Wall clock time and date at job start Tue Mar 31 2020 15:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47203 * 239.99804 * 3 2 1 5 5 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47100 * 119.99515 * 3 2 1 7 7 C 1.37881 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00081 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99770 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00192 * 185.14314 * 13 11 10 15 15 C 1.50708 * 115.54416 * 39.95422 * 14 13 11 16 16 C 1.38332 * 120.01203 * 259.57229 * 15 14 13 17 17 Cl 1.73598 * 120.00590 * 0.02562 * 16 15 14 18 18 C 1.38353 * 119.98636 * 179.70392 * 16 15 14 19 19 C 1.38223 * 120.01461 * 0.59584 * 18 16 15 20 20 C 1.38222 * 120.02339 * 359.68227 * 19 18 16 21 21 C 1.38330 * 120.01477 * 79.85430 * 15 14 13 22 22 Cl 1.73603 * 120.00514 * 359.97044 * 21 15 14 23 23 C 1.52999 * 117.50158 * 185.62063 * 14 13 11 24 24 C 1.53002 * 60.03018 * 107.50633 * 23 14 13 25 25 H 0.97001 * 119.99097 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47638 * 59.99442 * 9 7 2 27 27 H 1.09001 * 109.46725 * 299.99423 * 9 7 2 28 28 H 1.08996 * 109.47058 * 59.99325 * 10 9 7 29 29 H 1.09004 * 109.46820 * 300.00022 * 10 9 7 30 30 H 0.97005 * 120.00581 * 5.14162 * 13 11 10 31 31 H 1.08008 * 119.99709 * 180.27575 * 18 16 15 32 32 H 1.07997 * 119.99008 * 179.70051 * 19 18 16 33 33 H 1.08002 * 119.99661 * 180.02562 * 20 19 18 34 34 H 1.09000 * 117.49722 * 214.99731 * 23 14 13 35 35 H 1.08995 * 117.50210 * 0.02562 * 23 14 13 36 36 H 1.08996 * 117.50334 * 107.50047 * 24 23 14 37 37 H 1.09004 * 117.49572 * 252.52872 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1653 -6.1344 0.0008 14 6 1.4371 -7.4006 -0.1124 15 6 0.2804 -7.4010 -1.0784 16 6 -1.0140 -7.2702 -0.6080 17 17 -1.3061 -7.1049 1.0952 18 6 -2.0750 -7.2645 -1.4958 19 6 -1.8430 -7.4017 -2.8515 20 6 -0.5504 -7.5382 -3.3216 21 6 0.5120 -7.5380 -2.4352 22 17 2.1355 -7.7087 -3.0259 23 6 2.2430 -8.6938 0.0252 24 6 1.3039 -8.2551 1.1506 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8904 29 1 2.8717 -3.6045 -0.8895 30 1 3.1325 -6.1362 0.0753 31 1 -3.0854 -7.1579 -1.1291 32 1 -2.6720 -7.4020 -3.5437 33 1 -0.3695 -7.6450 -4.3810 34 1 1.9365 -9.5449 -0.5828 35 1 3.3150 -8.6026 0.2003 36 1 0.3797 -8.8175 1.2829 37 1 1.7582 -7.8748 2.0656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291844666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:05 Heat of formation + Delta-G solvation = -19.398533 kcal Electronic energy + Delta-G solvation = -23327.117162 eV Core-core repulsion = 19735.051723 eV Total energy + Delta-G solvation = -3592.065440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40780 -39.90246 -38.05195 -37.63790 -37.11973 -35.51393 -33.85986 -32.67199 -31.72503 -31.55941 -27.77855 -24.88174 -24.27542 -23.85505 -22.93787 -21.56083 -20.83547 -18.80686 -18.45416 -17.45988 -17.29703 -16.78911 -16.52167 -16.33865 -16.07379 -15.51825 -15.27271 -15.01139 -14.60141 -14.29529 -14.09323 -13.98703 -13.28143 -13.19870 -12.96814 -12.82302 -12.77406 -12.57583 -12.48710 -12.29654 -12.00117 -11.92362 -11.83044 -11.69638 -11.59160 -11.29393 -11.15271 -10.64050 -10.54658 -9.77009 -9.69279 -9.60724 -8.16868 -6.30521 0.01994 0.06551 0.93959 1.39509 1.41269 1.45565 1.53210 1.82499 2.16881 2.43105 2.52922 2.83978 3.15943 3.31052 3.81036 3.85937 3.99180 4.11700 4.24985 4.27262 4.38796 4.43655 4.54075 4.58390 4.71278 4.73143 4.97083 5.08358 5.09231 5.15674 5.18194 5.22453 5.50034 5.60839 5.64113 5.67530 5.87775 6.20141 6.69680 6.87847 7.39152 7.49463 8.95283 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003884 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.831987 B = 7207.295213 C = 7430.461909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.052 3.948 10 C -0.118 4.118 11 C 0.509 3.491 12 O -0.549 6.549 13 N -0.686 5.686 14 C 0.119 3.881 15 C -0.051 4.051 16 C 0.006 3.994 17 Cl -0.058 7.058 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.121 4.121 21 C -0.025 4.025 22 Cl -0.050 7.050 23 C -0.134 4.134 24 C -0.174 4.174 25 H 0.262 0.738 26 H -0.020 1.020 27 H -0.018 1.018 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.415 0.585 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -22.858 -4.514 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.014 3.986 10 C -0.158 4.158 11 C 0.297 3.703 12 O -0.426 6.426 13 N -0.339 5.339 14 C 0.032 3.968 15 C -0.053 4.053 16 C -0.022 4.022 17 Cl -0.029 7.029 18 C -0.148 4.148 19 C -0.106 4.106 20 C -0.140 4.140 21 C -0.052 4.052 22 Cl -0.020 7.020 23 C -0.171 4.171 24 C -0.213 4.213 25 H 0.071 0.929 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.253 0.747 31 H 0.166 0.834 32 H 0.190 0.810 33 H 0.179 0.821 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.229 -22.729 -4.419 23.262 hybrid contribution 0.421 1.229 0.327 1.339 sum 2.650 -21.500 -4.092 22.046 Atomic orbital electron populations 1.70175 1.08210 1.27740 1.51448 1.26084 0.95682 1.03728 0.94655 0.85429 0.78130 0.77620 0.79405 1.18793 1.21242 1.18799 1.21685 0.93838 0.91841 1.50839 0.91015 1.18579 0.93431 0.92078 0.94505 1.21598 0.99356 0.90782 1.04063 1.21180 0.88336 0.85999 0.74776 1.90694 1.15425 1.87717 1.48742 1.45241 1.10257 1.02922 1.75452 1.18876 0.95336 0.83827 0.98764 1.18672 0.92535 1.01940 0.92179 1.20753 0.94018 1.01214 0.86199 1.98348 1.95899 1.95679 1.12939 1.21454 0.99094 1.00660 0.93611 1.21439 0.97515 0.97022 0.94646 1.21442 0.91268 1.00446 1.00845 1.20816 0.87540 1.04515 0.92377 1.98353 1.20072 1.95829 1.87795 1.23494 0.99126 0.94119 1.00360 1.23652 1.02112 1.02099 0.93443 0.92929 1.00108 0.99974 0.88454 0.88712 0.74702 0.83389 0.80976 0.82137 0.87046 0.85698 0.88184 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.45 0.28 -59.53 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.05 2.90 4.26 29.85 0.13 3.03 16 10 C -0.12 -4.84 5.64 29.85 0.17 -4.67 16 11 C 0.51 19.55 7.60 87.66 0.67 20.22 16 12 O -0.55 -25.33 12.06 -3.02 -0.04 -25.36 16 13 N -0.69 -19.02 5.57 -426.22 -2.37 -21.39 16 14 C 0.12 3.02 1.27 2.88 0.00 3.02 16 15 C -0.05 -1.45 3.91 -19.82 -0.08 -1.53 16 16 C 0.01 0.17 4.96 22.32 0.11 0.28 16 17 Cl -0.06 -1.82 23.81 -2.72 -0.06 -1.88 16 18 C -0.13 -3.33 9.83 22.29 0.22 -3.11 16 19 C -0.09 -1.84 10.04 22.26 0.22 -1.62 16 20 C -0.12 -2.66 9.83 22.29 0.22 -2.44 16 21 C -0.03 -0.64 6.30 22.32 0.14 -0.50 16 22 Cl -0.05 -1.10 27.26 -2.72 -0.07 -1.17 16 23 C -0.13 -2.32 9.23 30.59 0.28 -2.04 16 24 C -0.17 -3.81 8.42 30.62 0.26 -3.55 16 25 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 26 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 27 H -0.02 -1.16 8.10 -2.39 -0.02 -1.17 16 28 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 29 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.42 8.72 8.78 -92.70 -0.81 7.90 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 2.24 6.64 -2.39 -0.02 2.22 16 37 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -76.28 341.26 3.09 -73.19 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.29 Total: 13.18 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.04 Total: -23.84 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.09 Total: -80.92 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.36 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.14 Total: -3.06 kcal Total: -76.28 3.09 -73.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291844666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.791 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds