Wall clock time and date at job start Tue Mar 31 2020 14:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.38418 * 122.53697 * 269.73746 * 9 6 5 11 11 C 1.33394 * 114.91994 * 179.76157 * 10 9 6 12 12 S 1.75887 * 109.59223 * 0.47371 * 11 10 9 13 13 C 1.33384 * 122.53812 * 90.02093 * 9 6 5 14 14 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 16 16 C 1.46498 * 125.97191 * 359.96192 * 15 2 1 17 17 C 1.50707 * 109.47366 * 90.00120 * 16 15 2 18 18 H 1.08005 * 119.99361 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46994 * 120.00062 * 21 19 17 24 24 H 1.48492 * 109.47549 * 239.99918 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 28 28 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 29 29 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 30 30 H 1.08001 * 122.54199 * 359.97438 * 10 9 6 31 31 H 1.07995 * 125.20428 * 180.20856 * 11 10 9 32 32 H 1.08000 * 125.20645 * 0.02699 * 13 9 6 33 33 H 1.09006 * 109.47531 * 210.00084 * 16 15 2 34 34 H 1.09008 * 109.47462 * 330.00263 * 16 15 2 35 35 H 0.96996 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.1168 -1.3899 -1.6834 11 6 6.3151 -1.8835 -2.9067 12 16 6.9925 -0.6349 -3.9439 13 6 6.9599 0.5236 -2.6208 14 7 3.6337 -0.6577 -0.0044 15 7 2.3016 -1.0909 -0.0060 16 6 1.8499 -2.4845 -0.0129 17 6 1.6942 -2.9551 -1.4361 18 1 1.9098 -2.2831 -2.2537 19 6 1.2766 -4.2435 -1.6944 20 7 1.0136 -5.0616 -0.6988 21 14 1.0831 -4.8266 -3.4584 22 1 1.4382 -3.7229 -4.3864 23 1 1.9824 -5.9835 -3.6988 24 1 -0.3247 -5.2370 -3.6925 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1212 0.0007 29 1 4.6741 2.4387 0.0105 30 1 5.7102 -1.9821 -0.8769 31 1 6.0974 -2.8962 -3.2123 32 1 7.2889 1.5504 -2.6841 33 1 2.5847 -3.1072 0.4974 34 1 0.8914 -2.5584 0.5011 35 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285087097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:36 Heat of formation + Delta-G solvation = 15.781872 kcal Electronic energy + Delta-G solvation = -23525.709312 eV Core-core repulsion = 19971.549573 eV Total energy + Delta-G solvation = -3554.159739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09697 -38.83153 -38.45343 -37.10998 -36.78548 -35.23974 -32.78854 -32.52255 -30.82544 -28.51355 -27.83329 -25.66332 -24.99538 -22.25786 -21.79254 -21.17361 -19.55107 -19.22425 -18.80738 -18.62456 -17.94976 -17.42649 -17.00621 -16.42257 -16.07719 -15.88109 -15.19066 -14.72058 -14.47397 -14.38371 -14.18095 -14.10464 -13.83410 -13.66902 -13.48631 -13.41487 -13.33260 -13.22784 -13.15759 -12.76780 -12.71005 -12.66993 -12.39290 -12.21753 -11.78184 -11.49846 -11.34647 -10.72274 -10.23678 -9.72848 -9.63663 -9.18506 -8.30835 -6.47133 -0.90027 -0.36207 0.53564 0.75792 1.12482 1.15420 1.36217 1.38631 1.48104 1.54463 1.91689 2.16583 2.35573 2.61134 2.99740 3.24716 3.65977 3.84159 3.93164 4.15010 4.39997 4.44395 4.65049 4.77598 4.83258 4.85578 4.94196 5.00727 5.05973 5.13900 5.19649 5.30873 5.57086 5.76984 5.84156 6.01360 6.29363 6.65768 6.97011 7.23514 8.75828 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005464 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.292351 B = 5122.778424 C = 6735.394097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.096 3.904 3 C -0.298 4.298 4 C 0.283 3.717 5 N -0.997 5.997 6 S 2.727 3.273 7 O -0.960 6.960 8 O -0.971 6.971 9 C -0.691 4.691 10 C -0.073 4.073 11 C -0.239 4.239 12 S 0.201 5.799 13 C -0.094 4.094 14 N -0.355 5.355 15 N -0.340 5.340 16 C 0.274 3.726 17 C -0.542 4.542 18 H 0.054 0.946 19 C 0.023 3.977 20 N -0.920 5.920 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.269 1.269 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.183 0.817 29 H 0.449 0.551 30 H 0.131 0.869 31 H 0.175 0.825 32 H 0.215 0.785 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 14.422 -5.383 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 C -0.330 4.330 4 C 0.026 3.974 5 N -0.754 5.754 6 S 2.816 3.184 7 O -0.950 6.950 8 O -0.961 6.961 9 C -0.794 4.794 10 C -0.101 4.101 11 C -0.374 4.374 12 S 0.463 5.537 13 C -0.233 4.233 14 N -0.186 5.186 15 N -0.123 5.123 16 C 0.155 3.845 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.178 4.178 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.194 1.194 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.200 0.800 29 H 0.290 0.710 30 H 0.149 0.851 31 H 0.193 0.807 32 H 0.232 0.768 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.418 12.977 -6.183 16.175 hybrid contribution -1.236 -0.272 0.352 1.314 sum 6.182 12.704 -5.831 15.285 Atomic orbital electron populations 1.20544 0.85202 1.04677 1.04150 1.21725 0.96645 0.86326 0.98772 1.21023 0.88575 1.00403 1.23027 1.18848 0.88346 0.89430 1.00756 1.52346 1.18695 1.17070 1.87332 1.00867 0.71492 0.72527 0.73495 1.93577 1.59484 1.54307 1.87647 1.93580 1.85494 1.61354 1.55667 1.29590 1.20023 1.07309 1.22449 1.19739 0.98482 0.93240 0.98620 1.26008 1.09193 1.05089 0.97145 1.83798 1.57598 1.00342 1.11952 1.26215 0.97294 1.05270 0.94522 1.77313 1.00457 1.09568 1.31217 1.48750 1.01485 1.07662 1.54368 1.19237 0.94762 0.72665 0.97845 1.21431 1.46849 0.98155 0.91649 0.92807 1.25692 0.94235 0.96056 1.01829 1.70018 1.45411 1.07388 1.33020 0.85383 0.78354 0.78149 0.79079 1.19418 1.20397 1.19431 0.88987 0.91875 0.87020 0.79962 0.71002 0.85106 0.80711 0.76810 0.96301 0.92964 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.43 9.89 71.24 0.70 -1.72 16 2 C 0.10 3.48 6.92 41.39 0.29 3.76 16 3 C -0.30 -9.39 10.74 22.11 0.24 -9.15 16 4 C 0.28 10.18 7.72 133.39 1.03 11.20 16 5 N -1.00 -27.80 5.91 -54.61 -0.32 -28.12 16 6 S 2.73 85.91 5.55 -56.49 -0.31 85.59 16 7 O -0.96 -28.73 17.64 -128.00 -2.26 -30.99 16 8 O -0.97 -39.63 16.84 -128.00 -2.16 -41.79 16 9 C -0.69 -21.40 5.83 21.21 0.12 -21.27 16 10 C -0.07 -2.61 9.00 21.22 0.19 -2.42 16 11 C -0.24 -7.35 11.23 66.72 0.75 -6.60 16 12 S 0.20 4.51 23.34 -56.49 -1.32 3.19 16 13 C -0.09 -2.22 10.70 66.72 0.71 -1.51 16 14 N -0.36 -15.83 10.45 -54.54 -0.57 -16.40 16 15 N -0.34 -15.40 3.59 -338.42 -1.22 -16.61 16 16 C 0.27 14.01 5.81 85.64 0.50 14.51 16 17 C -0.54 -29.08 9.39 25.60 0.24 -28.84 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 19 C 0.02 1.20 5.46 84.65 0.46 1.66 16 20 N -0.92 -51.20 13.29 21.45 0.28 -50.91 16 21 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.04 7.71 -2.39 -0.02 2.02 16 27 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.45 8.30 8.96 -96.75 -0.87 7.44 16 30 H 0.13 5.57 7.51 -2.91 -0.02 5.55 16 31 H 0.18 5.04 8.06 -2.91 -0.02 5.01 16 32 H 0.22 3.39 8.00 -2.91 -0.02 3.37 16 33 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.05 2.64 7.65 -2.38 -0.02 2.62 16 35 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -72.81 336.64 -0.33 -73.14 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.27 Total: 19.50 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 5.24 Total: -40.37 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -1.82 Total: -112.05 kcal Atomic # 8 Polarization: -68.36 SS G_CDS: -4.41 Total: -72.78 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 90.42 SS G_CDS: -1.63 Total: 88.78 kcal Total: -72.81 -0.33 -73.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285087097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.923 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds