Wall clock time and date at job start Tue Mar 31 2020 15:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48494 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47218 * 300.00250 * 3 2 1 6 6 H 1.48501 * 109.46759 * 60.00250 * 3 2 1 7 7 C 1.37878 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99663 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47146 * 299.99489 * 9 7 2 11 11 O 1.42895 * 109.47413 * 60.00230 * 9 7 2 12 12 C 1.53002 * 109.46746 * 180.02562 * 9 7 2 13 13 S 1.81401 * 109.47059 * 179.97438 * 12 9 7 14 14 C 1.76204 * 102.99916 * 179.97438 * 13 12 9 15 15 N 1.31342 * 125.48890 * 359.96100 * 14 13 12 16 16 N 1.40424 * 106.94009 * 179.80537 * 15 14 13 17 17 H 0.97001 * 126.80208 * 180.23795 * 16 15 14 18 18 C 1.35172 * 106.39275 * 0.37137 * 16 15 14 19 19 C 1.47969 * 126.02715 * 179.89784 * 18 16 15 20 20 C 1.39478 * 120.11641 * 359.70826 * 19 18 16 21 21 C 1.38223 * 119.88479 * 180.02562 * 20 19 18 22 22 F 1.35102 * 119.94087 * 180.25136 * 21 20 19 23 23 C 1.38525 * 120.11350 * 359.97438 * 21 20 19 24 24 C 1.38516 * 120.22948 * 0.02562 * 23 21 20 25 25 F 1.35107 * 119.94380 * 180.02562 * 24 23 21 26 26 C 1.38215 * 120.11758 * 0.02562 * 24 23 21 27 27 N 1.31804 * 107.94236 * 359.62568 * 18 16 15 28 28 H 0.97007 * 120.00641 * 359.97438 * 1 2 3 29 29 H 0.96699 * 114.00494 * 59.99552 * 11 9 7 30 30 H 1.08996 * 109.47220 * 59.99821 * 12 9 7 31 31 H 1.09001 * 109.47296 * 300.00126 * 12 9 7 32 32 H 1.08003 * 120.05718 * 359.97438 * 20 19 18 33 33 H 1.08003 * 119.88271 * 179.97438 * 23 21 20 34 34 H 1.08003 * 120.06194 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 16 1.3383 -5.2330 0.0002 14 6 2.6270 -6.4347 -0.0006 15 7 3.9140 -6.1725 -0.0023 16 7 4.5830 -7.4071 0.0022 17 1 5.5428 -7.5480 0.0054 18 6 3.6247 -8.3604 -0.0020 19 6 3.8516 -9.8226 -0.0018 20 6 5.1511 -10.3292 -0.0031 21 6 5.3575 -11.6959 -0.0034 22 9 6.6158 -12.1878 0.0005 23 6 4.2765 -12.5620 -0.0019 24 6 2.9839 -12.0641 -0.0007 25 9 1.9337 -12.9141 0.0013 26 6 2.7665 -10.6991 -0.0014 27 7 2.4525 -7.7577 -0.0004 28 1 -0.4851 0.8400 0.0004 29 1 0.9207 -2.5291 -1.9984 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 5.9946 -9.6547 -0.0047 33 1 4.4420 -13.6293 -0.0026 34 1 1.7583 -10.3119 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287455571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:24 Heat of formation + Delta-G solvation = -30.419760 kcal Electronic energy + Delta-G solvation = -23176.777774 eV Core-core repulsion = 19066.774196 eV Total energy + Delta-G solvation = -4110.003579 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.59896 -49.49945 -42.18316 -39.28397 -35.96236 -33.24409 -32.73530 -32.22366 -30.91252 -30.27072 -29.60349 -25.45357 -24.82119 -23.77331 -22.75195 -21.56573 -20.81708 -19.21899 -17.87790 -17.46369 -17.23322 -17.00847 -16.57785 -16.32467 -16.01039 -15.84070 -15.78990 -15.24907 -14.76123 -14.69326 -14.37545 -14.14878 -13.68545 -13.45572 -12.80844 -12.69569 -12.52030 -12.33266 -12.16052 -11.69621 -11.27868 -10.99103 -10.93413 -10.74376 -10.49883 -10.47435 -10.19170 -9.82712 -9.42346 -9.25058 -9.21721 -8.67483 -8.36117 -7.30068 -6.10799 -4.30740 -0.10513 0.32949 1.48122 1.49095 2.23001 2.46286 2.90307 2.99884 3.17410 3.22563 3.31174 3.34463 3.54032 3.78128 4.08658 4.24358 4.32479 4.35568 4.57392 4.84745 5.12319 5.16506 5.25245 5.36936 5.47251 5.66950 5.78001 5.96125 6.01435 6.07297 6.16682 6.60624 6.72019 7.51005 7.70640 7.72624 7.98969 8.70658 9.25271 9.45724 10.93257 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.002147 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.142874 B =13035.753528 C =13863.176289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.568 4.568 8 H 0.060 0.940 9 C 0.246 3.754 10 H 0.069 0.931 11 O -0.558 6.558 12 C -0.126 4.126 13 S 0.027 5.973 14 C 0.215 3.785 15 N -0.304 5.304 16 N -0.472 5.472 17 H 0.440 0.560 18 C 0.315 3.685 19 C 0.037 3.963 20 C -0.148 4.148 21 C 0.136 3.864 22 F -0.125 7.125 23 C -0.177 4.177 24 C 0.137 3.863 25 F -0.123 7.123 26 C -0.112 4.112 27 N -0.496 5.496 28 H 0.263 0.737 29 H 0.349 0.651 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -24.555 -0.197 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.608 4.608 8 H 0.078 0.922 9 C 0.186 3.814 10 H 0.086 0.914 11 O -0.360 6.360 12 C -0.275 4.275 13 S 0.255 5.745 14 C -0.174 4.174 15 N -0.138 5.138 16 N -0.192 5.192 17 H 0.286 0.714 18 C 0.038 3.962 19 C 0.034 3.966 20 C -0.169 4.169 21 C 0.116 3.884 22 F -0.104 7.104 23 C -0.197 4.197 24 C 0.117 3.883 25 F -0.101 7.101 26 C -0.133 4.133 27 N -0.225 5.225 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.789 -24.094 0.269 25.649 hybrid contribution 3.264 0.591 -0.332 3.334 sum 12.053 -23.503 -0.063 26.414 Atomic orbital electron populations 1.70082 1.05934 1.26704 1.46256 1.25035 0.94777 0.99228 0.93610 0.86521 0.80127 0.83385 0.77805 1.19655 1.20748 1.20744 1.21509 0.93285 0.90375 1.55663 0.92163 1.19227 0.87480 0.87612 0.87110 0.91377 1.86601 1.38088 1.96025 1.15312 1.25015 1.03762 0.93252 1.05491 1.86229 1.02502 0.94881 1.90840 1.26736 0.95552 0.95346 0.99743 1.78590 1.05616 1.00709 1.28850 1.47933 1.10004 1.03822 1.57442 0.71444 1.21870 0.85191 0.90545 0.98632 1.16941 0.92370 0.86825 1.00457 1.21061 0.97069 0.94336 1.04433 1.16874 0.79369 0.90890 1.01217 1.91575 1.37067 1.88125 1.93616 1.21213 0.90535 1.02064 1.05887 1.17047 0.83428 0.87122 1.00700 1.91588 1.55263 1.69772 1.93465 1.21349 1.01516 0.90492 0.99926 1.70761 1.23166 1.04482 1.24116 0.92751 0.80688 0.89498 0.90029 0.83875 0.82737 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.51 12.84 55.43 0.71 -23.80 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.57 -15.00 8.76 -34.44 -0.30 -15.30 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.25 5.99 2.87 -27.88 -0.08 5.91 16 10 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 11 O -0.56 -13.79 12.33 -35.23 -0.43 -14.23 16 12 C -0.13 -2.55 5.19 37.16 0.19 -2.35 16 13 S 0.03 0.50 21.81 -107.50 -2.34 -1.84 16 14 C 0.21 3.74 8.26 -91.10 -0.75 2.99 16 15 N -0.30 -4.96 12.34 30.10 0.37 -4.59 16 16 N -0.47 -5.57 7.33 32.24 0.24 -5.33 16 17 H 0.44 3.31 8.10 -182.35 -1.48 1.84 16 18 C 0.32 3.84 7.82 -155.49 -1.22 2.62 16 19 C 0.04 0.33 5.87 -104.98 -0.62 -0.29 16 20 C -0.15 -0.97 9.67 -39.12 -0.38 -1.35 16 21 C 0.14 0.88 7.29 -39.48 -0.29 0.60 16 22 F -0.13 -0.88 17.26 2.25 0.04 -0.84 16 23 C -0.18 -1.08 10.00 -39.37 -0.39 -1.48 16 24 C 0.14 1.02 7.29 -39.49 -0.29 0.73 16 25 F -0.12 -1.01 17.26 2.25 0.04 -0.97 16 26 C -0.11 -0.95 9.67 -39.12 -0.38 -1.33 16 27 N -0.50 -7.77 10.86 -11.47 -0.12 -7.89 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.35 7.63 9.04 45.56 0.41 8.05 16 30 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.08 1.62 8.14 -51.92 -0.42 1.19 16 32 H 0.14 0.61 7.19 -52.48 -0.38 0.23 16 33 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.16 1.48 7.85 -52.48 -0.41 1.07 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -31.48 331.70 -9.21 -40.69 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.09 Total: 5.40 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -4.60 Total: -7.16 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.19 Total: -41.61 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.43 Total: -14.23 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.08 Total: -1.80 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -2.34 Total: -1.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.48 -9.21 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287455571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.271 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds