Wall clock time and date at job start Tue Mar 31 2020 14:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46668 * 179.97438 * 16 15 14 18 18 C 1.38267 * 119.96812 * 89.99768 * 17 16 15 19 19 C 1.38194 * 120.04686 * 179.97438 * 18 17 16 20 20 C 1.38442 * 119.99008 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.03448 * 179.97438 * 20 19 18 22 22 C 1.38549 * 119.93896 * 359.97438 * 20 19 18 23 23 Cl 1.73598 * 120.02653 * 180.02562 * 22 20 19 24 24 C 1.38211 * 119.96895 * 269.71711 * 17 16 15 25 25 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 26 26 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 27 27 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 28 28 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 30 30 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 31 31 H 1.07993 * 119.97915 * 0.02562 * 18 17 16 32 32 H 1.08007 * 120.00737 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.99750 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2192 -5.0834 -0.0006 18 6 3.1397 -5.7683 -1.1991 19 6 2.9690 -7.1396 -1.2024 20 6 2.8770 -7.8284 -0.0050 21 9 2.7096 -9.1690 -0.0071 22 6 2.9568 -7.1416 1.1957 23 17 2.8424 -8.0031 2.6985 24 6 3.1335 -5.7697 1.1961 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 4.7840 3.8444 -0.4539 29 1 3.9655 -3.2904 -0.8860 30 1 3.9562 -3.2918 0.8940 31 1 3.2118 -5.2313 -2.1333 32 1 2.9065 -7.6739 -2.1389 33 1 3.1999 -5.2342 2.1316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280037972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:10 Heat of formation + Delta-G solvation = 20.039150 kcal Electronic energy + Delta-G solvation = -21352.349560 eV Core-core repulsion = 17672.870419 eV Total energy + Delta-G solvation = -3679.479141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.030 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.05188 -42.44298 -40.37257 -37.67084 -35.61760 -35.15737 -33.63259 -32.05752 -31.31012 -28.46606 -27.88146 -27.25039 -24.27118 -23.05217 -22.75225 -22.15910 -19.26334 -18.89744 -18.00381 -17.81384 -17.27193 -16.91697 -16.77951 -16.54534 -16.23275 -15.60059 -15.30024 -15.12247 -14.93877 -14.71745 -14.02769 -13.98512 -13.80397 -13.76712 -13.28919 -13.06198 -12.95770 -12.74217 -12.59355 -12.46368 -12.02113 -12.00277 -11.85410 -11.67287 -11.40831 -10.57234 -10.39393 -10.26921 -10.07690 -9.67834 -8.57036 -8.52304 -6.56968 -0.37210 -0.04251 0.61324 0.90635 1.20398 1.25695 1.42689 1.58981 1.62358 2.18919 2.39535 2.45086 2.53048 2.96701 3.34247 3.36730 3.57501 3.87856 4.04573 4.08815 4.19447 4.46205 4.53401 4.62936 4.64302 4.77717 4.81498 4.89837 4.97079 4.98991 5.28461 5.32715 5.56977 5.57834 6.04975 6.23079 6.76489 6.92948 8.40878 8.64684 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.002368 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.400700 B =11821.733880 C =11880.234505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.319 3.681 4 C -0.473 4.473 5 H 0.103 0.897 6 C 0.031 3.969 7 N -0.789 5.789 8 Si 1.005 2.995 9 H -0.260 1.260 10 H -0.249 1.249 11 H -0.272 1.272 12 N -0.391 5.391 13 N -0.328 5.328 14 C 0.053 3.947 15 S 0.003 5.997 16 C -0.050 4.050 17 C -0.073 4.073 18 C -0.062 4.062 19 C -0.129 4.129 20 C 0.103 3.897 21 F -0.132 7.132 22 C -0.082 4.082 23 Cl -0.052 7.052 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 -17.010 -0.392 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.223 5.223 3 C 0.073 3.927 4 C -0.513 4.513 5 H 0.120 0.880 6 C -0.190 4.190 7 N -0.414 5.414 8 Si 0.823 3.177 9 H -0.184 1.184 10 H -0.172 1.172 11 H -0.197 1.197 12 N -0.237 5.237 13 N -0.172 5.172 14 C -0.321 4.321 15 S 0.232 5.768 16 C -0.199 4.199 17 C -0.075 4.075 18 C -0.081 4.081 19 C -0.148 4.148 20 C 0.082 3.918 21 F -0.110 7.110 22 C -0.110 4.110 23 Cl -0.023 7.023 24 C -0.088 4.088 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.181 0.819 32 H 0.194 0.806 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.580 -17.549 -0.282 18.417 hybrid contribution -0.016 1.170 0.362 1.225 sum -5.596 -16.379 0.081 17.308 Atomic orbital electron populations 1.21848 0.75322 1.04421 1.03355 1.46392 1.08091 1.04490 1.63359 1.22015 0.85115 0.89902 0.95681 1.18602 0.96522 0.86577 1.49648 0.87953 1.26949 0.93845 1.06380 0.91786 1.70126 1.03306 1.37067 1.30905 0.84870 0.79258 0.73922 0.79607 1.18439 1.17188 1.19680 1.75277 1.17387 0.99362 1.31718 1.74384 1.17125 1.06974 1.18749 1.26484 0.91047 0.95636 1.18911 1.84456 1.10675 0.86666 1.94959 1.22225 0.97003 0.92859 1.07783 1.19217 1.02054 0.92557 0.93715 1.21336 0.94808 0.93363 0.98627 1.21387 1.01559 0.94517 0.97317 1.17654 1.03087 0.77638 0.93465 1.91531 1.92727 1.29464 1.97303 1.20986 1.09618 0.93402 0.86987 1.98388 1.96623 1.76538 1.30798 1.20961 0.97112 0.91037 0.99641 0.90769 0.89087 0.89385 0.90497 0.88022 0.88763 0.81941 0.80618 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.15 10.89 127.77 1.39 4.54 16 2 N -0.52 -24.51 3.26 -543.61 -1.77 -26.28 16 3 C 0.32 17.94 7.50 133.23 1.00 18.94 16 4 C -0.47 -24.95 9.05 23.09 0.21 -24.74 16 5 H 0.10 4.78 7.27 -2.92 -0.02 4.75 16 6 C 0.03 1.59 5.49 85.29 0.47 2.06 16 7 N -0.79 -44.19 12.00 21.85 0.26 -43.93 16 8 Si 1.00 37.22 29.57 68.60 2.03 39.25 16 9 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 10 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 11 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 12 N -0.39 -23.97 10.56 -55.01 -0.58 -24.55 16 13 N -0.33 -17.92 11.62 -56.17 -0.65 -18.57 16 14 C 0.05 2.44 8.09 179.18 1.45 3.89 16 15 S 0.00 0.11 21.77 -56.49 -1.23 -1.12 16 16 C -0.05 -1.39 5.35 71.24 0.38 -1.01 16 17 C -0.07 -1.54 5.13 -19.86 -0.10 -1.65 16 18 C -0.06 -1.03 9.70 22.27 0.22 -0.82 16 19 C -0.13 -1.94 10.03 22.31 0.22 -1.72 16 20 C 0.10 1.95 7.28 22.39 0.16 2.11 16 21 F -0.13 -2.66 16.84 44.97 0.76 -1.90 16 22 C -0.08 -1.69 6.33 22.37 0.14 -1.54 16 23 Cl -0.05 -1.07 28.62 -2.72 -0.08 -1.14 16 24 C -0.07 -1.39 9.48 22.28 0.21 -1.18 16 25 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 27 H 0.09 2.79 7.48 -2.39 -0.02 2.77 16 28 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 29 H 0.10 2.95 8.09 -2.39 -0.02 2.93 16 30 H 0.09 2.84 8.08 -2.40 -0.02 2.82 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.15 329.23 5.65 -66.50 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.17 Total: 12.87 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.75 Total: -1.12 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.74 Total: -113.33 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.76 Total: -1.90 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.23 Total: -1.12 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.14 kcal Total: -72.15 5.65 -66.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280037972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.540 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds