Wall clock time and date at job start Tue Mar 31 2020 15:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47203 * 239.99804 * 3 2 1 5 5 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47100 * 119.99515 * 3 2 1 7 7 C 1.37881 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00081 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99770 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00192 * 185.14314 * 13 11 10 15 15 C 1.50708 * 115.54416 * 39.95422 * 14 13 11 16 16 C 1.38332 * 120.01203 * 259.57229 * 15 14 13 17 17 Cl 1.73598 * 120.00590 * 0.02562 * 16 15 14 18 18 C 1.38353 * 119.98636 * 179.70392 * 16 15 14 19 19 C 1.38223 * 120.01461 * 0.59584 * 18 16 15 20 20 C 1.38222 * 120.02339 * 359.68227 * 19 18 16 21 21 C 1.38330 * 120.01477 * 79.85430 * 15 14 13 22 22 Cl 1.73603 * 120.00514 * 359.97044 * 21 15 14 23 23 C 1.52999 * 117.50158 * 185.62063 * 14 13 11 24 24 C 1.53002 * 60.03018 * 107.50633 * 23 14 13 25 25 H 0.97001 * 119.99097 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47638 * 59.99442 * 9 7 2 27 27 H 1.09001 * 109.46725 * 299.99423 * 9 7 2 28 28 H 1.08996 * 109.47058 * 59.99325 * 10 9 7 29 29 H 1.09004 * 109.46820 * 300.00022 * 10 9 7 30 30 H 0.97005 * 120.00581 * 5.14162 * 13 11 10 31 31 H 1.08008 * 119.99709 * 180.27575 * 18 16 15 32 32 H 1.07997 * 119.99008 * 179.70051 * 19 18 16 33 33 H 1.08002 * 119.99661 * 180.02562 * 20 19 18 34 34 H 1.09000 * 117.49722 * 214.99731 * 23 14 13 35 35 H 1.08995 * 117.50210 * 0.02562 * 23 14 13 36 36 H 1.08996 * 117.50334 * 107.50047 * 24 23 14 37 37 H 1.09004 * 117.49572 * 252.52872 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1653 -6.1344 0.0008 14 6 1.4371 -7.4006 -0.1124 15 6 0.2804 -7.4010 -1.0784 16 6 -1.0140 -7.2702 -0.6080 17 17 -1.3061 -7.1049 1.0952 18 6 -2.0750 -7.2645 -1.4958 19 6 -1.8430 -7.4017 -2.8515 20 6 -0.5504 -7.5382 -3.3216 21 6 0.5120 -7.5380 -2.4352 22 17 2.1355 -7.7087 -3.0259 23 6 2.2430 -8.6938 0.0252 24 6 1.3039 -8.2551 1.1506 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8904 29 1 2.8717 -3.6045 -0.8895 30 1 3.1325 -6.1362 0.0753 31 1 -3.0854 -7.1579 -1.1291 32 1 -2.6720 -7.4020 -3.5437 33 1 -0.3695 -7.6450 -4.3810 34 1 1.9365 -9.5449 -0.5828 35 1 3.3150 -8.6026 0.2003 36 1 0.3797 -8.8175 1.2829 37 1 1.7582 -7.8748 2.0656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291844666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:05 Heat of formation + Delta-G solvation = 1.062624 kcal Electronic energy + Delta-G solvation = -23326.229900 eV Core-core repulsion = 19735.051723 eV Total energy + Delta-G solvation = -3591.178177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32258 -38.64151 -36.94935 -36.64544 -36.08579 -33.39584 -32.48957 -30.87989 -30.64754 -30.59455 -25.78912 -23.78619 -23.33739 -22.16076 -21.99870 -20.19929 -19.50001 -17.47905 -16.83195 -16.33578 -15.81654 -15.72105 -15.19097 -14.75796 -14.51690 -14.33233 -14.29634 -13.78132 -13.43059 -12.94787 -12.41384 -12.28300 -12.15785 -11.94619 -11.87888 -11.64082 -11.37635 -11.11785 -10.99017 -10.92104 -10.83063 -10.67475 -10.58808 -10.15167 -9.90432 -9.60688 -9.25548 -9.06793 -8.71126 -8.55621 -8.52029 -8.28337 -5.93099 -3.97130 0.98595 1.03863 1.92448 2.42428 3.21221 3.30849 3.36044 3.40614 3.42380 3.56318 3.80705 4.25291 4.49993 4.71439 4.72870 4.90927 5.10011 5.14512 5.27772 5.36901 5.41785 5.49455 5.51324 5.77359 5.82920 5.98032 6.04116 6.09656 6.15658 6.28028 6.29866 6.50522 6.80374 6.94315 7.77631 7.91420 7.95310 8.11184 8.42785 8.88090 9.11631 9.66033 11.17733 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003884 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.831987 B = 7207.295213 C = 7430.461909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.128 4.128 11 C 0.509 3.491 12 O -0.512 6.512 13 N -0.706 5.706 14 C 0.147 3.853 15 C -0.033 4.033 16 C 0.030 3.970 17 Cl -0.041 7.041 18 C -0.115 4.115 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.010 4.010 22 Cl -0.059 7.059 23 C -0.165 4.165 24 C -0.174 4.174 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.400 0.600 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -22.195 -3.604 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.168 4.168 11 C 0.297 3.703 12 O -0.385 6.385 13 N -0.360 5.360 14 C 0.059 3.941 15 C -0.036 4.036 16 C 0.002 3.998 17 Cl -0.012 7.012 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.137 4.137 21 C -0.038 4.038 22 Cl -0.030 7.030 23 C -0.203 4.203 24 C -0.213 4.213 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.235 0.765 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.016 -22.015 -3.511 22.294 hybrid contribution 1.125 1.094 0.083 1.572 sum 1.141 -20.921 -3.427 21.231 Atomic orbital electron populations 1.69995 1.06022 1.26590 1.50221 1.25009 0.94802 0.99125 0.95349 0.86676 0.79572 0.83294 0.78527 1.20279 1.21296 1.20278 1.21192 0.92850 0.91101 1.51358 0.92775 1.18850 0.93064 0.89206 0.98505 1.21851 1.00717 0.91973 1.02248 1.21552 0.88954 0.85176 0.74585 1.90696 1.13949 1.87117 1.46711 1.45611 1.09575 1.03504 1.77261 1.18653 0.94234 0.83786 0.97407 1.18487 0.92343 1.01402 0.91371 1.20475 0.92946 0.99740 0.86638 1.98369 1.95818 1.95440 1.11551 1.21135 0.98828 1.00590 0.92796 1.21027 0.96517 0.98630 0.94926 1.21044 0.91424 1.01521 0.99739 1.20583 0.86603 1.04205 0.92372 1.98361 1.20700 1.95860 1.88035 1.23380 0.98329 0.96204 1.02352 1.23665 1.01475 1.02554 0.93562 0.92967 0.95947 0.95852 0.90525 0.90454 0.76516 0.84423 0.84322 0.84545 0.88044 0.87987 0.87923 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.12 4.26 -27.88 -0.12 1.00 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.73 7.60 -10.99 -0.08 9.65 16 12 O -0.51 -11.39 12.06 5.56 0.07 -11.33 16 13 N -0.71 -10.22 5.57 -48.65 -0.27 -10.49 16 14 C 0.15 1.95 1.27 -132.93 -0.17 1.78 16 15 C -0.03 -0.49 3.91 -104.55 -0.41 -0.89 16 16 C 0.03 0.44 4.96 -39.50 -0.20 0.24 16 17 Cl -0.04 -0.62 23.81 -51.86 -1.23 -1.86 16 18 C -0.11 -1.48 9.83 -39.54 -0.39 -1.87 16 19 C -0.09 -1.03 10.04 -39.59 -0.40 -1.43 16 20 C -0.12 -1.39 9.83 -39.54 -0.39 -1.78 16 21 C -0.01 -0.14 6.30 -39.50 -0.25 -0.39 16 22 Cl -0.06 -0.70 27.26 -51.86 -1.41 -2.12 16 23 C -0.16 -1.64 9.23 -26.73 -0.25 -1.89 16 24 C -0.17 -1.99 8.42 -26.69 -0.22 -2.22 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.66 8.78 -40.82 -0.36 4.30 16 31 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.16 6.64 -51.93 -0.35 0.82 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -33.85 341.26 -9.90 -43.75 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.47 Total: 1.29 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.44 Total: -14.36 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.47 Total: -37.39 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -2.65 Total: -3.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.85 -9.90 -43.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291844666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.811 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds