Wall clock time and date at job start Tue Mar 31 2020 14:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.01988 * 89.99857 * 17 16 15 19 19 F 1.35107 * 120.02022 * 359.97438 * 18 17 16 20 20 C 1.38451 * 119.96242 * 180.02562 * 18 17 16 21 21 C 1.38220 * 120.00065 * 359.97438 * 20 18 17 22 22 C 1.38202 * 120.03831 * 359.97438 * 21 20 18 23 23 C 1.38292 * 120.02065 * 269.72666 * 17 16 15 24 24 Cl 1.73596 * 119.99725 * 359.97438 * 23 17 16 25 25 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 26 26 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 27 27 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 28 28 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 29 29 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 30 30 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 31 31 H 1.08007 * 119.99815 * 179.97438 * 20 18 17 32 32 H 1.08002 * 119.98196 * 180.02562 * 21 20 18 33 33 H 1.08006 * 119.97902 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 6 3.1393 -5.7702 -1.2011 19 9 3.2282 -5.1000 -2.3709 20 6 2.9672 -7.1440 -1.2013 21 6 2.8758 -7.8292 -0.0044 22 6 2.9566 -7.1439 1.1930 23 6 3.1331 -5.7714 1.1951 24 17 3.2409 -4.9123 2.6997 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.5753 4.9451 0.0298 29 1 3.9654 -3.2905 -0.8867 30 1 3.9562 -3.2921 0.8932 31 1 2.9044 -7.6802 -2.1368 32 1 2.7420 -8.9009 -0.0049 33 1 2.8854 -7.6804 2.1277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280000477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:08 Heat of formation + Delta-G solvation = 27.623787 kcal Electronic energy + Delta-G solvation = -22047.506597 eV Core-core repulsion = 18368.356351 eV Total energy + Delta-G solvation = -3679.150246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.12943 -40.93909 -39.53642 -36.66635 -33.95912 -33.63542 -33.17127 -30.75832 -30.04493 -27.48538 -26.69747 -25.27321 -23.17118 -22.20092 -21.41657 -20.18674 -18.21184 -18.03984 -17.07482 -16.86402 -16.12612 -15.88998 -15.27863 -15.06532 -15.02310 -14.40769 -13.97022 -13.87027 -13.60679 -13.37150 -13.16294 -13.06961 -12.64450 -12.58226 -12.11092 -11.96583 -11.67869 -11.61060 -11.16989 -11.06967 -10.86931 -10.55159 -9.91554 -9.58018 -9.40438 -9.10703 -9.08078 -9.01108 -8.68904 -8.40104 -7.43624 -7.11412 -4.85320 0.51355 0.67321 1.80768 1.90766 2.52438 2.89922 3.15534 3.56983 3.60075 3.86650 3.91126 4.04075 4.14559 4.19425 4.41233 4.41852 4.48203 4.81734 5.04646 5.10037 5.23288 5.37003 5.48731 5.65995 5.71944 5.77519 5.81424 5.82147 5.89907 6.34446 6.37450 6.63666 7.10814 7.38940 7.51731 8.03767 8.33942 8.54533 9.95356 10.10076 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.003406 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.270559 B = 8218.566160 C = 8353.723448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.346 3.654 4 C -0.492 4.492 5 H 0.083 0.917 6 C 0.065 3.935 7 N -0.807 5.807 8 Si 1.112 2.888 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.268 5.268 14 C 0.066 3.934 15 S -0.026 6.026 16 C -0.063 4.063 17 C -0.100 4.100 18 C 0.130 3.870 19 F -0.122 7.122 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.123 4.123 23 C 0.004 3.996 24 Cl -0.041 7.041 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.283 0.717 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -23.509 0.984 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.213 5.213 3 C 0.103 3.897 4 C -0.533 4.533 5 H 0.101 0.899 6 C -0.158 4.158 7 N -0.431 5.431 8 Si 0.940 3.060 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.112 5.112 14 C -0.308 4.308 15 S 0.204 5.796 16 C -0.211 4.211 17 C -0.104 4.104 18 C 0.109 3.891 19 F -0.100 7.100 20 C -0.171 4.171 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.025 4.025 24 Cl -0.011 7.011 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.882 -23.148 0.958 23.185 hybrid contribution -2.163 0.320 0.071 2.188 sum -3.045 -22.829 1.029 23.054 Atomic orbital electron populations 1.21543 0.77758 1.02956 1.02039 1.45825 1.06410 1.04839 1.64239 1.21716 0.85114 0.89047 0.93853 1.19399 0.97444 0.87220 1.49195 0.89875 1.27351 1.08472 0.91256 0.88702 1.70675 1.21561 1.18465 1.32415 0.82715 0.70605 0.72163 0.80506 1.24109 1.18554 1.20666 1.73991 1.15911 1.00897 1.35696 1.74260 1.15384 1.05612 1.15928 1.25390 0.90919 0.93121 1.21397 1.84669 1.08851 0.90673 1.95440 1.22212 0.99082 0.90776 1.09035 1.19263 1.04613 0.95171 0.91331 1.17342 1.00972 0.90023 0.80768 1.91571 1.93070 1.80506 1.44898 1.21250 1.03351 0.92057 1.00408 1.20977 0.97452 1.00459 0.90715 1.21116 1.01573 0.91714 0.99743 1.20629 1.02095 0.92557 0.87223 1.98420 1.96035 1.76931 1.29738 0.92120 0.91190 0.90222 0.90547 0.87353 0.86884 0.83857 0.83908 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.89 59.85 0.65 2.49 16 2 N -0.51 -12.09 3.26 -123.18 -0.40 -12.49 16 3 C 0.35 9.37 7.27 -154.81 -1.13 8.24 16 4 C -0.49 -13.36 9.50 -38.31 -0.36 -13.73 16 5 H 0.08 2.18 7.46 -52.49 -0.39 1.79 16 6 C 0.06 1.77 5.52 -17.29 -0.10 1.68 16 7 N -0.81 -21.88 13.65 55.56 0.76 -21.12 16 8 Si 1.11 28.41 25.90 -169.99 -4.40 24.01 16 9 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 10 H -0.26 -6.85 6.76 56.52 0.38 -6.47 16 11 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 12 N -0.41 -11.71 7.52 31.26 0.23 -11.48 16 13 N -0.27 -7.00 11.62 30.89 0.36 -6.65 16 14 C 0.07 1.52 8.09 -87.28 -0.71 0.81 16 15 S -0.03 -0.45 21.77 -107.50 -2.34 -2.79 16 16 C -0.06 -1.00 4.78 36.00 0.17 -0.83 16 17 C -0.10 -1.29 5.14 -104.52 -0.54 -1.83 16 18 C 0.13 1.53 7.24 -39.42 -0.29 1.24 16 19 F -0.12 -1.64 16.48 2.25 0.04 -1.60 16 20 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 21 C -0.08 -0.52 10.04 -39.60 -0.40 -0.92 16 22 C -0.12 -1.00 9.83 -39.54 -0.39 -1.39 16 23 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 24 Cl -0.04 -0.49 27.29 -51.86 -1.42 -1.91 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 27 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16 28 H 0.28 7.28 8.72 -40.82 -0.36 6.93 16 29 H 0.11 1.84 7.64 -51.91 -0.40 1.44 16 30 H 0.11 1.89 6.89 -51.92 -0.36 1.53 16 31 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -32.16 321.46 -8.85 -41.01 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -2.80 Total: -5.72 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.72 Total: -6.10 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.95 Total: -51.73 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 28.41 SS G_CDS: -4.40 Total: 24.01 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.34 Total: -2.79 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.16 -8.85 -41.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280000477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.633 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds