 -25.45650 -23.42306 -22.02385 -20.84976 -20.42668 -18.09995 -17.39427 -16.98025 -16.49264 -15.96290 -15.57549 -15.46495 -14.85952 -14.76337 -14.63731 -14.12266 -14.06547 -13.99586 -13.33786 -12.92068 -12.69647 -12.29245 -12.26396 -12.13100 -11.57021 -11.54967 -11.37695 -11.33905 -11.00353 -10.94482 -10.48183 -10.36196 -9.76002 -9.62033 -9.25371 -8.79003 -8.72361 -8.45418 -8.39629 -6.87015 -6.67538 -4.59554 0.57849 0.77322 1.88528 2.06812 2.72426 2.89776 3.05065 3.08839 3.26048 3.33956 3.85640 3.92164 4.21374 4.36510 4.40226 4.45064 4.58720 4.85315 5.17667 5.29595 5.36380 5.53002 5.57534 5.60113 5.79922 5.86819 5.96764 6.02566 6.06399 6.41513 6.74464 6.87575 7.21981 7.46415 7.86478 8.15957 8.68116 8.83649 10.25200 10.61143 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.002720 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.301606 B =10292.561837 C =10443.402502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.347 3.653 4 C -0.448 4.448 5 H 0.084 0.916 6 C 0.079 3.921 7 N -0.736 5.736 8 Si 0.920 3.080 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.262 1.262 12 N -0.333 5.333 13 N -0.285 5.285 14 C 0.044 3.956 15 S -0.038 6.038 16 C -0.061 4.061 17 C -0.069 4.069 18 C -0.061 4.061 19 C -0.149 4.149 20 C 0.110 3.890 21 F -0.135 7.135 22 C -0.148 4.148 23 C 0.004 3.996 24 Cl -0.040 7.040 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.279 0.721 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -16.447 0.249 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.103 3.897 4 C -0.488 4.488 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.360 5.360 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.131 5.131 14 C -0.328 4.328 15 S 0.191 5.809 16 C -0.209 4.209 17 C -0.071 4.071 18 C -0.081 4.081 19 C -0.167 4.167 20 C 0.090 3.910 21 F -0.113 7.113 22 C -0.167 4.167 23 C -0.025 4.025 24 Cl -0.010 7.010 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.772 -16.806 0.100 17.224 hybrid contribution -0.537 1.321 -0.090 1.429 sum -4.309 -15.485 0.010 16.073 Atomic orbital electron populations 1.21494 0.78532 1.02666 1.01652 1.46041 1.06074 1.05295 1.64318 1.21615 0.84734 0.88420 0.94925 1.18109 0.95157 0.86484 1.49050 0.89766 1.25797 0.94323 1.01231 0.93347 1.70017 1.00818 1.34949 1.30184 0.86110 0.79506 0.80787 0.79167 1.19421 1.19971 1.18624 1.75458 1.15306 0.97830 1.29486 1.74530 1.15121 1.07635 1.15788 1.25312 0.91598 0.92569 1.23292 1.84557 1.08993 0.91629 1.95707 1.22274 0.98958 0.90955 1.08731 1.19383 1.01111 0.94819 0.91831 1.20966 0.96206 0.93014 0.97875 1.21226 1.03186 0.94894 0.97439 1.17463 1.02195 0.77383 0.93983 1.91524 1.92837 1.29598 1.97362 1.20927 1.04564 0.92848 0.98398 1.20561 1.02178 0.91720 0.88030 1.98421 1.96073 1.76454 1.30092 0.92500 0.90375 0.91578 0.90973 0.87535 0.87307 0.83426 0.83880 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.89 59.85 0.65 2.49 16 2 N -0.52 -12.33 3.26 -123.18 -0.40 -12.73 16 3 C 0.35 9.64 7.53 -154.81 -1.17 8.47 16 4 C -0.45 -11.78 9.05 -38.32 -0.35 -12.12 16 5 H 0.08 2.01 7.27 -52.48 -0.38 1.63 16 6 C 0.08 2.00 5.49 -17.29 -0.09 1.90 16 7 N -0.74 -20.08 11.96 55.56 0.66 -19.42 16 8 Si 0.92 18.38 29.57 -169.99 -5.03 13.36 16 9 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 12 N -0.33 -9.94 10.50 31.26 0.33 -9.61 16 13 N -0.28 -7.69 11.62 30.89 0.36 -7.33 16 14 C 0.04 1.04 8.09 -87.28 -0.71 0.33 16 15 S -0.04 -0.67 21.77 -107.50 -2.34 -3.01 16 16 C -0.06 -0.94 4.95 36.01 0.18 -0.76 16 17 C -0.07 -0.85 5.14 -104.58 -0.54 -1.39 16 18 C -0.06 -0.61 9.70 -39.60 -0.38 -1.00 16 19 C -0.15 -1.34 10.03 -39.51 -0.40 -1.74 16 20 C 0.11 1.10 7.30 -39.43 -0.29 0.81 16 21 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 22 C -0.15 -1.52 9.81 -39.48 -0.39 -1.91 16 23 C 0.00 0.05 6.31 -39.51 -0.25 -0.20 16 24 Cl -0.04 -0.51 27.29 -51.86 -1.42 -1.93 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.33 7.49 -51.93 -0.39 0.94 16 27 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 28 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 29 H 0.11 1.67 8.08 -51.92 -0.42 1.25 16 30 H 0.11 1.84 6.90 -51.92 -0.36 1.49 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -32.19 327.03 -9.37 -41.55 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -2.78 Total: 0.65 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.72 Total: -5.12 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.95 Total: -49.09 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.34 Total: -3.01 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.19 -9.37 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279944712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.349 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds