Wall clock time and date at job start Tue Mar 31 2020 15:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00158 * 2 1 4 4 H 1.48507 * 109.47530 * 239.99768 * 3 2 1 5 5 H 1.48500 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47425 * 119.99632 * 3 2 1 7 7 C 1.37883 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99885 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.46931 * 179.97438 * 9 7 2 11 11 O 1.42104 * 110.54086 * 68.37710 * 10 9 7 12 12 O 1.42098 * 110.54133 * 291.62283 * 10 9 7 13 13 O 1.52206 * 104.44659 * 179.97438 * 10 9 7 14 14 C 1.35971 * 113.99710 * 75.00343 * 13 10 9 15 15 C 1.38717 * 119.98708 * 269.71651 * 14 13 10 16 16 C 1.38097 * 120.01635 * 179.76553 * 15 14 13 17 17 C 1.38837 * 119.98261 * 0.53909 * 16 15 14 18 18 N 1.40149 * 120.01412 * 179.69619 * 17 16 15 19 19 C 1.47097 * 125.55583 * 359.74145 * 18 17 16 20 20 C 1.54090 * 103.77597 * 179.87046 * 19 18 17 21 21 O 1.45695 * 104.01450 * 0.37516 * 20 19 18 22 22 C 1.33792 * 109.47321 * 359.75276 * 21 20 19 23 23 O 1.21516 * 123.07630 * 179.97438 * 22 21 20 24 24 C 1.38835 * 119.97190 * 359.72063 * 17 16 15 25 25 C 1.38094 * 119.98822 * 359.97438 * 24 17 16 26 26 H 0.96999 * 120.00168 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47038 * 60.00024 * 9 7 2 28 28 H 1.09000 * 109.47400 * 299.99763 * 9 7 2 29 29 H 1.08001 * 119.98918 * 0.02785 * 15 14 13 30 30 H 1.07998 * 120.00993 * 180.23233 * 16 15 14 31 31 H 1.08998 * 110.56740 * 298.57043 * 19 18 17 32 32 H 1.08996 * 110.56455 * 61.42915 * 19 18 17 33 33 H 1.09001 * 110.72865 * 241.64029 * 20 19 18 34 34 H 1.09004 * 110.43114 * 118.96339 * 20 19 18 35 35 H 1.07998 * 120.00278 * 179.97438 * 24 17 16 36 36 H 1.07996 * 119.99695 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8780 0.0005 11 8 3.1266 -3.9383 1.2376 12 8 3.1266 -3.9383 -1.2365 13 8 1.5564 -5.1244 0.0012 14 6 0.9754 -5.3931 -1.1984 15 6 -0.2738 -4.8688 -1.4967 16 6 -0.8623 -5.1373 -2.7168 17 6 -0.2084 -5.9415 -3.6405 18 7 -0.8078 -6.2197 -4.8764 19 6 -2.1227 -5.7306 -5.3187 20 6 -2.2799 -6.3266 -6.7309 21 8 -1.0543 -7.0886 -6.9307 22 6 -0.2792 -6.9793 -5.8456 23 8 0.8047 -7.5197 -5.7477 24 6 1.0394 -6.4704 -3.3392 25 6 1.6296 -6.1959 -2.1213 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 -0.7843 -4.2469 -0.7763 30 1 -1.8332 -4.7260 -2.9504 31 1 -2.9090 -6.0949 -4.6576 32 1 -2.1314 -4.6415 -5.3618 33 1 -2.3639 -5.5358 -7.4763 34 1 -3.1491 -6.9832 -6.7722 35 1 1.5484 -7.0963 -4.0572 36 1 2.6005 -6.6069 -1.8870 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289079768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:56 Heat of formation + Delta-G solvation = -135.612430 kcal Electronic energy + Delta-G solvation = -25623.922383 eV Core-core repulsion = 21588.152073 eV Total energy + Delta-G solvation = -4035.770311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24964 -40.60181 -38.40739 -37.54400 -36.29676 -35.44792 -35.18189 -33.43730 -31.29281 -30.75084 -29.22381 -28.90097 -24.76333 -24.25993 -23.62132 -22.39425 -21.56633 -20.18469 -18.49136 -17.86855 -17.83303 -17.36980 -17.27331 -16.68216 -16.26389 -15.57940 -15.21383 -15.00832 -14.60668 -14.52830 -14.34723 -14.32698 -14.14005 -13.64216 -13.07522 -12.84004 -12.78886 -12.57719 -12.54338 -12.17610 -11.85019 -11.53114 -11.32613 -11.30032 -11.24026 -11.16995 -10.93386 -10.68657 -10.45907 -10.41481 -9.92177 -9.26045 -9.11210 -8.76099 -8.13578 -6.39892 -4.50230 0.67263 1.23219 1.41973 1.87223 2.37491 2.92827 2.95371 3.20456 3.22524 3.27890 3.58383 3.59164 4.10588 4.17621 4.18259 4.54800 4.69456 4.74410 4.76262 4.79381 4.94873 4.97549 5.01983 5.08441 5.28902 5.43785 5.50393 5.92038 6.10668 6.20400 6.23098 6.34186 6.55991 6.63717 6.87167 6.94185 7.37577 7.56847 7.67338 8.50802 9.17641 10.72091 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.003670 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.839788 B = 7627.098568 C = 8704.574809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.071 0.929 9 C -0.441 4.441 10 S 2.562 3.438 11 O -0.951 6.951 12 O -0.972 6.972 13 O -0.679 6.679 14 C 0.065 3.935 15 C -0.093 4.093 16 C -0.135 4.135 17 C 0.183 3.817 18 N -0.568 5.568 19 C 0.056 3.944 20 C 0.042 3.958 21 O -0.321 6.321 22 C 0.645 3.355 23 O -0.499 6.499 24 C -0.138 4.138 25 C -0.064 4.064 26 H 0.269 0.731 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 -10.887 -11.335 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.089 0.911 9 C -0.574 4.574 10 S 2.664 3.336 11 O -0.950 6.950 12 O -0.970 6.970 13 O -0.637 6.637 14 C 0.022 3.978 15 C -0.113 4.113 16 C -0.156 4.156 17 C 0.090 3.910 18 N -0.305 5.305 19 C -0.066 4.066 20 C -0.033 4.033 21 O -0.231 6.231 22 C 0.400 3.600 23 O -0.382 6.382 24 C -0.158 4.158 25 C -0.084 4.084 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.171 0.829 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.184 0.816 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.886 -11.748 -11.385 19.115 hybrid contribution -0.294 1.585 0.248 1.631 sum -10.180 -10.163 -11.137 18.192 Atomic orbital electron populations 1.69926 1.06251 1.27839 1.47492 1.24910 0.95039 0.99599 0.93303 0.86419 0.79667 0.81283 0.79558 1.19389 1.20685 1.19334 1.20234 0.92750 0.88438 1.55763 0.91134 1.27992 1.10950 1.11454 1.07031 1.06444 0.77155 0.75813 0.74169 1.93520 1.70823 1.85290 1.45321 1.93533 1.72732 1.84933 1.45850 1.85764 1.72536 1.65221 1.40209 1.18004 0.94094 1.03222 0.82461 1.21255 0.93649 0.99087 0.97339 1.20489 1.01357 1.00889 0.92823 1.17462 0.93114 0.97564 0.82814 1.45389 1.19802 1.49910 1.15388 1.23056 0.85384 1.02479 0.95722 1.24375 0.86078 0.96399 0.96404 1.87337 1.31204 1.67591 1.36946 1.18437 0.84012 0.78768 0.78784 1.90968 1.17783 1.50418 1.79048 1.21419 0.94038 1.02525 0.97840 1.21186 0.99866 0.95537 0.91814 0.92137 0.89371 0.89223 0.82927 0.84232 0.87778 0.87597 0.86945 0.87067 0.81620 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.90 13.29 55.43 0.74 -23.17 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.53 -14.48 9.13 -34.44 -0.31 -14.79 16 8 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 9 C -0.44 -10.49 5.23 36.00 0.19 -10.30 16 10 S 2.56 57.14 5.09 -107.50 -0.55 56.59 16 11 O -0.95 -23.76 18.09 -67.04 -1.21 -24.97 16 12 O -0.97 -22.89 16.26 -67.03 -1.09 -23.98 16 13 O -0.68 -13.13 10.05 -51.97 -0.52 -13.65 16 14 C 0.06 1.13 4.80 -39.23 -0.19 0.94 16 15 C -0.09 -1.37 8.46 -39.46 -0.33 -1.71 16 16 C -0.13 -1.63 9.49 -39.41 -0.37 -2.00 16 17 C 0.18 2.38 6.64 -83.61 -0.55 1.83 16 18 N -0.57 -6.00 3.17 -118.22 -0.37 -6.38 16 19 C 0.06 0.29 6.49 -3.15 -0.02 0.27 16 20 C 0.04 0.17 8.23 37.73 0.31 0.48 16 21 O -0.32 -3.13 11.09 -37.88 -0.42 -3.55 16 22 C 0.65 8.07 8.77 53.71 0.47 8.54 16 23 O -0.50 -7.99 14.75 -19.12 -0.28 -8.27 16 24 C -0.14 -2.06 9.31 -39.41 -0.37 -2.43 16 25 C -0.06 -1.03 9.04 -39.46 -0.36 -1.39 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.09 2.00 6.62 -51.92 -0.34 1.66 16 28 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 29 H 0.15 2.08 7.52 -52.49 -0.39 1.69 16 30 H 0.14 1.17 7.30 -52.49 -0.38 0.79 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.17 2.52 5.24 -52.49 -0.27 2.24 16 36 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -36.42 325.14 -8.94 -45.36 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.47 Total: 0.17 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.64 Total: -18.58 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.36 Total: -29.54 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: -3.53 Total: -74.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.55 Total: 56.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.42 -8.94 -45.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289079768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.252 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds