Wall clock time and date at job start Tue Mar 31 2020 14:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38352 * 127.15194 * 2 1 4 4 C 1.39770 * 126.56894 * 0.02562 * 3 2 1 5 5 H 1.08003 * 119.99604 * 354.56593 * 4 3 2 6 6 C 1.40081 * 120.00249 * 174.57093 * 4 3 2 7 7 N 1.30815 * 119.99869 * 6.04730 * 6 4 3 8 8 Si 1.86806 * 119.99839 * 186.05135 * 6 4 3 9 9 H 1.48498 * 109.46884 * 94.98158 * 8 6 4 10 10 H 1.48500 * 109.46643 * 214.98055 * 8 6 4 11 11 H 1.48494 * 109.47105 * 334.97676 * 8 6 4 12 12 N 1.33096 * 106.86760 * 180.22467 * 3 2 1 13 13 N 1.28519 * 109.74950 * 359.77741 * 12 3 2 14 14 C 1.32385 * 110.20239 * 359.97438 * 13 12 3 15 15 S 1.76197 * 126.26065 * 179.97438 * 14 13 12 16 16 C 1.81000 * 100.00027 * 0.03127 * 15 14 13 17 17 C 1.50699 * 109.47331 * 179.97438 * 16 15 14 18 18 C 1.38246 * 119.98336 * 269.72568 * 17 16 15 19 19 C 1.38182 * 120.03807 * 179.72321 * 18 17 16 20 20 C 1.38490 * 119.99742 * 0.55017 * 19 18 17 21 21 F 1.35105 * 120.01606 * 179.74793 * 20 19 18 22 22 C 1.38410 * 119.96449 * 359.72183 * 20 19 18 23 23 C 1.38332 * 119.96245 * 0.02562 * 22 20 19 24 24 Cl 1.73602 * 120.00014 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.46874 * 270.17741 * 1 2 3 26 26 H 1.09001 * 109.46495 * 30.17809 * 1 2 3 27 27 H 1.08995 * 109.47042 * 150.17725 * 1 2 3 28 28 H 0.97001 * 119.99368 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47191 * 59.99851 * 16 15 14 30 30 H 1.08995 * 109.46917 * 299.99999 * 16 15 14 31 31 H 1.07998 * 119.97836 * 359.97438 * 18 17 16 32 32 H 1.07998 * 119.99770 * 180.27645 * 19 18 17 33 33 H 1.08007 * 120.01626 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8636 2.7017 -0.0876 6 6 2.8717 3.4552 0.1152 7 7 4.1440 3.1511 0.1027 8 14 2.3390 5.2376 0.2861 9 1 2.2949 5.6053 1.7241 10 1 3.3086 6.1137 -0.4194 11 1 0.9904 5.4105 -0.3108 12 7 3.5490 0.6413 -0.0050 13 7 3.5370 -0.6438 -0.0033 14 6 2.2904 -1.0894 0.0034 15 16 1.7873 -2.7780 0.0074 16 6 3.4058 -3.5882 0.0008 17 6 3.2190 -5.0836 0.0038 18 6 3.1448 -5.7682 1.2026 19 6 2.9678 -7.1386 1.2067 20 6 2.8761 -7.8285 0.0094 21 9 2.7082 -9.1691 0.0130 22 6 2.9561 -7.1439 -1.1908 23 6 3.1280 -5.7713 -1.1931 24 17 3.2291 -4.9117 -2.6980 25 1 -0.3633 0.0032 1.0277 26 1 -0.3632 0.8884 -0.5166 27 1 -0.3633 -0.8915 -0.5111 28 1 4.8107 3.8511 0.1826 29 1 3.9648 -3.2905 0.8880 30 1 3.9566 -3.2923 -0.8919 31 1 3.2211 -5.2310 2.1364 32 1 2.9054 -7.6722 2.1436 33 1 2.8843 -7.6810 -2.1251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279944712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:01 Heat of formation + Delta-G solvation = 20.739370 kcal Electronic energy + Delta-G solvation = -21580.865094 eV Core-core repulsion = 17901.416317 eV Total energy + Delta-G solvation = -3679.448777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.01576 -42.44189 -40.41253 -37.54078 -35.61905 -35.16079 -33.74344 -32.05642 -31.30835 -28.45604 -27.86502 -27.24051 -24.24755 -23.05959 -22.75298 -22.16705 -19.26333 -18.92560 -17.99260 -17.85781 -17.26485 -16.79393 -16.54739 -16.52256 -16.23048 -15.75684 -15.56933 -15.05930 -15.00656 -14.81451 -14.04863 -13.98981 -13.80235 -13.70677 -13.27974 -13.04178 -12.96639 -12.73666 -12.46600 -12.35451 -12.05397 -11.99175 -11.85353 -11.67428 -11.43094 -10.56818 -10.37762 -10.27010 -10.08245 -9.68660 -8.55034 -8.52463 -6.57589 -0.38054 -0.03761 0.62082 0.96116 1.20233 1.24565 1.42121 1.59033 1.62020 2.18781 2.37500 2.45469 2.52856 3.08164 3.33927 3.41874 3.53390 3.83439 3.98318 4.08019 4.26508 4.32721 4.45589 4.62059 4.67105 4.78718 4.82948 4.90316 4.97110 5.00235 5.17695 5.32780 5.57349 5.61597 6.04616 6.22852 6.76454 6.93153 8.41410 8.65318 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.002720 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.301606 B =10292.561837 C =10443.402502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.318 3.682 4 C -0.472 4.472 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.788 5.788 8 Si 1.006 2.994 9 H -0.263 1.263 10 H -0.271 1.271 11 H -0.247 1.247 12 N -0.389 5.389 13 N -0.329 5.329 14 C 0.055 3.945 15 S 0.007 5.993 16 C -0.056 4.056 17 C -0.084 4.084 18 C -0.056 4.056 19 C -0.135 4.135 20 C 0.113 3.887 21 F -0.133 7.133 22 C -0.146 4.146 23 C -0.004 4.004 24 Cl -0.056 7.056 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.284 0.716 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -17.708 1.103 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.223 5.223 3 C 0.072 3.928 4 C -0.513 4.513 5 H 0.121 0.879 6 C -0.192 4.192 7 N -0.413 5.413 8 Si 0.825 3.175 9 H -0.188 1.188 10 H -0.196 1.196 11 H -0.170 1.170 12 N -0.235 5.235 13 N -0.173 5.173 14 C -0.319 4.319 15 S 0.236 5.764 16 C -0.204 4.204 17 C -0.087 4.087 18 C -0.076 4.076 19 C -0.154 4.154 20 C 0.092 3.908 21 F -0.112 7.112 22 C -0.165 4.165 23 C -0.033 4.033 24 Cl -0.027 7.027 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.183 0.817 32 H 0.191 0.809 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.781 -18.086 0.949 19.011 hybrid contribution 0.035 1.386 -0.339 1.427 sum -5.746 -16.700 0.610 17.672 Atomic orbital electron populations 1.21848 0.75334 1.04344 1.03411 1.46389 1.08078 1.04451 1.63423 1.22023 0.85103 0.89907 0.95812 1.18613 0.96373 0.86539 1.49734 0.87943 1.26978 0.93920 1.06296 0.91957 1.70163 1.02493 1.36900 1.31701 0.84849 0.79558 0.73797 0.79310 1.18764 1.19562 1.16991 1.75314 1.17355 0.99223 1.31653 1.74405 1.17138 1.07048 1.18725 1.26432 0.91075 0.95509 1.18871 1.84353 1.10290 0.86829 1.94918 1.22247 0.97440 0.93072 1.07624 1.19229 1.03554 0.92843 0.93117 1.21164 0.95258 0.93607 0.97560 1.21510 1.01213 0.94299 0.98371 1.17578 1.01597 0.77427 0.94184 1.91537 1.92744 1.29533 1.97359 1.21055 1.03872 0.92122 0.99491 1.20609 1.03184 0.92320 0.87210 1.98416 1.96241 1.76921 1.31138 0.90599 0.89402 0.89244 0.90554 0.88010 0.89186 0.81729 0.80851 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.24 10.89 127.77 1.39 4.63 16 2 N -0.52 -25.11 3.26 -543.62 -1.77 -26.88 16 3 C 0.32 18.17 7.53 133.23 1.00 19.17 16 4 C -0.47 -25.25 9.05 23.09 0.21 -25.04 16 5 H 0.10 4.85 7.27 -2.91 -0.02 4.83 16 6 C 0.03 1.51 5.49 85.29 0.47 1.98 16 7 N -0.79 -44.68 11.96 21.85 0.26 -44.41 16 8 Si 1.01 37.69 29.57 68.60 2.03 39.72 16 9 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 10 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 11 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 12 N -0.39 -24.30 10.50 -55.02 -0.58 -24.88 16 13 N -0.33 -18.48 11.62 -56.17 -0.65 -19.14 16 14 C 0.05 2.62 8.09 179.18 1.45 4.07 16 15 S 0.01 0.24 21.77 -56.49 -1.23 -0.99 16 16 C -0.06 -1.71 4.95 71.24 0.35 -1.35 16 17 C -0.08 -1.98 5.14 -19.84 -0.10 -2.08 16 18 C -0.06 -0.98 9.70 22.26 0.22 -0.77 16 19 C -0.14 -1.96 10.03 22.32 0.22 -1.74 16 20 C 0.11 1.91 7.30 22.37 0.16 2.07 16 21 F -0.13 -2.31 17.27 44.97 0.78 -1.53 16 22 C -0.15 -2.70 9.81 22.33 0.22 -2.48 16 23 C 0.00 -0.10 6.31 22.32 0.14 0.04 16 24 Cl -0.06 -1.45 27.29 -2.72 -0.07 -1.52 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.09 2.86 7.49 -2.39 -0.02 2.84 16 27 H 0.09 2.65 7.85 -2.39 -0.02 2.63 16 28 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 29 H 0.10 3.21 8.08 -2.40 -0.02 3.19 16 30 H 0.09 3.14 6.90 -2.40 -0.02 3.12 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -73.68 327.03 5.66 -68.01 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.17 Total: 13.12 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.73 Total: -1.50 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -2.74 Total: -115.31 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.23 Total: -0.99 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -73.68 5.66 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279944712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.752 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds