Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00483 * 2 1 4 4 H 1.48501 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46662 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47283 * 59.99560 * 3 2 1 7 7 C 1.37878 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46314 * 299.99196 * 9 7 2 11 11 O 1.42893 * 109.47292 * 59.99292 * 9 7 2 12 12 C 1.53004 * 109.47053 * 179.97438 * 9 7 2 13 13 S 1.81398 * 109.46611 * 179.97438 * 12 9 7 14 14 C 1.76202 * 102.99650 * 180.02562 * 13 12 9 15 15 N 1.29647 * 125.41394 * 359.97438 * 14 13 12 16 16 N 1.37759 * 115.60594 * 179.97438 * 15 14 13 17 17 C 1.29586 * 115.62491 * 0.02562 * 16 15 14 18 18 N 1.38994 * 125.40211 * 180.26322 * 17 16 15 19 19 C 1.46500 * 120.00087 * 359.68700 * 18 17 16 20 20 C 1.50707 * 109.47068 * 180.02562 * 19 18 17 21 21 C 1.34510 * 125.78601 * 90.00730 * 20 19 18 22 22 C 1.41385 * 106.84301 * 180.02562 * 21 20 19 23 23 C 1.34521 * 106.83752 * 359.97438 * 22 21 20 24 24 O 1.34293 * 125.79117 * 269.69514 * 20 19 18 25 25 S 1.76039 * 109.19064 * 359.97438 * 17 16 15 26 26 H 0.97003 * 119.99575 * 0.02562 * 1 2 3 27 27 H 0.96702 * 113.99754 * 60.00496 * 11 9 7 28 28 H 1.09005 * 109.46948 * 59.99961 * 12 9 7 29 29 H 1.08994 * 109.46925 * 299.99638 * 12 9 7 30 30 H 0.97004 * 120.00410 * 179.69314 * 18 17 16 31 31 H 1.08996 * 109.47532 * 300.00110 * 19 18 17 32 32 H 1.08999 * 109.47287 * 60.00725 * 19 18 17 33 33 H 1.08005 * 126.58432 * 359.95330 * 21 20 19 34 34 H 1.07993 * 126.58442 * 179.97438 * 22 21 20 35 35 H 1.07995 * 125.78979 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4297 -2.5751 -1.1664 12 6 2.2452 -3.6622 0.0005 13 16 1.3380 -5.2331 0.0013 14 6 2.6266 -6.4348 0.0020 15 7 3.8967 -6.1745 0.0014 16 7 4.7294 -7.2719 0.0027 17 6 4.1373 -8.4246 0.0037 18 7 4.7773 -9.6585 0.0103 19 6 6.2408 -9.7247 0.0098 20 6 6.6784 -11.1668 0.0171 21 6 6.9064 -11.9250 -1.0703 22 6 7.2943 -13.2025 -0.6049 23 6 7.2808 -13.1482 0.7391 24 8 6.9126 -11.9110 1.1101 25 16 2.3941 -8.1798 0.0039 26 1 -0.4850 0.8401 -0.0004 27 1 0.9221 -2.5300 -1.9974 28 1 2.8718 -3.6044 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 4.2549 -10.4758 0.0151 31 1 6.6265 -9.2328 -0.8831 32 1 6.6275 -9.2229 0.8969 33 1 6.8102 -11.6175 -2.1012 34 1 7.5521 -14.0577 -1.2119 35 1 7.5279 -13.9605 1.4065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287431587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = 11.455346 kcal Electronic energy + Delta-G solvation = -21019.932730 eV Core-core repulsion = 17465.585379 eV Total energy + Delta-G solvation = -3554.347351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59248 -40.51776 -37.91728 -37.54627 -34.28975 -34.04800 -32.72661 -31.62861 -30.75312 -27.41614 -27.26701 -25.65508 -23.14389 -22.75546 -22.19668 -21.51586 -20.61492 -19.27293 -18.59789 -18.33178 -17.39369 -17.04010 -16.71132 -16.62926 -16.28283 -16.09291 -15.85437 -15.37767 -15.29383 -14.76139 -14.47544 -14.15529 -13.80751 -13.58609 -13.53398 -13.31445 -13.19904 -12.80488 -12.79356 -12.41112 -12.13309 -12.04478 -11.56844 -11.27363 -11.08769 -10.93567 -10.72797 -10.67127 -10.32529 -9.74264 -9.61348 -8.69422 -8.16919 -6.43171 -0.74600 -0.30194 -0.04193 0.27848 0.62620 1.18937 1.19363 1.41535 1.44129 1.55842 1.57494 1.88906 2.14675 2.39943 3.09804 3.48261 3.56001 4.00867 4.06541 4.07317 4.07619 4.20096 4.26777 4.29853 4.40953 4.84252 4.90211 4.96343 5.09185 5.38264 5.50872 5.52116 5.65757 5.96660 5.98738 6.11293 6.65733 6.92899 7.29013 7.46205 8.87717 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.002034 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.004954 B =13760.925904 C =14379.813799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.582 4.582 8 H 0.062 0.938 9 C 0.247 3.753 10 H 0.040 0.960 11 O -0.570 6.570 12 C -0.106 4.106 13 S 0.023 5.977 14 C 0.002 3.998 15 N -0.293 5.293 16 N -0.387 5.387 17 C 0.313 3.687 18 N -0.671 5.671 19 C 0.221 3.779 20 C -0.058 4.058 21 C -0.178 4.178 22 C -0.231 4.231 23 C -0.023 4.023 24 O -0.190 6.190 25 S 0.121 5.879 26 H 0.264 0.736 27 H 0.361 0.639 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.429 0.571 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.766 -28.872 -0.953 31.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.622 4.622 8 H 0.080 0.920 9 C 0.187 3.813 10 H 0.057 0.943 11 O -0.374 6.374 12 C -0.256 4.256 13 S 0.252 5.748 14 C -0.397 4.397 15 N -0.122 5.122 16 N -0.225 5.225 17 C -0.071 4.071 18 N -0.315 5.315 19 C 0.096 3.904 20 C -0.108 4.108 21 C -0.198 4.198 22 C -0.249 4.249 23 C -0.091 4.091 24 O -0.086 6.086 25 S 0.354 5.646 26 H 0.073 0.927 27 H 0.206 0.794 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.269 0.731 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.527 -28.593 -0.196 30.470 hybrid contribution 1.973 0.838 -0.437 2.188 sum 12.500 -27.755 -0.633 30.447 Atomic orbital electron populations 1.70201 1.07492 1.27630 1.47708 1.25853 0.95540 1.02748 0.93139 0.85462 0.79011 0.78993 0.77828 1.18997 1.20281 1.20361 1.21879 0.93611 0.91658 1.55035 0.92009 1.18990 0.87353 0.88869 0.86051 0.94269 1.86529 1.38784 1.96139 1.15977 1.24562 1.02258 0.92976 1.05804 1.85869 1.02971 0.95943 1.89982 1.30761 1.00594 1.01614 1.06782 1.75466 0.99000 1.20483 1.17293 1.75047 1.25377 0.93401 1.28713 1.26047 0.92768 0.91653 0.96583 1.43986 1.06138 1.01436 1.79976 1.19594 0.78172 0.87997 1.04590 1.22036 1.09475 0.94419 0.84868 1.22041 1.03609 0.94128 1.00020 1.22240 1.07989 0.99417 0.95292 1.24941 1.01604 0.85390 0.97158 1.84050 1.66926 1.22387 1.35257 1.85214 1.02625 0.98211 1.78540 0.92675 0.79359 0.89570 0.89572 0.73091 0.87705 0.90315 0.81988 0.81125 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.12 12.84 21.45 0.28 -51.85 16 2 C 0.03 1.69 5.40 84.66 0.46 2.14 16 3 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.58 -31.44 8.76 25.60 0.22 -31.21 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.25 12.37 2.88 29.85 0.09 12.45 16 10 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 11 O -0.57 -28.51 12.33 -148.98 -1.84 -30.35 16 12 C -0.11 -4.41 5.18 71.98 0.37 -4.03 16 13 S 0.02 0.83 21.81 -56.49 -1.23 -0.40 16 14 C 0.00 0.08 7.82 130.57 1.02 1.10 16 15 N -0.29 -10.84 11.62 -55.47 -0.64 -11.49 16 16 N -0.39 -12.58 11.68 -56.29 -0.66 -13.23 16 17 C 0.31 7.74 8.42 179.22 1.51 9.25 16 18 N -0.67 -11.41 5.72 -350.10 -2.00 -13.42 16 19 C 0.22 3.51 6.51 85.64 0.56 4.07 16 20 C -0.06 -0.83 6.69 24.83 0.17 -0.66 16 21 C -0.18 -2.14 10.81 22.19 0.24 -1.90 16 22 C -0.23 -2.20 10.91 22.19 0.24 -1.95 16 23 C -0.02 -0.21 12.09 66.97 0.81 0.60 16 24 O -0.19 -2.84 10.65 -2.45 -0.03 -2.86 16 25 S 0.12 2.92 23.39 -56.49 -1.32 1.60 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.36 15.93 9.04 -74.06 -0.67 15.26 16 28 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.43 5.25 8.59 -92.71 -0.80 4.46 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.24 0.23 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -69.24 344.91 -0.04 -69.27 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.31 Total: 17.93 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.69 Total: -10.15 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.03 Total: -89.98 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.86 Total: -33.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.55 Total: 1.20 kcal Total: -69.24 -0.04 -69.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287431587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.730 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds