Wall clock time and date at job start Tue Mar 31 2020 15:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99594 * 2 1 4 4 H 1.48498 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46961 * 299.99787 * 3 2 1 6 6 H 1.48499 * 109.47083 * 59.99565 * 3 2 1 7 7 C 1.37871 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46767 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99775 * 5.38940 * 11 10 9 13 13 N 1.34774 * 119.99622 * 185.39134 * 11 10 9 14 14 C 1.46928 * 120.56247 * 325.27845 * 13 11 10 15 15 C 1.53429 * 107.78078 * 224.65943 * 14 13 11 16 16 C 1.53244 * 108.58670 * 296.48364 * 15 14 13 17 17 C 1.50590 * 110.37744 * 51.91768 * 16 15 14 18 18 C 1.38537 * 118.92015 * 158.73544 * 17 16 15 19 19 C 1.38221 * 120.31531 * 179.57825 * 18 17 16 20 20 Cl 1.73598 * 119.92569 * 179.97438 * 19 18 17 21 21 C 1.38396 * 120.13976 * 0.02562 * 19 18 17 22 22 C 1.38128 * 119.87478 * 0.09408 * 21 19 18 23 23 Cl 1.73603 * 119.98452 * 179.97438 * 22 21 19 24 24 C 1.38535 * 121.49992 * 338.77829 * 17 16 15 25 25 H 0.96994 * 120.00809 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46706 * 60.00401 * 9 7 2 27 27 H 1.08999 * 109.47000 * 300.00331 * 9 7 2 28 28 H 1.08990 * 109.47216 * 60.00344 * 10 9 7 29 29 H 1.09002 * 109.46707 * 299.99779 * 10 9 7 30 30 H 1.09001 * 109.79961 * 344.23514 * 14 13 11 31 31 H 1.09005 * 109.79398 * 105.03735 * 14 13 11 32 32 H 1.09006 * 109.56874 * 56.62373 * 15 14 13 33 33 H 1.09004 * 109.57017 * 176.86309 * 15 14 13 34 34 H 1.09005 * 109.87812 * 291.34995 * 16 15 14 35 35 H 1.08999 * 108.79739 * 171.80352 * 16 15 14 36 36 H 1.07994 * 119.84279 * 359.59863 * 18 17 16 37 37 H 1.07998 * 120.06787 * 180.11290 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2456 -3.6619 0.0027 11 6 1.4921 -4.9672 0.0033 12 8 0.2833 -4.9696 -0.0958 13 7 2.1616 -6.1316 0.1139 14 6 3.4901 -6.2902 -0.4934 15 6 3.5220 -7.6506 -1.2021 16 6 3.3537 -8.7530 -0.1510 17 6 2.1424 -8.4835 0.7021 18 6 1.5599 -9.5356 1.3900 19 6 0.4525 -9.3193 2.1882 20 17 -0.2697 -10.6451 3.0452 21 6 -0.0825 -8.0482 2.3049 22 6 0.4913 -6.9948 1.6201 23 17 -0.1778 -5.3993 1.7638 24 6 1.6020 -7.2126 0.8111 25 1 -0.4851 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8881 27 1 0.6249 -2.5563 0.8919 28 1 2.8722 -3.6034 0.8926 29 1 2.8722 -3.6049 -0.8874 30 1 3.6632 -5.4930 -1.2164 31 1 4.2563 -6.2585 0.2814 32 1 2.7117 -7.7025 -1.9293 33 1 4.4779 -7.7748 -1.7111 34 1 4.2383 -8.7975 0.4843 35 1 3.2293 -9.7083 -0.6609 36 1 1.9734 -10.5294 1.3024 37 1 -0.9467 -7.8802 2.9303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291756382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:08 Heat of formation + Delta-G solvation = 9.653342 kcal Electronic energy + Delta-G solvation = -23245.099116 eV Core-core repulsion = 19654.293461 eV Total energy + Delta-G solvation = -3590.805656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05906 -38.81018 -37.13862 -36.60258 -35.67554 -33.64078 -33.55548 -31.26442 -30.60806 -29.68069 -26.34188 -25.39064 -23.56536 -23.39959 -21.52225 -20.34422 -18.99951 -17.53053 -17.23064 -16.79907 -16.19989 -15.61964 -15.23580 -15.01431 -14.74578 -14.44790 -14.03870 -13.76772 -13.54660 -13.49497 -13.31116 -12.90239 -12.50994 -12.26301 -12.19923 -11.68548 -11.50326 -11.29741 -11.22917 -11.00407 -10.93337 -10.75993 -10.62056 -10.31720 -10.01544 -9.75915 -9.44359 -9.10956 -8.97802 -8.37235 -8.22164 -7.56220 -6.00307 -4.04594 0.94354 1.01099 1.89005 2.34968 2.91444 2.97257 3.29959 3.37426 3.38960 3.40518 4.29449 4.44051 4.53697 4.72234 4.75108 4.85810 4.94339 5.03660 5.32140 5.35129 5.40443 5.42625 5.46098 5.59171 5.63530 5.70621 5.88846 5.96968 6.04745 6.15883 6.21576 6.29235 6.77642 6.86319 7.46294 7.68726 7.79041 8.00661 8.28050 8.43578 9.03142 9.59409 11.10628 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003429 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.629112 B = 8164.156721 C = 9260.740292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.117 4.117 11 C 0.444 3.556 12 O -0.434 6.434 13 N -0.570 5.570 14 C 0.110 3.890 15 C -0.137 4.137 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.078 4.078 19 C -0.064 4.064 20 Cl -0.072 7.072 21 C -0.073 4.073 22 C -0.087 4.087 23 Cl 0.033 6.967 24 C 0.204 3.796 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -21.808 2.063 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.156 4.156 11 C 0.235 3.765 12 O -0.304 6.304 13 N -0.292 5.292 14 C -0.011 4.011 15 C -0.175 4.175 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.097 4.097 19 C -0.092 4.092 20 Cl -0.044 7.044 21 C -0.093 4.093 22 C -0.118 4.118 23 Cl 0.064 6.936 24 C 0.103 3.897 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.942 -21.464 2.009 22.362 hybrid contribution 0.226 0.898 0.230 0.954 sum 6.168 -20.566 2.239 21.588 Atomic orbital electron populations 1.69993 1.06054 1.26527 1.50261 1.25016 0.94817 0.99240 0.95257 0.86546 0.80044 0.83837 0.77614 1.19706 1.20998 1.21008 1.21228 0.92978 0.90897 1.51294 0.92529 1.18908 0.93187 0.89512 0.98351 1.21799 1.00520 0.91082 1.02245 1.21363 0.87730 0.84929 0.82434 1.90886 1.15986 1.88060 1.35456 1.45791 1.19159 1.11038 1.53229 1.21895 0.82966 0.98580 0.97709 1.21976 1.03516 0.94024 0.97983 1.20433 0.94814 0.99528 0.96060 1.19225 1.00210 0.90182 1.02027 1.20754 0.94258 0.99176 0.95541 1.20410 0.98508 0.88685 1.01631 1.98354 1.83045 1.46673 1.76296 1.20729 0.99989 0.89611 0.98948 1.20747 0.98030 0.90074 1.02957 1.98506 1.85390 1.18532 1.91146 1.17347 0.92741 0.87909 0.91705 0.92987 0.95758 0.96178 0.90570 0.90296 0.88542 0.90648 0.90681 0.89471 0.89955 0.90042 0.84518 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.99 4.28 -27.88 -0.12 0.87 16 10 C -0.12 -2.32 4.92 -27.88 -0.14 -2.46 16 11 C 0.44 8.37 5.48 -10.98 -0.06 8.31 16 12 O -0.43 -9.48 11.24 5.55 0.06 -9.42 16 13 N -0.57 -8.55 2.97 -112.80 -0.33 -8.89 16 14 C 0.11 1.17 6.04 -3.59 -0.02 1.15 16 15 C -0.14 -1.13 6.14 -26.38 -0.16 -1.29 16 16 C -0.07 -0.56 5.79 -27.81 -0.16 -0.73 16 17 C -0.11 -1.27 5.75 -104.46 -0.60 -1.87 16 18 C -0.08 -0.81 9.44 -39.48 -0.37 -1.18 16 19 C -0.06 -0.75 6.31 -39.53 -0.25 -1.00 16 20 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 21 C -0.07 -0.97 9.61 -39.56 -0.38 -1.35 16 22 C -0.09 -1.36 6.10 -39.29 -0.24 -1.60 16 23 Cl 0.03 0.62 22.17 -51.86 -1.15 -0.53 16 24 C 0.20 2.97 6.25 -83.55 -0.52 2.45 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.69 8.04 -51.93 -0.42 0.28 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.42 7.24 -51.93 -0.38 1.04 16 30 H 0.10 0.98 6.87 -51.93 -0.36 0.62 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.53 331.45 -10.15 -42.67 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.50 Total: -4.60 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.44 Total: -12.09 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.40 Total: -35.21 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -2.65 Total: -2.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.53 -10.15 -42.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291756382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.326 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds