Wall clock time and date at job start Tue Mar 31 2020 14:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15074 * 2 1 4 4 C 1.39771 * 126.56590 * 0.02562 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.74176 * 3 2 1 13 13 N 1.28514 * 109.74899 * 0.26251 * 12 3 2 14 14 C 1.32387 * 110.20378 * 0.02562 * 13 12 3 15 15 S 1.76196 * 126.26075 * 179.97438 * 14 13 12 16 16 C 1.81001 * 100.00091 * 0.02562 * 15 14 13 17 17 C 1.50700 * 109.47428 * 180.02562 * 16 15 14 18 18 C 1.38209 * 119.99093 * 269.72198 * 17 16 15 19 19 C 1.38439 * 119.98767 * 179.78586 * 18 17 16 20 20 F 1.35099 * 120.01476 * 180.21442 * 19 18 17 21 21 C 1.38486 * 119.97248 * 0.49019 * 19 18 17 22 22 C 1.38162 * 119.98664 * 359.74534 * 21 19 18 23 23 C 1.38332 * 119.99400 * 89.99758 * 17 16 15 24 24 Cl 1.73595 * 119.98911 * 0.02562 * 23 17 16 25 25 H 1.09002 * 109.47190 * 89.99644 * 1 2 3 26 26 H 1.09008 * 109.47074 * 209.99766 * 1 2 3 27 27 H 1.08997 * 109.46970 * 329.99436 * 1 2 3 28 28 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 29 29 H 1.09000 * 109.47093 * 300.00270 * 16 15 14 30 30 H 1.08999 * 109.47401 * 59.99677 * 16 15 14 31 31 H 1.08005 * 120.00618 * 0.02562 * 18 17 16 32 32 H 1.07995 * 120.00220 * 179.71677 * 21 19 18 33 33 H 1.08001 * 119.99300 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8680 2.7029 0.1297 6 6 2.8656 3.4537 -0.1664 7 7 2.5435 4.7028 0.0512 8 14 4.6015 3.0159 -0.6996 9 1 5.4391 2.7636 0.5004 10 1 4.5667 1.7952 -1.5446 11 1 5.1786 4.1407 -1.4786 12 7 3.5489 0.6414 0.0057 13 7 3.5370 -0.6437 0.0037 14 6 2.2904 -1.0894 -0.0041 15 16 1.7873 -2.7780 -0.0102 16 6 3.4059 -3.5882 -0.0021 17 6 3.2192 -5.0835 -0.0067 18 6 3.1320 -5.7725 1.1883 19 6 2.9561 -7.1457 1.1841 20 9 2.8665 -7.8191 2.3518 21 6 2.8777 -7.8294 -0.0177 22 6 2.9698 -7.1402 -1.2116 23 6 3.1408 -5.7670 -1.2068 24 17 3.2581 -4.9020 -2.7073 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6247 4.9385 0.2540 29 1 3.9660 -3.2896 -0.8882 30 1 3.9556 -3.2930 0.8916 31 1 3.1973 -5.2392 2.1252 32 1 2.7450 -8.9012 -0.0215 33 1 2.9082 -7.6733 -2.1488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279966055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:04 Heat of formation + Delta-G solvation = 11.648797 kcal Electronic energy + Delta-G solvation = -21755.073008 eV Core-core repulsion = 18075.230034 eV Total energy + Delta-G solvation = -3679.842974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.98983 -42.83438 -40.41442 -37.46087 -35.93146 -35.41386 -34.10908 -31.98850 -31.46034 -28.73014 -28.22037 -27.13094 -24.00214 -23.37441 -22.99309 -22.03046 -20.18561 -18.78873 -18.02257 -17.81819 -17.62125 -17.10972 -16.87214 -16.71755 -16.07890 -15.74922 -15.43041 -15.17592 -14.96414 -14.71546 -14.39464 -14.22027 -14.03299 -13.86385 -13.53868 -13.37687 -13.07753 -12.87150 -12.51712 -12.36411 -12.05697 -11.89068 -11.76859 -11.56603 -11.38703 -10.88211 -10.55188 -10.36946 -10.14535 -9.64045 -9.49266 -8.70607 -6.84486 -0.40643 -0.08532 0.49798 0.98920 1.05418 1.12508 1.50630 1.61839 1.95310 2.09111 2.20568 2.36575 2.39927 2.98844 3.04323 3.34586 3.52079 3.92572 3.95772 3.98414 4.17426 4.32628 4.33874 4.48071 4.55357 4.64069 4.70005 4.73887 4.93449 4.94466 5.07966 5.23974 5.37569 5.60635 5.69775 6.00798 6.40090 6.57996 7.92279 8.16492 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.003173 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.670657 B = 8821.908417 C = 9135.785698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.515 5.515 3 C 0.325 3.675 4 C -0.511 4.511 5 H 0.083 0.917 6 C 0.044 3.956 7 N -0.824 5.824 8 Si 1.137 2.863 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.295 1.295 12 N -0.441 5.441 13 N -0.309 5.309 14 C 0.077 3.923 15 S 0.019 5.981 16 C -0.062 4.062 17 C -0.048 4.048 18 C -0.128 4.128 19 C 0.097 3.903 20 F -0.137 7.137 21 C -0.122 4.122 22 C -0.073 4.073 23 C -0.042 4.042 24 Cl -0.059 7.059 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -25.220 -1.780 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.078 3.922 4 C -0.552 4.552 5 H 0.101 0.899 6 C -0.177 4.177 7 N -0.449 5.449 8 Si 0.964 3.036 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.224 1.224 12 N -0.289 5.289 13 N -0.152 5.152 14 C -0.298 4.298 15 S 0.248 5.752 16 C -0.210 4.210 17 C -0.051 4.051 18 C -0.149 4.149 19 C 0.078 3.922 20 F -0.116 7.116 21 C -0.142 4.142 22 C -0.091 4.091 23 C -0.071 4.071 24 Cl -0.030 7.030 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.195 0.805 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.742 -24.905 -2.110 25.055 hybrid contribution -1.914 0.747 0.652 2.156 sum -3.657 -24.158 -1.458 24.477 Atomic orbital electron populations 1.21903 0.74769 1.04558 1.03747 1.46218 1.08357 1.04202 1.62691 1.21729 0.85648 0.89812 0.95032 1.19365 0.97881 0.87646 1.50291 0.89928 1.27745 1.08620 0.91555 0.89731 1.70652 1.22730 1.19148 1.32388 0.82431 0.69954 0.73129 0.78082 1.21255 1.20088 1.22422 1.74093 1.17125 1.02122 1.35573 1.74194 1.17033 1.04973 1.18999 1.26515 0.90363 0.95865 1.17010 1.84600 1.10033 0.85968 1.94576 1.22344 0.97517 0.93013 1.08172 1.18806 1.01415 0.92642 0.92214 1.21093 1.01779 0.93116 0.98871 1.17773 1.02490 0.89782 0.82148 1.91529 1.93568 1.80036 1.46450 1.21478 1.00610 1.02733 0.89352 1.21206 0.97109 0.90525 1.00301 1.21074 1.05461 0.93728 0.86795 1.98414 1.96248 1.77015 1.31329 0.90324 0.88369 0.89864 0.90253 0.88209 0.87804 0.82987 0.80469 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.89 127.77 1.39 4.47 16 2 N -0.51 -23.30 3.26 -543.62 -1.77 -25.07 16 3 C 0.32 17.39 7.21 133.23 0.96 18.35 16 4 C -0.51 -27.70 9.47 23.09 0.22 -27.48 16 5 H 0.08 4.34 7.46 -2.91 -0.02 4.32 16 6 C 0.04 2.38 5.52 85.29 0.47 2.85 16 7 N -0.82 -44.63 13.65 21.86 0.30 -44.33 16 8 Si 1.14 57.38 26.40 68.60 1.81 59.19 16 9 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 10 H -0.27 -14.63 6.25 99.48 0.62 -14.01 16 11 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 12 N -0.44 -24.69 7.50 -55.02 -0.41 -25.11 16 13 N -0.31 -15.76 11.62 -56.18 -0.65 -16.41 16 14 C 0.08 3.39 8.09 179.18 1.45 4.84 16 15 S 0.02 0.60 21.77 -56.49 -1.23 -0.63 16 16 C -0.06 -1.75 4.96 71.24 0.35 -1.39 16 17 C -0.05 -1.04 5.14 -19.85 -0.10 -1.14 16 18 C -0.13 -2.42 9.68 22.31 0.22 -2.21 16 19 C 0.10 1.59 7.30 22.38 0.16 1.75 16 20 F -0.14 -2.43 17.27 44.97 0.78 -1.65 16 21 C -0.12 -1.43 10.03 22.31 0.22 -1.20 16 22 C -0.07 -0.94 9.83 22.29 0.22 -0.72 16 23 C -0.04 -0.80 6.31 22.33 0.14 -0.66 16 24 Cl -0.06 -1.31 27.29 -2.72 -0.07 -1.39 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.10 2.69 7.85 -2.38 -0.02 2.67 16 27 H 0.08 2.72 7.47 -2.39 -0.02 2.70 16 28 H 0.29 14.77 8.73 -92.71 -0.81 13.96 16 29 H 0.10 3.10 6.90 -2.39 -0.02 3.08 16 30 H 0.10 3.00 8.08 -2.40 -0.02 2.98 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -67.68 322.45 5.49 -62.19 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.04 Total: -4.26 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.70 Total: -2.54 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -2.54 Total: -110.92 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 57.38 SS G_CDS: 1.81 Total: 59.19 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -1.23 Total: -0.63 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.39 kcal Total: -67.68 5.49 -62.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279966055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.834 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds