Wall clock time and date at job start Tue Mar 31 2020 15:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48494 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47218 * 300.00250 * 3 2 1 6 6 H 1.48501 * 109.46759 * 60.00250 * 3 2 1 7 7 C 1.37878 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99663 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47146 * 299.99489 * 9 7 2 11 11 O 1.42895 * 109.47413 * 60.00230 * 9 7 2 12 12 C 1.53002 * 109.46746 * 180.02562 * 9 7 2 13 13 S 1.81401 * 109.47059 * 179.97438 * 12 9 7 14 14 C 1.76204 * 102.99916 * 179.97438 * 13 12 9 15 15 N 1.31342 * 125.48890 * 359.96100 * 14 13 12 16 16 N 1.40424 * 106.94009 * 179.80537 * 15 14 13 17 17 H 0.97001 * 126.80208 * 180.23795 * 16 15 14 18 18 C 1.35172 * 106.39275 * 0.37137 * 16 15 14 19 19 C 1.47969 * 126.02715 * 179.89784 * 18 16 15 20 20 C 1.39478 * 120.11641 * 359.70826 * 19 18 16 21 21 C 1.38223 * 119.88479 * 180.02562 * 20 19 18 22 22 F 1.35102 * 119.94087 * 180.25136 * 21 20 19 23 23 C 1.38525 * 120.11350 * 359.97438 * 21 20 19 24 24 C 1.38516 * 120.22948 * 0.02562 * 23 21 20 25 25 F 1.35107 * 119.94380 * 180.02562 * 24 23 21 26 26 C 1.38215 * 120.11758 * 0.02562 * 24 23 21 27 27 N 1.31804 * 107.94236 * 359.62568 * 18 16 15 28 28 H 0.97007 * 120.00641 * 359.97438 * 1 2 3 29 29 H 0.96699 * 114.00494 * 59.99552 * 11 9 7 30 30 H 1.08996 * 109.47220 * 59.99821 * 12 9 7 31 31 H 1.09001 * 109.47296 * 300.00126 * 12 9 7 32 32 H 1.08003 * 120.05718 * 359.97438 * 20 19 18 33 33 H 1.08003 * 119.88271 * 179.97438 * 23 21 20 34 34 H 1.08003 * 120.06194 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 16 1.3383 -5.2330 0.0002 14 6 2.6270 -6.4347 -0.0006 15 7 3.9140 -6.1725 -0.0023 16 7 4.5830 -7.4071 0.0022 17 1 5.5428 -7.5480 0.0054 18 6 3.6247 -8.3604 -0.0020 19 6 3.8516 -9.8226 -0.0018 20 6 5.1511 -10.3292 -0.0031 21 6 5.3575 -11.6959 -0.0034 22 9 6.6158 -12.1878 0.0005 23 6 4.2765 -12.5620 -0.0019 24 6 2.9839 -12.0641 -0.0007 25 9 1.9337 -12.9141 0.0013 26 6 2.7665 -10.6991 -0.0014 27 7 2.4525 -7.7577 -0.0004 28 1 -0.4851 0.8400 0.0004 29 1 0.9207 -2.5291 -1.9984 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 5.9946 -9.6547 -0.0047 33 1 4.4420 -13.6293 -0.0026 34 1 1.7583 -10.3119 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287455571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:24 Heat of formation + Delta-G solvation = -50.829565 kcal Electronic energy + Delta-G solvation = -23177.662810 eV Core-core repulsion = 19066.774196 eV Total energy + Delta-G solvation = -4110.888614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.12781 -50.10113 -43.28216 -39.91584 -37.90534 -34.28650 -34.16351 -33.74591 -31.70857 -31.52196 -30.90814 -27.39419 -25.64629 -24.68754 -23.67470 -22.97992 -22.12503 -20.07078 -19.26701 -18.64226 -18.12600 -17.64458 -17.45529 -17.20820 -16.86073 -16.70294 -16.69402 -16.40588 -16.33481 -16.11780 -15.89827 -15.38880 -15.25612 -14.23281 -14.10507 -13.61098 -13.44440 -13.37302 -13.23599 -13.13573 -12.86543 -12.79866 -12.75169 -12.05808 -11.89474 -11.76725 -11.47255 -11.37168 -11.05074 -10.72327 -10.32069 -10.04575 -9.98161 -8.74594 -8.16061 -6.42839 -0.79044 -0.23906 0.10112 0.47579 1.09013 1.42133 1.44047 1.44770 1.55726 1.61586 2.25708 2.39971 2.49579 2.85168 3.10637 3.11978 3.50871 3.61425 3.72788 3.79370 4.08208 4.15705 4.20238 4.28848 4.49408 4.56859 4.73292 4.76157 4.87705 4.88742 4.92698 5.49072 5.51853 5.65927 5.88182 5.97022 6.59778 6.66400 7.29722 7.47717 8.88759 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.002147 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.142874 B =13035.753528 C =13863.176289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.580 4.580 8 H 0.064 0.936 9 C 0.247 3.753 10 H 0.036 0.964 11 O -0.571 6.571 12 C -0.107 4.107 13 S 0.015 5.985 14 C 0.202 3.798 15 N -0.325 5.325 16 N -0.455 5.455 17 H 0.459 0.541 18 C 0.334 3.666 19 C 0.020 3.980 20 C -0.128 4.128 21 C 0.135 3.865 22 F -0.124 7.124 23 C -0.156 4.156 24 C 0.130 3.870 25 F -0.128 7.128 26 C -0.114 4.114 27 N -0.525 5.525 28 H 0.264 0.736 29 H 0.360 0.640 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.211 -26.120 -0.392 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.620 4.620 8 H 0.082 0.918 9 C 0.187 3.813 10 H 0.054 0.946 11 O -0.375 6.375 12 C -0.257 4.257 13 S 0.244 5.756 14 C -0.187 4.187 15 N -0.159 5.159 16 N -0.177 5.177 17 H 0.309 0.691 18 C 0.056 3.944 19 C 0.017 3.983 20 C -0.149 4.149 21 C 0.115 3.885 22 F -0.103 7.103 23 C -0.177 4.177 24 C 0.111 3.889 25 F -0.107 7.107 26 C -0.135 4.135 27 N -0.255 5.255 28 H 0.073 0.927 29 H 0.206 0.794 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.186 0.814 33 H 0.195 0.805 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.384 -25.674 0.071 28.085 hybrid contribution 2.561 0.815 -0.274 2.702 sum 13.945 -24.859 -0.203 28.504 Atomic orbital electron populations 1.70211 1.07617 1.27636 1.47728 1.25892 0.95530 1.02886 0.93183 0.85436 0.79052 0.78881 0.77754 1.18737 1.20408 1.20453 1.21868 0.93628 0.91501 1.54969 0.91756 1.18973 0.87387 0.88961 0.85948 0.94582 1.86543 1.38824 1.96169 1.15984 1.24521 1.02425 0.93116 1.05611 1.86112 1.03185 0.94594 1.91734 1.26346 0.95425 0.95691 1.01249 1.78469 1.05360 1.02977 1.29142 1.47787 1.10986 1.02427 1.56480 0.69054 1.22260 0.84169 0.91728 0.96203 1.16806 0.93467 0.84799 1.03251 1.21236 0.96703 0.94928 1.02066 1.16838 0.79426 0.90816 1.01372 1.91590 1.36994 1.88071 1.93623 1.21436 0.89650 1.03319 1.03259 1.17001 0.83848 0.86543 1.01546 1.91578 1.55686 1.69791 1.93627 1.21306 1.01125 0.91183 0.99902 1.70693 1.25198 1.03819 1.25806 0.92708 0.79424 0.89545 0.89592 0.81360 0.80469 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.31 12.84 21.45 0.28 -52.03 16 2 C 0.03 1.55 5.40 84.66 0.46 2.01 16 3 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.58 -30.89 8.76 25.60 0.22 -30.67 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.25 12.37 2.87 29.85 0.09 12.46 16 10 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 11 O -0.57 -28.94 12.33 -148.98 -1.84 -30.78 16 12 C -0.11 -4.41 5.19 71.98 0.37 -4.04 16 13 S 0.02 0.59 21.81 -56.49 -1.23 -0.64 16 14 C 0.20 7.04 8.26 180.52 1.49 8.53 16 15 N -0.32 -10.32 12.34 -58.67 -0.72 -11.05 16 16 N -0.46 -9.86 7.33 -51.92 -0.38 -10.24 16 17 H 0.46 5.62 8.10 -213.11 -1.73 3.90 16 18 C 0.33 7.65 7.82 136.87 1.07 8.72 16 19 C 0.02 0.31 5.87 -20.10 -0.12 0.19 16 20 C -0.13 -1.26 9.67 22.57 0.22 -1.05 16 21 C 0.14 1.30 7.29 22.33 0.16 1.46 16 22 F -0.12 -1.30 17.26 44.97 0.78 -0.52 16 23 C -0.16 -1.44 10.00 22.40 0.22 -1.21 16 24 C 0.13 1.69 7.29 22.33 0.16 1.86 16 25 F -0.13 -1.94 17.26 44.97 0.78 -1.16 16 26 C -0.11 -1.81 9.67 22.57 0.22 -1.59 16 27 N -0.52 -16.30 10.86 -190.19 -2.07 -18.37 16 28 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.36 16.05 9.04 -74.06 -0.67 15.38 16 30 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 32 H 0.17 0.74 7.19 -2.91 -0.02 0.72 16 33 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.15 2.76 7.85 -2.91 -0.02 2.73 16 Total: -1.00 -68.30 331.70 0.99 -67.31 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -1.19 Total: 16.49 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 4.57 Total: -3.33 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.90 Total: -91.69 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.84 Total: -30.78 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 1.55 Total: -1.68 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.23 Total: -0.64 kcal Total: -68.30 0.99 -67.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287455571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.481 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds