Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00483 * 2 1 4 4 H 1.48501 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46662 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47283 * 59.99560 * 3 2 1 7 7 C 1.37878 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46314 * 299.99196 * 9 7 2 11 11 O 1.42893 * 109.47292 * 59.99292 * 9 7 2 12 12 C 1.53004 * 109.47053 * 179.97438 * 9 7 2 13 13 S 1.81398 * 109.46611 * 179.97438 * 12 9 7 14 14 C 1.76202 * 102.99650 * 180.02562 * 13 12 9 15 15 N 1.29647 * 125.41394 * 359.97438 * 14 13 12 16 16 N 1.37759 * 115.60594 * 179.97438 * 15 14 13 17 17 C 1.29586 * 115.62491 * 0.02562 * 16 15 14 18 18 N 1.38994 * 125.40211 * 180.26322 * 17 16 15 19 19 C 1.46500 * 120.00087 * 359.68700 * 18 17 16 20 20 C 1.50707 * 109.47068 * 180.02562 * 19 18 17 21 21 C 1.34510 * 125.78601 * 90.00730 * 20 19 18 22 22 C 1.41385 * 106.84301 * 180.02562 * 21 20 19 23 23 C 1.34521 * 106.83752 * 359.97438 * 22 21 20 24 24 O 1.34293 * 125.79117 * 269.69514 * 20 19 18 25 25 S 1.76039 * 109.19064 * 359.97438 * 17 16 15 26 26 H 0.97003 * 119.99575 * 0.02562 * 1 2 3 27 27 H 0.96702 * 113.99754 * 60.00496 * 11 9 7 28 28 H 1.09005 * 109.46948 * 59.99961 * 12 9 7 29 29 H 1.08994 * 109.46925 * 299.99638 * 12 9 7 30 30 H 0.97004 * 120.00410 * 179.69314 * 18 17 16 31 31 H 1.08996 * 109.47532 * 300.00110 * 19 18 17 32 32 H 1.08999 * 109.47287 * 60.00725 * 19 18 17 33 33 H 1.08005 * 126.58432 * 359.95330 * 21 20 19 34 34 H 1.07993 * 126.58442 * 179.97438 * 22 21 20 35 35 H 1.07995 * 125.78979 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4297 -2.5751 -1.1664 12 6 2.2452 -3.6622 0.0005 13 16 1.3380 -5.2331 0.0013 14 6 2.6266 -6.4348 0.0020 15 7 3.8967 -6.1745 0.0014 16 7 4.7294 -7.2719 0.0027 17 6 4.1373 -8.4246 0.0037 18 7 4.7773 -9.6585 0.0103 19 6 6.2408 -9.7247 0.0098 20 6 6.6784 -11.1668 0.0171 21 6 6.9064 -11.9250 -1.0703 22 6 7.2943 -13.2025 -0.6049 23 6 7.2808 -13.1482 0.7391 24 8 6.9126 -11.9110 1.1101 25 16 2.3941 -8.1798 0.0039 26 1 -0.4850 0.8401 -0.0004 27 1 0.9221 -2.5300 -1.9974 28 1 2.8718 -3.6044 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 4.2549 -10.4758 0.0151 31 1 6.6265 -9.2328 -0.8831 32 1 6.6275 -9.2229 0.8969 33 1 6.8102 -11.6175 -2.1012 34 1 7.5521 -14.0577 -1.2119 35 1 7.5279 -13.9605 1.4065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287431587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = 34.374537 kcal Electronic energy + Delta-G solvation = -21018.938879 eV Core-core repulsion = 17465.585379 eV Total energy + Delta-G solvation = -3553.353500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.07903 -39.34250 -36.62832 -35.98102 -33.51388 -32.22271 -31.82134 -30.04586 -29.61714 -26.57303 -25.38891 -24.52783 -22.26047 -21.50268 -21.15232 -20.62318 -19.58377 -17.94453 -17.27521 -17.23335 -16.48038 -16.31030 -15.58320 -15.03779 -14.71232 -14.65907 -14.39288 -14.19301 -13.90101 -13.76306 -13.33169 -13.21680 -13.15614 -12.67138 -12.44950 -11.80658 -11.34330 -11.23500 -10.97601 -10.94213 -10.79807 -10.44520 -10.31684 -10.03701 -9.89956 -9.53802 -9.24002 -9.10931 -8.74515 -8.66855 -8.36914 -7.33121 -6.10484 -4.30132 0.38775 0.88068 1.11565 1.13738 1.65517 2.07630 2.38683 2.42996 2.73299 2.97740 3.24289 3.32878 3.37280 4.05713 4.34033 4.51183 4.54084 4.61476 4.88860 5.07588 5.16927 5.18923 5.29666 5.42846 5.55425 5.79449 5.95878 5.96518 6.14343 6.33003 6.61016 6.62239 6.76574 7.49204 7.73889 7.98754 8.08579 8.71385 9.23671 9.46019 10.93598 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.002034 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.004954 B =13760.925904 C =14379.813799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.568 4.568 8 H 0.062 0.938 9 C 0.245 3.755 10 H 0.069 0.931 11 O -0.559 6.559 12 C -0.117 4.117 13 S 0.014 5.986 14 C 0.029 3.971 15 N -0.267 5.267 16 N -0.354 5.354 17 C 0.307 3.693 18 N -0.691 5.691 19 C 0.219 3.781 20 C -0.039 4.039 21 C -0.179 4.179 22 C -0.219 4.219 23 C -0.027 4.027 24 O -0.170 6.170 25 S 0.054 5.946 26 H 0.262 0.738 27 H 0.350 0.650 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.417 0.583 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.628 -26.585 -0.650 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.608 4.608 8 H 0.080 0.920 9 C 0.184 3.816 10 H 0.086 0.914 11 O -0.362 6.362 12 C -0.267 4.267 13 S 0.244 5.756 14 C -0.370 4.370 15 N -0.096 5.096 16 N -0.190 5.190 17 C -0.077 4.077 18 N -0.336 5.336 19 C 0.094 3.906 20 C -0.090 4.090 21 C -0.199 4.199 22 C -0.238 4.238 23 C -0.095 4.095 24 O -0.066 6.066 25 S 0.287 5.713 26 H 0.072 0.928 27 H 0.194 0.806 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.255 0.745 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.372 -26.255 0.114 27.878 hybrid contribution 2.247 0.440 -0.528 2.350 sum 11.619 -25.815 -0.414 28.312 Atomic orbital electron populations 1.70086 1.05953 1.26707 1.46348 1.25034 0.94785 0.99259 0.93556 0.86507 0.80234 0.83272 0.77772 1.19539 1.20758 1.20759 1.21522 0.93410 0.90271 1.55594 0.91993 1.19273 0.87505 0.87714 0.87070 0.91369 1.86591 1.38176 1.96017 1.15372 1.25078 1.03437 0.92061 1.06141 1.86107 1.03299 0.97157 1.88992 1.30868 1.01067 0.99444 1.05634 1.75509 0.98174 1.18536 1.17334 1.75074 1.25368 0.92843 1.25741 1.25813 0.92131 0.91243 0.98470 1.43778 1.05419 1.02286 1.82076 1.19616 0.79099 0.87078 1.04809 1.22221 1.07619 0.94639 0.84484 1.21775 1.04670 0.93739 0.99732 1.21915 1.07871 0.99167 0.94841 1.24191 1.03245 0.85748 0.96360 1.84063 1.66385 1.21341 1.34806 1.85501 1.03877 1.02355 1.79535 0.92774 0.80604 0.88983 0.89512 0.74537 0.88074 0.89468 0.82978 0.83087 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 12.84 55.43 0.71 -23.84 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.57 -15.09 8.76 -34.44 -0.30 -15.39 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.24 5.95 2.88 -27.88 -0.08 5.87 16 10 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -13.70 12.33 -35.23 -0.43 -14.14 16 12 C -0.12 -2.39 5.18 37.16 0.19 -2.20 16 13 S 0.01 0.26 21.81 -107.50 -2.34 -2.08 16 14 C 0.03 0.50 7.82 51.84 0.41 0.90 16 15 N -0.27 -4.94 11.62 31.12 0.36 -4.58 16 16 N -0.35 -5.85 11.68 30.85 0.36 -5.49 16 17 C 0.31 4.03 8.42 -87.39 -0.74 3.29 16 18 N -0.69 -6.50 5.72 -62.01 -0.35 -6.85 16 19 C 0.22 1.86 6.51 -5.19 -0.03 1.83 16 20 C -0.04 -0.31 6.69 -35.62 -0.24 -0.55 16 21 C -0.18 -1.26 10.81 -39.70 -0.43 -1.68 16 22 C -0.22 -1.32 10.91 -39.70 -0.43 -1.76 16 23 C -0.03 -0.16 12.09 29.42 0.36 0.20 16 24 O -0.17 -1.42 10.65 5.72 0.06 -1.36 16 25 S 0.05 0.71 23.39 -107.50 -2.51 -1.81 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.35 7.60 9.04 45.56 0.41 8.01 16 28 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 29 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 30 H 0.42 3.06 8.59 -40.82 -0.35 2.71 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -32.02 344.91 -8.23 -40.26 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.86 Total: 6.33 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.40 Total: -7.38 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.08 Total: -40.76 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.37 Total: -15.50 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -4.86 Total: -3.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.02 -8.23 -40.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287431587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.631 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds