Wall clock time and date at job start Tue Mar 31 2020 14:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15074 * 2 1 4 4 C 1.39771 * 126.56590 * 0.02562 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.74176 * 3 2 1 13 13 N 1.28514 * 109.74899 * 0.26251 * 12 3 2 14 14 C 1.32387 * 110.20378 * 0.02562 * 13 12 3 15 15 S 1.76196 * 126.26075 * 179.97438 * 14 13 12 16 16 C 1.81001 * 100.00091 * 0.02562 * 15 14 13 17 17 C 1.50700 * 109.47428 * 180.02562 * 16 15 14 18 18 C 1.38209 * 119.99093 * 269.72198 * 17 16 15 19 19 C 1.38439 * 119.98767 * 179.78586 * 18 17 16 20 20 F 1.35099 * 120.01476 * 180.21442 * 19 18 17 21 21 C 1.38486 * 119.97248 * 0.49019 * 19 18 17 22 22 C 1.38162 * 119.98664 * 359.74534 * 21 19 18 23 23 C 1.38332 * 119.99400 * 89.99758 * 17 16 15 24 24 Cl 1.73595 * 119.98911 * 0.02562 * 23 17 16 25 25 H 1.09002 * 109.47190 * 89.99644 * 1 2 3 26 26 H 1.09008 * 109.47074 * 209.99766 * 1 2 3 27 27 H 1.08997 * 109.46970 * 329.99436 * 1 2 3 28 28 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 29 29 H 1.09000 * 109.47093 * 300.00270 * 16 15 14 30 30 H 1.08999 * 109.47401 * 59.99677 * 16 15 14 31 31 H 1.08005 * 120.00618 * 0.02562 * 18 17 16 32 32 H 1.07995 * 120.00220 * 179.71677 * 21 19 18 33 33 H 1.08001 * 119.99300 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8680 2.7029 0.1297 6 6 2.8656 3.4537 -0.1664 7 7 2.5435 4.7028 0.0512 8 14 4.6015 3.0159 -0.6996 9 1 5.4391 2.7636 0.5004 10 1 4.5667 1.7952 -1.5446 11 1 5.1786 4.1407 -1.4786 12 7 3.5489 0.6414 0.0057 13 7 3.5370 -0.6437 0.0037 14 6 2.2904 -1.0894 -0.0041 15 16 1.7873 -2.7780 -0.0102 16 6 3.4059 -3.5882 -0.0021 17 6 3.2192 -5.0835 -0.0067 18 6 3.1320 -5.7725 1.1883 19 6 2.9561 -7.1457 1.1841 20 9 2.8665 -7.8191 2.3518 21 6 2.8777 -7.8294 -0.0177 22 6 2.9698 -7.1402 -1.2116 23 6 3.1408 -5.7670 -1.2068 24 17 3.2581 -4.9020 -2.7073 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6247 4.9385 0.2540 29 1 3.9660 -3.2896 -0.8882 30 1 3.9556 -3.2930 0.8916 31 1 3.1973 -5.2392 2.1252 32 1 2.7450 -8.9012 -0.0215 33 1 2.9082 -7.6733 -2.1488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279966055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:05 Heat of formation + Delta-G solvation = 27.438574 kcal Electronic energy + Delta-G solvation = -21754.388312 eV Core-core repulsion = 18075.230034 eV Total energy + Delta-G solvation = -3679.158278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22720 -40.94837 -39.61885 -36.60044 -33.96846 -33.64463 -33.19003 -30.69337 -30.04735 -27.57506 -26.71673 -25.29635 -23.23668 -22.18021 -21.41580 -20.21332 -18.22364 -17.79113 -17.04909 -16.87749 -16.56170 -15.99108 -15.40779 -15.10922 -14.69878 -14.51432 -14.10056 -13.89166 -13.61681 -13.39107 -13.11313 -12.98320 -12.67067 -12.56481 -12.43053 -11.99321 -11.70920 -11.50396 -11.15779 -10.96420 -10.92246 -10.55458 -9.97975 -9.65268 -9.41730 -9.35134 -9.06214 -8.82853 -8.68848 -8.42513 -7.46107 -7.12382 -4.85324 0.48893 0.67641 1.85719 1.90287 2.49663 2.87924 3.15108 3.50974 3.58239 3.79300 3.87438 4.00207 4.08121 4.17554 4.31579 4.35799 4.63671 4.81658 5.07725 5.15379 5.17125 5.35330 5.39238 5.64237 5.65901 5.70523 5.79993 5.88556 5.90247 6.33167 6.36281 6.62923 7.10266 7.37841 7.50908 8.02446 8.33253 8.53641 9.93512 10.09049 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.003173 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.670657 B = 8821.908417 C = 9135.785698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.345 3.655 4 C -0.494 4.494 5 H 0.083 0.917 6 C 0.066 3.934 7 N -0.807 5.807 8 Si 1.104 2.896 9 H -0.277 1.277 10 H -0.255 1.255 11 H -0.310 1.310 12 N -0.410 5.410 13 N -0.270 5.270 14 C 0.061 3.939 15 S -0.025 6.025 16 C -0.066 4.066 17 C -0.032 4.032 18 C -0.125 4.125 19 C 0.104 3.896 20 F -0.134 7.134 21 C -0.141 4.141 22 C -0.081 4.081 23 C -0.035 4.035 24 Cl -0.045 7.045 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.284 0.716 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -21.945 -1.549 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.213 5.213 3 C 0.102 3.898 4 C -0.535 4.535 5 H 0.101 0.899 6 C -0.157 4.157 7 N -0.431 5.431 8 Si 0.932 3.068 9 H -0.203 1.203 10 H -0.180 1.180 11 H -0.240 1.240 12 N -0.260 5.260 13 N -0.114 5.114 14 C -0.312 4.312 15 S 0.205 5.795 16 C -0.214 4.214 17 C -0.034 4.034 18 C -0.146 4.146 19 C 0.085 3.915 20 F -0.113 7.113 21 C -0.161 4.161 22 C -0.100 4.100 23 C -0.064 4.064 24 Cl -0.016 7.016 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.739 -21.646 -1.880 21.740 hybrid contribution -2.144 0.106 0.557 2.218 sum -2.883 -21.540 -1.323 21.772 Atomic orbital electron populations 1.21541 0.77799 1.02902 1.02053 1.45848 1.06394 1.04886 1.64147 1.21661 0.85061 0.88992 0.94126 1.19370 0.97894 0.87273 1.48922 0.89908 1.27310 1.07373 0.91363 0.89635 1.70656 1.22427 1.19094 1.30883 0.82914 0.71162 0.73819 0.78929 1.20259 1.18018 1.24008 1.74217 1.16005 1.00807 1.34925 1.74259 1.15363 1.05724 1.16033 1.25389 0.90965 0.93133 1.21713 1.84719 1.08673 0.90662 1.95489 1.22347 0.99043 0.91061 1.08995 1.19055 0.98750 0.94459 0.91178 1.21056 1.01917 0.92411 0.99185 1.17653 1.02232 0.90070 0.81588 1.91529 1.93518 1.80125 1.46103 1.21108 1.03256 1.01212 0.90522 1.20888 0.98605 0.91680 0.98840 1.20904 1.04932 0.92719 0.87796 1.98414 1.96134 1.76485 1.30532 0.92097 0.91237 0.90262 0.90481 0.86910 0.87323 0.83286 0.83734 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.89 59.85 0.65 2.44 16 2 N -0.51 -11.75 3.26 -123.18 -0.40 -12.15 16 3 C 0.34 9.13 7.21 -154.82 -1.12 8.01 16 4 C -0.49 -13.18 9.47 -38.32 -0.36 -13.54 16 5 H 0.08 2.14 7.46 -52.48 -0.39 1.75 16 6 C 0.07 1.78 5.52 -17.29 -0.10 1.68 16 7 N -0.81 -21.61 13.65 55.56 0.76 -20.85 16 8 Si 1.10 27.53 26.40 -169.99 -4.49 23.04 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.26 -6.62 6.25 56.52 0.35 -6.26 16 11 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 12 N -0.41 -11.27 7.50 31.26 0.23 -11.03 16 13 N -0.27 -6.80 11.62 30.89 0.36 -6.44 16 14 C 0.06 1.37 8.09 -87.28 -0.71 0.66 16 15 S -0.02 -0.41 21.77 -107.50 -2.34 -2.75 16 16 C -0.07 -0.96 4.96 36.01 0.18 -0.78 16 17 C -0.03 -0.37 5.14 -104.60 -0.54 -0.91 16 18 C -0.12 -1.31 9.68 -39.52 -0.38 -1.70 16 19 C 0.10 1.01 7.30 -39.42 -0.29 0.72 16 20 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 21 C -0.14 -1.12 10.03 -39.52 -0.40 -1.52 16 22 C -0.08 -0.68 9.83 -39.56 -0.39 -1.07 16 23 C -0.03 -0.38 6.31 -39.49 -0.25 -0.62 16 24 Cl -0.04 -0.53 27.29 -51.86 -1.42 -1.95 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.05 7.85 -51.92 -0.41 0.65 16 27 H 0.08 1.35 7.47 -51.93 -0.39 0.96 16 28 H 0.28 7.22 8.73 -40.82 -0.36 6.86 16 29 H 0.11 1.76 6.90 -51.92 -0.36 1.41 16 30 H 0.11 1.59 8.08 -51.92 -0.42 1.17 16 31 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -30.95 322.45 -8.94 -39.90 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: -2.86 Total: -4.66 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.69 Total: -6.63 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.95 Total: -50.48 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 27.53 SS G_CDS: -4.49 Total: 23.04 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.34 Total: -2.75 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.95 -8.94 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279966055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.335 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds