Wall clock time and date at job start Tue Mar 31 2020 14:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46668 * 179.97438 * 16 15 14 18 18 C 1.38267 * 119.96812 * 89.99768 * 17 16 15 19 19 C 1.38194 * 120.04686 * 179.97438 * 18 17 16 20 20 C 1.38442 * 119.99008 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.03448 * 179.97438 * 20 19 18 22 22 C 1.38549 * 119.93896 * 359.97438 * 20 19 18 23 23 Cl 1.73598 * 120.02653 * 180.02562 * 22 20 19 24 24 C 1.38211 * 119.96895 * 269.71711 * 17 16 15 25 25 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 26 26 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 27 27 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 28 28 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 30 30 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 31 31 H 1.07993 * 119.97915 * 0.02562 * 18 17 16 32 32 H 1.08007 * 120.00737 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.99750 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2192 -5.0834 -0.0006 18 6 3.1397 -5.7683 -1.1991 19 6 2.9690 -7.1396 -1.2024 20 6 2.8770 -7.8284 -0.0050 21 9 2.7096 -9.1690 -0.0071 22 6 2.9568 -7.1416 1.1957 23 17 2.8424 -8.0031 2.6985 24 6 3.1335 -5.7697 1.1961 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 4.7840 3.8444 -0.4539 29 1 3.9655 -3.2904 -0.8860 30 1 3.9562 -3.2918 0.8940 31 1 3.2118 -5.2313 -2.1333 32 1 2.9065 -7.6739 -2.1389 33 1 3.1999 -5.2342 2.1316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280037972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:11 Heat of formation + Delta-G solvation = 36.517683 kcal Electronic energy + Delta-G solvation = -21351.634997 eV Core-core repulsion = 17672.870419 eV Total energy + Delta-G solvation = -3678.764578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.20160 -40.56703 -39.52028 -36.82688 -33.75250 -33.40792 -32.65040 -31.23936 -29.40474 -27.12837 -26.45528 -25.49503 -23.45926 -22.02142 -20.88998 -20.46033 -18.06275 -17.43046 -16.94735 -16.59569 -16.04111 -15.80013 -15.49788 -14.82310 -14.70444 -14.41963 -14.29095 -13.96582 -13.83386 -13.35814 -13.04125 -12.80294 -12.34237 -12.29522 -12.17502 -11.74767 -11.63495 -11.41189 -11.32729 -11.16518 -10.98122 -10.50459 -10.40198 -9.80106 -9.64184 -9.27106 -8.81021 -8.76675 -8.51408 -8.43189 -6.92874 -6.71593 -4.62421 0.56167 0.77042 1.73604 2.01482 2.67406 2.87484 3.03710 3.07673 3.27297 3.30341 3.79516 3.83424 4.18183 4.31535 4.35891 4.39480 4.78315 4.87616 5.10344 5.26666 5.45172 5.49533 5.51056 5.63020 5.78305 5.84337 5.89985 6.00123 6.14946 6.38709 6.70210 6.84209 7.18721 7.42705 7.82586 8.13024 8.65048 8.79938 10.21930 10.56505 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.002368 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.400700 B =11821.733880 C =11880.234505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.515 5.515 3 C 0.349 3.651 4 C -0.448 4.448 5 H 0.085 0.915 6 C 0.080 3.920 7 N -0.737 5.737 8 Si 0.920 3.080 9 H -0.269 1.269 10 H -0.262 1.262 11 H -0.274 1.274 12 N -0.335 5.335 13 N -0.284 5.284 14 C 0.041 3.959 15 S -0.042 6.042 16 C -0.056 4.056 17 C -0.064 4.064 18 C -0.068 4.068 19 C -0.141 4.141 20 C 0.107 3.893 21 F -0.129 7.129 22 C -0.073 4.073 23 Cl -0.052 7.052 24 C -0.065 4.065 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.280 0.720 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -16.160 0.131 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.105 3.895 4 C -0.488 4.488 5 H 0.103 0.897 6 C -0.146 4.146 7 N -0.361 5.361 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.186 1.186 11 H -0.199 1.199 12 N -0.183 5.183 13 N -0.130 5.130 14 C -0.330 4.330 15 S 0.187 5.813 16 C -0.204 4.204 17 C -0.066 4.066 18 C -0.088 4.088 19 C -0.160 4.160 20 C 0.086 3.914 21 F -0.107 7.107 22 C -0.101 4.101 23 Cl -0.023 7.023 24 C -0.086 4.086 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.711 -16.682 0.240 17.091 hybrid contribution -0.542 1.208 0.210 1.341 sum -4.253 -15.473 0.450 16.053 Atomic orbital electron populations 1.21497 0.78484 1.02669 1.01700 1.46040 1.06099 1.05290 1.64288 1.21617 0.84716 0.88417 0.94753 1.18107 0.95315 0.86475 1.48927 0.89736 1.25790 0.94304 1.01346 0.93135 1.69986 1.01692 1.35160 1.29274 0.86112 0.79422 0.80836 0.79235 1.19450 1.18553 1.19868 1.75423 1.15376 0.97896 1.29583 1.74511 1.15130 1.07627 1.15778 1.25317 0.91601 0.92609 1.23516 1.84631 1.09242 0.91646 1.95752 1.22225 0.98605 0.91136 1.08468 1.19427 1.00088 0.94404 0.92678 1.21123 0.96022 0.92966 0.98649 1.21116 1.03243 0.94912 0.96715 1.17433 1.03251 0.77684 0.93040 1.91534 1.92724 1.29205 1.97273 1.20927 1.09084 0.93387 0.86686 1.98389 1.96594 1.76597 1.30676 1.20946 0.97212 0.90879 0.99554 0.92470 0.91577 0.90347 0.90892 0.87524 0.87697 0.83707 0.83557 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.89 59.84 0.65 2.45 16 2 N -0.51 -12.11 3.26 -123.17 -0.40 -12.51 16 3 C 0.35 9.55 7.50 -154.80 -1.16 8.39 16 4 C -0.45 -11.64 9.05 -38.31 -0.35 -11.99 16 5 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 6 C 0.08 2.01 5.49 -17.29 -0.09 1.91 16 7 N -0.74 -19.90 12.00 55.56 0.67 -19.23 16 8 Si 0.92 18.17 29.57 -169.99 -5.03 13.14 16 9 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 10 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 12 N -0.34 -9.85 10.56 31.26 0.33 -9.52 16 13 N -0.28 -7.51 11.62 30.89 0.36 -7.16 16 14 C 0.04 0.95 8.09 -87.28 -0.71 0.24 16 15 S -0.04 -0.71 21.77 -107.50 -2.34 -3.05 16 16 C -0.06 -0.80 5.35 36.01 0.19 -0.60 16 17 C -0.06 -0.73 5.13 -104.62 -0.54 -1.27 16 18 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 19 C -0.14 -1.29 10.03 -39.52 -0.40 -1.68 16 20 C 0.11 1.14 7.28 -39.39 -0.29 0.85 16 21 F -0.13 -1.44 16.84 2.25 0.04 -1.40 16 22 C -0.07 -0.81 6.33 -39.43 -0.25 -1.06 16 23 Cl -0.05 -0.55 28.62 -51.86 -1.48 -2.04 16 24 C -0.07 -0.72 9.48 -39.56 -0.38 -1.10 16 25 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 27 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 28 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 29 H 0.11 1.57 8.09 -51.91 -0.42 1.15 16 30 H 0.10 1.57 8.08 -51.92 -0.42 1.15 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -31.77 329.23 -9.43 -41.20 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -2.84 Total: 0.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.69 Total: -4.89 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.95 Total: -48.41 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.34 Total: -3.05 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.77 -9.43 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280037972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.717 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds