Wall clock time and date at job start Tue Mar 31 2020 14:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.01988 * 89.99857 * 17 16 15 19 19 F 1.35107 * 120.02022 * 359.97438 * 18 17 16 20 20 C 1.38451 * 119.96242 * 180.02562 * 18 17 16 21 21 C 1.38220 * 120.00065 * 359.97438 * 20 18 17 22 22 C 1.38202 * 120.03831 * 359.97438 * 21 20 18 23 23 C 1.38292 * 120.02065 * 269.72666 * 17 16 15 24 24 Cl 1.73596 * 119.99725 * 359.97438 * 23 17 16 25 25 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 26 26 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 27 27 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 28 28 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 29 29 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 30 30 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 31 31 H 1.08007 * 119.99815 * 179.97438 * 20 18 17 32 32 H 1.08002 * 119.98196 * 180.02562 * 21 20 18 33 33 H 1.08006 * 119.97902 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 6 3.1393 -5.7702 -1.2011 19 9 3.2282 -5.1000 -2.3709 20 6 2.9672 -7.1440 -1.2013 21 6 2.8758 -7.8292 -0.0044 22 6 2.9566 -7.1439 1.1930 23 6 3.1331 -5.7714 1.1951 24 17 3.2409 -4.9123 2.6997 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.5753 4.9451 0.0298 29 1 3.9654 -3.2905 -0.8867 30 1 3.9562 -3.2921 0.8932 31 1 2.9044 -7.6802 -2.1368 32 1 2.7420 -8.9009 -0.0049 33 1 2.8854 -7.6804 2.1277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280000477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:07 Heat of formation + Delta-G solvation = 10.128720 kcal Electronic energy + Delta-G solvation = -22048.265240 eV Core-core repulsion = 18368.356351 eV Total energy + Delta-G solvation = -3679.908889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.05403 -42.88760 -40.30856 -37.52158 -35.97322 -35.46059 -34.13366 -32.03836 -31.48558 -28.72640 -28.21651 -27.15303 -23.93301 -23.43962 -23.01651 -22.05707 -20.22771 -18.92453 -18.35714 -17.94022 -17.23944 -16.97529 -16.88485 -16.67075 -15.97138 -15.83609 -15.70164 -15.21373 -14.86404 -14.73641 -14.45366 -14.29543 -14.12132 -14.03619 -13.57655 -13.14580 -12.93271 -12.84091 -12.50072 -12.42194 -12.14625 -11.92709 -11.85662 -11.58119 -11.44625 -10.95570 -10.61150 -10.42023 -9.93524 -9.77869 -9.51937 -8.76676 -6.89808 -0.39861 -0.06065 0.46123 0.94404 0.97901 1.07544 1.51480 1.56649 1.90903 2.09143 2.17134 2.39331 2.41743 3.01364 3.12879 3.23063 3.51819 3.83537 3.89279 4.17938 4.20688 4.29687 4.33165 4.43447 4.50346 4.53024 4.65411 4.79830 4.97083 5.07175 5.17848 5.19024 5.34328 5.64008 5.66144 5.97701 6.35686 6.53358 7.89742 8.11050 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.003406 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.270559 B = 8218.566160 C = 8353.723448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.515 5.515 3 C 0.326 3.674 4 C -0.508 4.508 5 H 0.085 0.915 6 C 0.044 3.956 7 N -0.821 5.821 8 Si 1.143 2.857 9 H -0.295 1.295 10 H -0.278 1.278 11 H -0.296 1.296 12 N -0.447 5.447 13 N -0.310 5.310 14 C 0.080 3.920 15 S 0.017 5.983 16 C -0.057 4.057 17 C -0.124 4.124 18 C 0.108 3.892 19 F -0.140 7.140 20 C -0.142 4.142 21 C -0.054 4.054 22 C -0.114 4.114 23 C -0.007 4.007 24 Cl -0.058 7.058 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.287 0.713 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.171 0.829 32 H 0.190 0.810 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 -27.435 0.999 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.079 3.921 4 C -0.549 4.549 5 H 0.104 0.896 6 C -0.177 4.177 7 N -0.446 5.446 8 Si 0.972 3.028 9 H -0.224 1.224 10 H -0.205 1.205 11 H -0.223 1.223 12 N -0.296 5.296 13 N -0.152 5.152 14 C -0.295 4.295 15 S 0.246 5.754 16 C -0.206 4.206 17 C -0.128 4.128 18 C 0.087 3.913 19 F -0.118 7.118 20 C -0.160 4.160 21 C -0.073 4.073 22 C -0.132 4.132 23 C -0.036 4.036 24 Cl -0.029 7.029 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.189 0.811 32 H 0.207 0.793 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.125 -27.053 0.974 27.154 hybrid contribution -1.859 1.143 0.063 2.183 sum -3.984 -25.910 1.037 26.235 Atomic orbital electron populations 1.21918 0.74625 1.04656 1.03795 1.46196 1.08405 1.04059 1.62804 1.21811 0.85660 0.89914 0.94692 1.19415 0.97540 0.87479 1.50451 0.89649 1.27717 1.09595 0.91501 0.88841 1.70662 1.21940 1.18376 1.33641 0.82238 0.69808 0.71858 0.78860 1.22398 1.20478 1.22319 1.73867 1.17129 1.02123 1.36473 1.74195 1.17127 1.04958 1.18919 1.26480 0.90366 0.95804 1.16895 1.84513 1.10185 0.86157 1.94532 1.22153 0.97536 0.93330 1.07534 1.19088 1.07850 0.93055 0.92831 1.17691 1.02439 0.91429 0.79737 1.91526 1.93428 1.81153 1.45736 1.21650 1.01441 0.90429 1.02495 1.21541 0.94146 1.02445 0.89147 1.21535 0.99673 0.90270 1.01760 1.20802 1.03193 0.93733 0.85890 1.98415 1.96211 1.77610 1.30642 0.90272 0.88418 0.89636 0.90167 0.89143 0.88124 0.81104 0.79298 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.19 10.89 127.77 1.39 4.58 16 2 N -0.51 -24.20 3.26 -543.63 -1.77 -25.97 16 3 C 0.33 17.97 7.27 133.23 0.97 18.94 16 4 C -0.51 -28.07 9.50 23.09 0.22 -27.85 16 5 H 0.09 4.54 7.46 -2.91 -0.02 4.52 16 6 C 0.04 2.44 5.52 85.29 0.47 2.91 16 7 N -0.82 -44.89 13.65 21.86 0.30 -44.59 16 8 Si 1.14 59.55 25.90 68.60 1.78 61.32 16 9 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 10 H -0.28 -15.16 6.76 99.48 0.67 -14.49 16 11 H -0.30 -15.95 7.11 99.48 0.71 -15.25 16 12 N -0.45 -25.96 7.52 -55.02 -0.41 -26.38 16 13 N -0.31 -16.59 11.62 -56.17 -0.65 -17.24 16 14 C 0.08 3.70 8.09 179.18 1.45 5.15 16 15 S 0.02 0.59 21.77 -56.49 -1.23 -0.64 16 16 C -0.06 -1.84 4.78 71.24 0.34 -1.50 16 17 C -0.12 -3.06 5.14 -19.80 -0.10 -3.16 16 18 C 0.11 2.34 7.24 22.37 0.16 2.50 16 19 F -0.14 -3.68 16.48 44.97 0.74 -2.93 16 20 C -0.14 -1.78 10.03 22.32 0.22 -1.56 16 21 C -0.05 -0.44 10.04 22.26 0.22 -0.21 16 22 C -0.11 -1.38 9.83 22.30 0.22 -1.16 16 23 C -0.01 -0.15 6.31 22.32 0.14 -0.01 16 24 Cl -0.06 -1.35 27.29 -2.72 -0.07 -1.42 16 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.10 2.82 7.85 -2.39 -0.02 2.80 16 27 H 0.08 2.87 7.48 -2.39 -0.02 2.86 16 28 H 0.29 14.89 8.72 -92.71 -0.81 14.08 16 29 H 0.09 3.19 7.64 -2.39 -0.02 3.17 16 30 H 0.10 3.46 6.89 -2.40 -0.02 3.44 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 33 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -72.52 321.46 5.48 -67.04 By element: Atomic # 1 Polarization: -8.91 SS G_CDS: 1.09 Total: -7.82 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.71 Total: -1.37 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -2.54 Total: -114.18 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.74 Total: -2.93 kcal Atomic # 14 Polarization: 59.55 SS G_CDS: 1.78 Total: 61.32 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.23 Total: -0.64 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -72.52 5.48 -67.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280000477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.170 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds