Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99732 * 3 2 1 5 5 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47165 * 119.99906 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.47229 * 121.33499 * 179.97438 * 13 11 10 15 15 C 1.53326 * 107.62304 * 115.79172 * 14 13 11 16 16 C 1.50604 * 110.82831 * 47.67372 * 15 14 13 17 17 C 1.39103 * 117.60753 * 160.37036 * 16 15 14 18 18 Cl 1.73600 * 119.71199 * 358.79576 * 17 16 15 19 19 C 1.37996 * 120.57081 * 178.78827 * 17 16 15 20 20 C 1.38359 * 119.80030 * 0.03890 * 19 17 16 21 21 Cl 1.73604 * 120.15109 * 180.24247 * 20 19 17 22 22 C 1.38081 * 119.70487 * 0.26802 * 20 19 17 23 23 C 1.37659 * 122.85612 * 339.67632 * 16 15 14 24 24 C 1.46679 * 121.33565 * 0.28210 * 13 11 10 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 1.08997 * 109.77875 * 235.39009 * 14 13 11 31 31 H 1.09003 * 109.77749 * 356.18804 * 14 13 11 32 32 H 1.08997 * 109.31537 * 287.25870 * 15 14 13 33 33 H 1.08999 * 109.07980 * 167.92912 * 15 14 13 34 34 H 1.07996 * 120.10103 * 180.02562 * 19 17 16 35 35 H 1.07997 * 119.74257 * 179.97438 * 22 20 19 36 36 H 1.09004 * 109.43687 * 344.46986 * 24 13 11 37 37 H 1.08997 * 109.44089 * 104.34264 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4596 -7.4261 -0.0001 15 6 1.7874 -8.1365 -1.3188 16 6 3.2680 -8.1016 -1.5922 17 6 3.7791 -9.0298 -2.4934 18 17 2.7175 -10.1898 -3.2289 19 6 5.1228 -9.0364 -2.8079 20 6 5.9706 -8.1130 -2.2222 21 17 7.6613 -8.1090 -2.6161 22 6 5.4659 -7.1950 -1.3226 23 6 4.1150 -7.1905 -1.0028 24 6 3.6322 -6.1684 -0.0039 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 1.7987 -8.0304 0.8412 31 1 0.3851 -7.2590 0.0744 32 1 1.2603 -7.6427 -2.1350 33 1 1.4589 -9.1739 -1.2558 34 1 5.5114 -9.7602 -3.5089 35 1 6.1272 -6.4743 -0.8648 36 1 4.0176 -5.1856 -0.2755 37 1 3.9900 -6.4355 0.9904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291868359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -36.017220 kcal Electronic energy + Delta-G solvation = -22488.348133 eV Core-core repulsion = 18895.562053 eV Total energy + Delta-G solvation = -3592.786080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73489 -39.10146 -37.16986 -36.90534 -35.75865 -33.64239 -33.06608 -31.68585 -30.99726 -29.45673 -26.45615 -25.52193 -23.95898 -22.80864 -21.89583 -20.56893 -18.52669 -17.53377 -17.14642 -16.32039 -16.05399 -15.77710 -15.49058 -15.12616 -14.71521 -14.46266 -14.34590 -13.79589 -13.59119 -13.27572 -12.98073 -12.76186 -12.72385 -12.44063 -12.19939 -11.98924 -11.75947 -11.48392 -11.28886 -11.17979 -11.09898 -11.01850 -10.92796 -10.62587 -9.99632 -9.68676 -9.25593 -9.18445 -9.05382 -8.90419 -8.60174 -8.33528 -5.97743 -4.02532 0.58981 0.66607 1.46664 1.92078 2.98094 3.07609 3.12244 3.33334 3.38418 3.39823 4.11613 4.32430 4.45127 4.51890 4.60363 4.76148 4.93590 5.03894 5.09878 5.20745 5.25485 5.37097 5.37389 5.45645 5.55482 5.66936 5.81644 5.87102 5.96669 6.13392 6.14189 6.18407 6.53024 6.83154 7.61402 7.71517 7.82673 8.04428 8.35102 8.62946 9.05397 9.61217 11.13136 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.003029 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.387067 B = 9243.027294 C =10713.930712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.518 3.482 12 O -0.527 6.527 13 N -0.628 5.628 14 C 0.111 3.889 15 C -0.102 4.102 16 C -0.050 4.050 17 C -0.027 4.027 18 Cl -0.056 7.056 19 C -0.103 4.103 20 C -0.027 4.027 21 Cl -0.058 7.058 22 C -0.098 4.098 23 C -0.067 4.067 24 C 0.151 3.849 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.697 -22.438 -3.660 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.309 3.691 12 O -0.401 6.401 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.054 4.054 18 Cl -0.027 7.027 19 C -0.122 4.122 20 C -0.054 4.054 21 Cl -0.029 7.029 22 C -0.117 4.117 23 C -0.069 4.069 24 C 0.028 3.972 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.127 0.873 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.884 -22.378 -3.757 25.615 hybrid contribution 0.764 0.655 -0.277 1.043 sum 12.648 -21.723 -4.034 25.458 Atomic orbital electron populations 1.69983 1.06065 1.26744 1.49998 1.25015 0.94817 0.99215 0.95249 0.86658 0.79564 0.83186 0.78560 1.20236 1.21278 1.20221 1.21162 0.92870 0.90980 1.51664 0.92648 1.18902 0.93138 0.89309 0.98655 1.21920 1.00854 0.91836 1.02358 1.21583 0.88426 0.85116 0.73996 1.90673 1.14251 1.86901 1.48308 1.48283 1.05739 1.06278 1.76124 1.21618 0.99825 0.83967 0.95745 1.21060 0.90606 1.02437 0.99865 1.19486 0.96808 0.93595 0.95207 1.20792 0.90913 0.94856 0.98857 1.98379 1.65360 1.57645 1.81301 1.20785 0.91050 0.99457 1.00941 1.20553 0.85934 0.98773 1.00129 1.98392 1.13284 1.98081 1.93191 1.21063 0.95008 0.98467 0.97152 1.19810 0.92342 0.96650 0.98051 1.20501 0.81095 0.98579 0.97057 0.92859 0.95828 0.95772 0.90098 0.90169 0.91114 0.88020 0.89126 0.89055 0.83899 0.83775 0.87310 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.54 4.06 -27.88 -0.11 -2.65 16 11 C 0.52 9.65 7.72 -10.98 -0.08 9.57 16 12 O -0.53 -12.01 15.47 5.55 0.09 -11.93 16 13 N -0.63 -8.66 2.93 -174.04 -0.51 -9.17 16 14 C 0.11 1.30 6.47 -3.48 -0.02 1.28 16 15 C -0.10 -1.06 5.27 -27.76 -0.15 -1.21 16 16 C -0.05 -0.52 5.77 -104.56 -0.60 -1.12 16 17 C -0.03 -0.26 6.31 -39.35 -0.25 -0.51 16 18 Cl -0.06 -0.51 27.18 -51.86 -1.41 -1.91 16 19 C -0.10 -0.92 9.60 -39.63 -0.38 -1.30 16 20 C -0.03 -0.24 6.31 -39.59 -0.25 -0.49 16 21 Cl -0.06 -0.49 28.97 -51.86 -1.50 -1.99 16 22 C -0.10 -0.86 9.41 -39.42 -0.37 -1.24 16 23 C -0.07 -0.67 5.82 -104.54 -0.61 -1.28 16 24 C 0.15 1.57 6.08 -5.02 -0.03 1.54 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 29 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.35 7.07 -51.93 -0.37 0.98 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.80 7.09 -51.93 -0.37 0.43 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.01 8.05 -52.49 -0.42 0.59 16 36 H 0.11 1.10 6.19 -51.93 -0.32 0.78 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -32.81 339.17 -10.26 -43.08 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.37 Total: -3.18 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.39 Total: -9.97 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.23 Total: -35.59 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -2.91 Total: -3.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.81 -10.26 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291868359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.061 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds