Wall clock time and date at job start Tue Mar 31 2020 15:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99594 * 2 1 4 4 H 1.48498 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46961 * 299.99787 * 3 2 1 6 6 H 1.48499 * 109.47083 * 59.99565 * 3 2 1 7 7 C 1.37871 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46767 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99775 * 5.38940 * 11 10 9 13 13 N 1.34774 * 119.99622 * 185.39134 * 11 10 9 14 14 C 1.46928 * 120.56247 * 325.27845 * 13 11 10 15 15 C 1.53429 * 107.78078 * 224.65943 * 14 13 11 16 16 C 1.53244 * 108.58670 * 296.48364 * 15 14 13 17 17 C 1.50590 * 110.37744 * 51.91768 * 16 15 14 18 18 C 1.38537 * 118.92015 * 158.73544 * 17 16 15 19 19 C 1.38221 * 120.31531 * 179.57825 * 18 17 16 20 20 Cl 1.73598 * 119.92569 * 179.97438 * 19 18 17 21 21 C 1.38396 * 120.13976 * 0.02562 * 19 18 17 22 22 C 1.38128 * 119.87478 * 0.09408 * 21 19 18 23 23 Cl 1.73603 * 119.98452 * 179.97438 * 22 21 19 24 24 C 1.38535 * 121.49992 * 338.77829 * 17 16 15 25 25 H 0.96994 * 120.00809 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46706 * 60.00401 * 9 7 2 27 27 H 1.08999 * 109.47000 * 300.00331 * 9 7 2 28 28 H 1.08990 * 109.47216 * 60.00344 * 10 9 7 29 29 H 1.09002 * 109.46707 * 299.99779 * 10 9 7 30 30 H 1.09001 * 109.79961 * 344.23514 * 14 13 11 31 31 H 1.09005 * 109.79398 * 105.03735 * 14 13 11 32 32 H 1.09006 * 109.56874 * 56.62373 * 15 14 13 33 33 H 1.09004 * 109.57017 * 176.86309 * 15 14 13 34 34 H 1.09005 * 109.87812 * 291.34995 * 16 15 14 35 35 H 1.08999 * 108.79739 * 171.80352 * 16 15 14 36 36 H 1.07994 * 119.84279 * 359.59863 * 18 17 16 37 37 H 1.07998 * 120.06787 * 180.11290 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2456 -3.6619 0.0027 11 6 1.4921 -4.9672 0.0033 12 8 0.2833 -4.9696 -0.0958 13 7 2.1616 -6.1316 0.1139 14 6 3.4901 -6.2902 -0.4934 15 6 3.5220 -7.6506 -1.2021 16 6 3.3537 -8.7530 -0.1510 17 6 2.1424 -8.4835 0.7021 18 6 1.5599 -9.5356 1.3900 19 6 0.4525 -9.3193 2.1882 20 17 -0.2697 -10.6451 3.0452 21 6 -0.0825 -8.0482 2.3049 22 6 0.4913 -6.9948 1.6201 23 17 -0.1778 -5.3993 1.7638 24 6 1.6020 -7.2126 0.8111 25 1 -0.4851 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8881 27 1 0.6249 -2.5563 0.8919 28 1 2.8722 -3.6034 0.8926 29 1 2.8722 -3.6049 -0.8874 30 1 3.6632 -5.4930 -1.2164 31 1 4.2563 -6.2585 0.2814 32 1 2.7117 -7.7025 -1.9293 33 1 4.4779 -7.7748 -1.7111 34 1 4.2383 -8.7975 0.4843 35 1 3.2293 -9.7083 -0.6609 36 1 1.9734 -10.5294 1.3024 37 1 -0.9467 -7.8802 2.9303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291756382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:07 Heat of formation + Delta-G solvation = -8.386207 kcal Electronic energy + Delta-G solvation = -23245.881370 eV Core-core repulsion = 19654.293461 eV Total energy + Delta-G solvation = -3591.587909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17274 -40.03244 -38.15103 -37.70970 -36.71870 -35.61718 -34.59014 -33.09643 -31.56363 -30.79347 -27.96278 -26.58159 -24.74362 -24.43106 -23.12400 -21.38993 -20.18849 -18.99711 -18.38061 -18.24888 -17.62236 -16.91484 -16.51565 -16.28854 -16.07264 -15.76152 -15.06206 -14.81094 -14.67373 -14.59116 -14.39936 -14.22384 -14.11772 -13.40375 -13.25320 -13.13247 -12.91313 -12.66925 -12.46865 -12.31784 -12.14787 -12.01384 -11.77493 -11.67166 -11.59614 -11.34426 -11.12740 -10.91758 -10.57924 -10.01714 -9.46405 -8.70599 -8.19335 -6.32796 -0.02373 -0.01155 0.88248 1.23830 1.40826 1.41751 1.55034 1.58522 1.87363 2.39764 2.41639 3.14057 3.40853 3.77839 3.85609 3.93025 3.97983 4.05134 4.13401 4.32646 4.47383 4.49839 4.56432 4.66014 4.69133 4.81024 4.91690 4.98231 5.04803 5.10556 5.18013 5.32232 5.40340 5.48360 5.62439 5.78098 5.84136 6.16886 6.24997 6.84725 7.01291 7.37337 8.93092 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003429 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.629112 B = 8164.156721 C = 9260.740292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.449 3.551 12 O -0.477 6.477 13 N -0.569 5.569 14 C 0.097 3.903 15 C -0.130 4.130 16 C -0.070 4.070 17 C -0.101 4.101 18 C -0.068 4.068 19 C -0.061 4.061 20 Cl -0.057 7.057 21 C -0.086 4.086 22 C -0.110 4.110 23 Cl -0.010 7.010 24 C 0.178 3.822 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.017 1.017 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.174 0.826 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 -24.124 1.706 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.010 3.990 10 C -0.145 4.145 11 C 0.241 3.759 12 O -0.350 6.350 13 N -0.292 5.292 14 C -0.023 4.023 15 C -0.168 4.168 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.087 4.087 19 C -0.090 4.090 20 Cl -0.028 7.028 21 C -0.105 4.105 22 C -0.141 4.141 23 Cl 0.021 6.979 24 C 0.078 3.922 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.192 0.808 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.536 -23.832 1.658 25.723 hybrid contribution -0.889 1.425 0.381 1.723 sum 8.647 -22.407 2.039 24.104 Atomic orbital electron populations 1.70170 1.08226 1.27658 1.51615 1.26089 0.95688 1.03790 0.94697 0.85322 0.79415 0.78299 0.77523 1.17561 1.20595 1.20778 1.21721 0.93926 0.91641 1.50542 0.90816 1.18651 0.93553 0.92142 0.94658 1.21537 0.99161 0.89872 1.03897 1.21032 0.87097 0.85939 0.81880 1.90889 1.17586 1.88688 1.37830 1.45661 1.20390 1.09908 1.53235 1.22321 0.81094 1.00464 0.98456 1.21988 1.04763 0.92422 0.97617 1.20621 0.93790 1.00435 0.95856 1.19714 1.00730 0.88553 1.01437 1.21183 0.93125 1.00539 0.93873 1.20563 0.98647 0.88316 1.01436 1.98363 1.82944 1.45542 1.75996 1.20785 1.00423 0.90086 0.99238 1.20984 0.99344 0.88766 1.05007 1.98489 1.86033 1.21763 1.91654 1.17677 0.93158 0.89101 0.92215 0.92939 0.99799 0.99841 0.89319 0.87987 0.88440 0.88646 0.92437 0.85878 0.87383 0.87352 0.80843 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.29 21.44 0.28 -59.07 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 4 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.05 2.63 4.28 29.85 0.13 2.75 16 10 C -0.10 -4.27 4.92 29.85 0.15 -4.13 16 11 C 0.45 17.58 5.48 87.66 0.48 18.06 16 12 O -0.48 -22.37 11.24 -3.05 -0.03 -22.40 16 13 N -0.57 -16.83 2.97 -629.18 -1.87 -18.70 16 14 C 0.10 1.81 6.04 86.44 0.52 2.34 16 15 C -0.13 -1.64 6.14 30.82 0.19 -1.45 16 16 C -0.07 -0.76 5.79 29.90 0.17 -0.59 16 17 C -0.10 -1.96 5.75 -19.76 -0.11 -2.08 16 18 C -0.07 -1.18 9.44 22.34 0.21 -0.97 16 19 C -0.06 -1.32 6.31 22.30 0.14 -1.18 16 20 Cl -0.06 -1.07 28.95 -2.72 -0.08 -1.14 16 21 C -0.09 -2.30 9.61 22.28 0.21 -2.09 16 22 C -0.11 -3.57 6.10 22.46 0.14 -3.43 16 23 Cl -0.01 -0.41 22.17 -2.72 -0.06 -0.47 16 24 C 0.18 5.07 6.25 38.07 0.24 5.31 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H -0.02 -1.03 8.04 -2.39 -0.02 -1.04 16 27 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.10 3.62 7.24 -2.39 -0.02 3.60 16 30 H 0.10 1.78 6.87 -2.39 -0.02 1.76 16 31 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.11 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -76.44 331.45 4.52 -71.92 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.09 Total: 1.23 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.16 Total: -17.76 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.58 Total: -77.77 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.03 Total: -22.40 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.14 Total: -1.61 kcal Total: -76.44 4.52 -71.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291756382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.535 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds