Wall clock time and date at job start Tue Mar 31 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.38418 * 122.53697 * 269.73746 * 9 6 5 11 11 C 1.33394 * 114.91994 * 179.76157 * 10 9 6 12 12 S 1.75887 * 109.59223 * 0.47371 * 11 10 9 13 13 C 1.33384 * 122.53812 * 90.02093 * 9 6 5 14 14 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 16 16 C 1.46498 * 125.97191 * 359.96192 * 15 2 1 17 17 C 1.50707 * 109.47366 * 90.00120 * 16 15 2 18 18 H 1.08005 * 119.99361 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46994 * 120.00062 * 21 19 17 24 24 H 1.48492 * 109.47549 * 239.99918 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 28 28 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 29 29 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 30 30 H 1.08001 * 122.54199 * 359.97438 * 10 9 6 31 31 H 1.07995 * 125.20428 * 180.20856 * 11 10 9 32 32 H 1.08000 * 125.20645 * 0.02699 * 13 9 6 33 33 H 1.09006 * 109.47531 * 210.00084 * 16 15 2 34 34 H 1.09008 * 109.47462 * 330.00263 * 16 15 2 35 35 H 0.96996 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.1168 -1.3899 -1.6834 11 6 6.3151 -1.8835 -2.9067 12 16 6.9925 -0.6349 -3.9439 13 6 6.9599 0.5236 -2.6208 14 7 3.6337 -0.6577 -0.0044 15 7 2.3016 -1.0909 -0.0060 16 6 1.8499 -2.4845 -0.0129 17 6 1.6942 -2.9551 -1.4361 18 1 1.9098 -2.2831 -2.2537 19 6 1.2766 -4.2435 -1.6944 20 7 1.0136 -5.0616 -0.6988 21 14 1.0831 -4.8266 -3.4584 22 1 1.4382 -3.7229 -4.3864 23 1 1.9824 -5.9835 -3.6988 24 1 -0.3247 -5.2370 -3.6925 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1212 0.0007 29 1 4.6741 2.4387 0.0105 30 1 5.7102 -1.9821 -0.8769 31 1 6.0974 -2.8962 -3.2123 32 1 7.2889 1.5504 -2.6841 33 1 2.5847 -3.1072 0.4974 34 1 0.8914 -2.5584 0.5011 35 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285087097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:37 Heat of formation + Delta-G solvation = 38.128387 kcal Electronic energy + Delta-G solvation = -23524.740294 eV Core-core repulsion = 19971.549573 eV Total energy + Delta-G solvation = -3553.190721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62704 -37.65508 -37.13233 -35.75322 -35.35950 -33.36186 -31.43315 -30.81434 -29.66611 -26.79058 -26.42780 -24.51116 -23.16952 -20.83272 -20.48901 -19.80972 -18.25450 -18.05004 -17.35432 -16.75528 -16.68469 -16.16471 -15.39254 -14.95980 -14.51596 -14.29797 -13.92008 -13.25379 -13.22690 -13.09515 -12.80760 -12.65245 -12.57832 -12.49416 -12.14777 -11.98465 -11.85406 -11.71244 -11.55293 -11.40290 -11.28090 -10.91752 -10.85121 -10.56162 -10.33296 -9.91528 -9.67809 -9.09623 -8.71440 -8.62318 -8.17094 -7.67861 -6.32213 -4.39878 0.32898 0.76572 1.61560 1.91170 2.40153 2.61640 2.87674 3.13649 3.22516 3.26654 3.29665 3.58687 3.87215 4.23056 4.49916 4.84530 4.96885 5.05541 5.22915 5.34556 5.53342 5.70407 5.95469 6.01931 6.07402 6.11819 6.22945 6.25948 6.48206 6.50870 6.71246 6.96360 7.10556 7.33979 7.59781 7.81249 7.91282 8.43629 8.67281 9.26630 10.75321 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005464 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.292351 B = 5122.778424 C = 6735.394097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.108 3.892 3 C -0.308 4.308 4 C 0.281 3.719 5 N -1.013 6.013 6 S 2.710 3.290 7 O -0.963 6.963 8 O -0.926 6.926 9 C -0.669 4.669 10 C -0.048 4.048 11 C -0.215 4.215 12 S 0.125 5.875 13 C -0.101 4.101 14 N -0.313 5.313 15 N -0.310 5.310 16 C 0.256 3.744 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.280 1.280 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.430 0.570 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 11.889 -3.213 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C -0.342 4.342 4 C 0.026 3.974 5 N -0.767 5.767 6 S 2.798 3.202 7 O -0.953 6.953 8 O -0.916 6.916 9 C -0.771 4.771 10 C -0.076 4.076 11 C -0.351 4.351 12 S 0.387 5.613 13 C -0.240 4.240 14 N -0.143 5.143 15 N -0.092 5.092 16 C 0.138 3.862 17 C -0.574 4.574 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.206 1.206 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.267 0.733 30 H 0.184 0.816 31 H 0.190 0.810 32 H 0.197 0.803 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.530 10.384 -4.034 13.446 hybrid contribution -1.352 0.418 -0.280 1.442 sum 6.178 10.802 -4.315 13.171 Atomic orbital electron populations 1.20423 0.87714 1.04062 1.02785 1.20925 0.94863 0.86997 0.99681 1.20552 0.89831 0.98905 1.24895 1.18527 0.86739 0.89875 1.02266 1.52555 1.20091 1.16269 1.87761 1.01591 0.71527 0.73208 0.73890 1.93586 1.59532 1.54627 1.87546 1.93631 1.84770 1.59870 1.53307 1.29856 1.17577 1.07845 1.21802 1.19902 0.96827 0.92261 0.98611 1.25774 1.09067 1.03569 0.96653 1.84083 1.59864 1.02996 1.14372 1.25679 0.99637 1.03570 0.95144 1.77345 1.00239 1.07484 1.29272 1.49007 1.00630 1.07913 1.51607 1.19774 0.96195 0.71126 0.99070 1.21326 1.46917 0.97952 0.91232 0.91635 1.24908 0.94725 0.96078 0.97961 1.69924 1.44723 1.06982 1.31039 0.86356 0.77981 0.78818 0.83867 1.19606 1.20661 1.20620 0.90817 0.89678 0.90555 0.84297 0.73347 0.81585 0.81018 0.80336 0.92615 0.92642 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.89 36.01 0.36 -0.99 16 2 C 0.11 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.31 -5.21 10.74 -39.82 -0.43 -5.64 16 4 C 0.28 5.15 7.72 -154.55 -1.19 3.96 16 5 N -1.01 -14.79 5.91 31.39 0.19 -14.60 16 6 S 2.71 43.03 5.55 -107.50 -0.60 42.44 16 7 O -0.96 -15.21 17.64 -57.17 -1.01 -16.22 16 8 O -0.93 -18.10 16.84 -57.17 -0.96 -19.07 16 9 C -0.67 -10.49 5.83 -41.21 -0.24 -10.73 16 10 C -0.05 -0.84 9.00 -41.21 -0.37 -1.21 16 11 C -0.22 -3.30 11.23 29.04 0.33 -2.97 16 12 S 0.12 1.56 23.34 -107.50 -2.51 -0.95 16 13 C -0.10 -1.33 10.70 29.04 0.31 -1.02 16 14 N -0.31 -6.74 10.45 31.41 0.33 -6.41 16 15 N -0.31 -6.79 3.59 -58.32 -0.21 -7.00 16 16 C 0.26 6.18 5.81 -5.19 -0.03 6.15 16 17 C -0.54 -13.85 9.39 -34.44 -0.32 -14.17 16 18 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 19 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 21 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.43 4.54 8.96 -34.47 -0.31 4.23 16 30 H 0.17 3.20 7.51 -52.49 -0.39 2.81 16 31 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.18 1.80 8.00 -52.49 -0.42 1.38 16 33 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.32 7.65 -51.92 -0.40 0.93 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -32.28 336.64 -9.82 -42.11 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -3.58 Total: 6.32 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.26 Total: -23.54 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 1.04 Total: -51.34 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.97 Total: -35.29 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 44.60 SS G_CDS: -3.11 Total: 41.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.28 -9.82 -42.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285087097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.234 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds