Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99732 * 3 2 1 5 5 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47165 * 119.99906 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.47229 * 121.33499 * 179.97438 * 13 11 10 15 15 C 1.53326 * 107.62304 * 115.79172 * 14 13 11 16 16 C 1.50604 * 110.82831 * 47.67372 * 15 14 13 17 17 C 1.39103 * 117.60753 * 160.37036 * 16 15 14 18 18 Cl 1.73600 * 119.71199 * 358.79576 * 17 16 15 19 19 C 1.37996 * 120.57081 * 178.78827 * 17 16 15 20 20 C 1.38359 * 119.80030 * 0.03890 * 19 17 16 21 21 Cl 1.73604 * 120.15109 * 180.24247 * 20 19 17 22 22 C 1.38081 * 119.70487 * 0.26802 * 20 19 17 23 23 C 1.37659 * 122.85612 * 339.67632 * 16 15 14 24 24 C 1.46679 * 121.33565 * 0.28210 * 13 11 10 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 1.08997 * 109.77875 * 235.39009 * 14 13 11 31 31 H 1.09003 * 109.77749 * 356.18804 * 14 13 11 32 32 H 1.08997 * 109.31537 * 287.25870 * 15 14 13 33 33 H 1.08999 * 109.07980 * 167.92912 * 15 14 13 34 34 H 1.07996 * 120.10103 * 180.02562 * 19 17 16 35 35 H 1.07997 * 119.74257 * 179.97438 * 22 20 19 36 36 H 1.09004 * 109.43687 * 344.46986 * 24 13 11 37 37 H 1.08997 * 109.44089 * 104.34264 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4596 -7.4261 -0.0001 15 6 1.7874 -8.1365 -1.3188 16 6 3.2680 -8.1016 -1.5922 17 6 3.7791 -9.0298 -2.4934 18 17 2.7175 -10.1898 -3.2289 19 6 5.1228 -9.0364 -2.8079 20 6 5.9706 -8.1130 -2.2222 21 17 7.6613 -8.1090 -2.6161 22 6 5.4659 -7.1950 -1.3226 23 6 4.1150 -7.1905 -1.0028 24 6 3.6322 -6.1684 -0.0039 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 1.7987 -8.0304 0.8412 31 1 0.3851 -7.2590 0.0744 32 1 1.2603 -7.6427 -2.1350 33 1 1.4589 -9.1739 -1.2558 34 1 5.5114 -9.7602 -3.5089 35 1 6.1272 -6.4743 -0.8648 36 1 4.0176 -5.1856 -0.2755 37 1 3.9900 -6.4355 0.9904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291868359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -54.177536 kcal Electronic energy + Delta-G solvation = -22489.135623 eV Core-core repulsion = 18895.562053 eV Total energy + Delta-G solvation = -3593.573570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66776 -40.29720 -37.90187 -37.73841 -36.72669 -35.59257 -34.13201 -32.86075 -32.48637 -30.37069 -27.99280 -26.78838 -25.06477 -23.66363 -23.33026 -21.81462 -19.73241 -18.84361 -18.27768 -17.69166 -17.19358 -16.91291 -16.41638 -16.41504 -16.24510 -15.74405 -15.11938 -14.83054 -14.75256 -14.37225 -14.20633 -13.93090 -13.79921 -13.59402 -13.41436 -13.16773 -13.01526 -12.75927 -12.54720 -12.51506 -12.28035 -11.99858 -11.91498 -11.82864 -11.81356 -11.55976 -11.30155 -10.73206 -10.53991 -9.97382 -9.67789 -9.62127 -8.15894 -6.29871 -0.12733 -0.04757 0.77392 1.22144 1.44013 1.48222 1.55776 1.65680 1.94945 2.27229 2.44863 3.17377 3.34708 3.52841 3.68654 3.80594 3.94260 4.05018 4.17895 4.23370 4.36830 4.45037 4.45900 4.56647 4.58822 4.62764 4.74486 4.90791 4.97001 4.98912 5.08562 5.21002 5.44676 5.46148 5.53764 5.64595 5.87010 6.19100 6.34382 6.88604 7.22005 7.40572 8.96586 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.003029 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.387067 B = 9243.027294 C =10713.930712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.517 3.483 12 O -0.584 6.584 13 N -0.617 5.617 14 C 0.109 3.891 15 C -0.094 4.094 16 C -0.064 4.064 17 C -0.033 4.033 18 Cl -0.054 7.054 19 C -0.102 4.102 20 C -0.031 4.031 21 Cl -0.052 7.052 22 C -0.093 4.093 23 C -0.072 4.072 24 C 0.145 3.855 25 H 0.262 0.738 26 H -0.020 1.020 27 H -0.017 1.017 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.116 0.884 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.122 -22.952 -3.541 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.308 3.692 12 O -0.463 6.463 13 N -0.350 5.350 14 C -0.013 4.013 15 C -0.131 4.131 16 C -0.065 4.065 17 C -0.060 4.060 18 Cl -0.025 7.025 19 C -0.121 4.121 20 C -0.058 4.058 21 Cl -0.023 7.023 22 C -0.112 4.112 23 C -0.073 4.073 24 C 0.023 3.977 25 H 0.071 0.929 26 H -0.002 1.002 27 H 0.001 0.999 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.134 0.866 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.380 -22.946 -3.642 27.863 hybrid contribution -0.264 0.702 -0.340 0.823 sum 15.116 -22.245 -3.982 27.188 Atomic orbital electron populations 1.70173 1.08339 1.27821 1.51517 1.26121 0.95673 1.03908 0.94690 0.85402 0.78069 0.77431 0.79523 1.18733 1.21567 1.18523 1.21686 0.94061 0.91503 1.50720 0.90382 1.18683 0.93693 0.92462 0.94637 1.21673 0.99384 0.89913 1.04731 1.21334 0.87620 0.86292 0.73941 1.90656 1.16512 1.87774 1.51364 1.48167 1.07488 1.05499 1.73851 1.21781 0.98630 0.83234 0.97696 1.20947 0.91018 1.02892 0.98276 1.19519 0.96523 0.94389 0.96060 1.20825 0.91309 0.94938 0.98945 1.98381 1.65373 1.57517 1.81251 1.20964 0.90736 0.99595 1.00851 1.20646 0.86282 0.98750 1.00087 1.98399 1.12726 1.98053 1.93140 1.21236 0.94695 0.98538 0.96698 1.19753 0.92841 0.96494 0.98242 1.20827 0.78449 0.99419 0.99003 0.92918 1.00200 0.99871 0.87278 0.87938 0.88262 0.90202 0.90957 0.87443 0.82624 0.81716 0.86577 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.29 21.44 0.28 -58.97 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.35 4.26 29.85 0.13 2.47 16 10 C -0.12 -4.53 4.06 29.85 0.12 -4.41 16 11 C 0.52 19.51 7.72 87.66 0.68 20.18 16 12 O -0.58 -28.12 15.47 -3.04 -0.05 -28.17 16 13 N -0.62 -16.28 2.93 -822.92 -2.41 -18.69 16 14 C 0.11 2.47 6.47 86.35 0.56 3.02 16 15 C -0.09 -1.87 5.27 29.93 0.16 -1.71 16 16 C -0.06 -1.21 5.77 -19.82 -0.11 -1.32 16 17 C -0.03 -0.58 6.31 22.42 0.14 -0.44 16 18 Cl -0.05 -0.91 27.18 -2.72 -0.07 -0.98 16 19 C -0.10 -1.59 9.60 22.24 0.21 -1.38 16 20 C -0.03 -0.47 6.31 22.26 0.14 -0.33 16 21 Cl -0.05 -0.74 28.97 -2.72 -0.08 -0.82 16 22 C -0.09 -1.34 9.41 22.37 0.21 -1.13 16 23 C -0.07 -1.24 5.82 -19.81 -0.12 -1.35 16 24 C 0.14 2.58 6.08 85.65 0.52 3.10 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 27 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 28 H 0.11 3.57 8.12 -2.38 -0.02 3.55 16 29 H 0.10 3.48 7.58 -2.39 -0.02 3.46 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.20 7.07 -2.39 -0.02 2.18 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.76 7.09 -2.39 -0.02 1.75 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.17 1.65 8.05 -2.91 -0.02 1.63 16 36 H 0.12 1.93 6.19 -2.39 -0.01 1.91 16 37 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.76 339.17 4.14 -70.62 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.10 Total: 4.51 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.33 Total: -13.19 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.12 Total: -77.66 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.17 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.15 Total: -1.81 kcal Total: -74.76 4.14 -70.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291868359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.442 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds