Wall clock time and date at job start Tue Mar 31 2020 15:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47342 * 240.00203 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46936 * 119.99920 * 3 2 1 7 7 C 1.37871 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47194 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99619 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99953 * 179.97438 * 11 10 9 14 14 N 1.40099 * 119.99583 * 180.02562 * 13 11 10 15 15 C 1.34783 * 119.99800 * 179.97438 * 14 13 11 16 16 S 1.71201 * 119.99885 * 180.02562 * 15 14 13 17 17 N 1.34772 * 119.99977 * 0.02562 * 15 14 13 18 18 C 1.39890 * 120.00234 * 185.55231 * 17 15 14 19 19 C 1.38908 * 120.06009 * 41.90779 * 18 17 15 20 20 C 1.38094 * 119.94890 * 180.02562 * 19 18 17 21 21 C 1.38290 * 120.08882 * 359.97438 * 20 19 18 22 22 C 1.38377 * 120.12643 * 0.04549 * 21 20 19 23 23 Cl 1.73603 * 119.97890 * 179.97438 * 22 21 20 24 24 C 1.38244 * 120.04640 * 359.95511 * 22 21 20 25 25 H 0.97000 * 120.00004 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47333 * 59.99021 * 9 7 2 27 27 H 1.09005 * 109.46728 * 299.99642 * 9 7 2 28 28 H 1.09002 * 109.47218 * 60.00066 * 10 9 7 29 29 H 1.08997 * 109.47386 * 299.99885 * 10 9 7 30 30 H 0.96996 * 120.00043 * 359.97438 * 13 11 10 31 31 H 0.96996 * 120.00374 * 359.97438 * 14 13 11 32 32 H 0.97003 * 120.00088 * 5.55302 * 17 15 14 33 33 H 1.07992 * 120.02612 * 0.02562 * 19 18 17 34 34 H 1.08007 * 119.95868 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.93773 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.04326 * 180.29535 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 8 0.2789 -4.9671 -0.0033 13 7 2.1657 -6.1343 -0.0047 14 7 1.4651 -7.3476 -0.0058 15 6 2.1391 -8.5149 -0.0077 16 16 1.2830 -9.9975 -0.0097 17 7 3.4868 -8.5149 -0.0082 18 6 4.1862 -9.7205 -0.1275 19 6 3.7590 -10.6864 -1.0296 20 6 4.4509 -11.8760 -1.1451 21 6 5.5687 -12.1064 -0.3642 22 6 5.9971 -11.1467 0.5359 23 17 7.4005 -11.4403 1.5147 24 6 5.3085 -9.9539 0.6559 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8881 28 1 2.8719 -3.6051 0.8873 29 1 2.8719 -3.6035 -0.8926 30 1 3.1356 -6.1343 -0.0058 31 1 0.4952 -7.3476 -0.0051 32 1 3.9718 -7.6789 0.0742 33 1 2.8865 -10.5074 -1.6402 34 1 4.1191 -12.6270 -1.8468 35 1 6.1083 -13.0375 -0.4568 36 1 5.6457 -9.2029 1.3550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292026668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:02 Heat of formation + Delta-G solvation = 37.141369 kcal Electronic energy + Delta-G solvation = -21449.708104 eV Core-core repulsion = 17894.430876 eV Total energy + Delta-G solvation = -3555.277228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99165 -39.93654 -38.32223 -36.88335 -35.56265 -33.78309 -32.56642 -31.31441 -30.98464 -29.77443 -26.23177 -24.60111 -23.49641 -22.89742 -21.84872 -20.95967 -19.42641 -19.02559 -17.72064 -16.83541 -16.47473 -16.40812 -16.07726 -15.76384 -15.56039 -14.95217 -14.60161 -14.52553 -14.11483 -13.91334 -13.85057 -12.93345 -12.40087 -12.33066 -12.28565 -11.89059 -11.64923 -11.47207 -11.35684 -11.33740 -11.06619 -10.79154 -10.26585 -10.13622 -9.78330 -9.73450 -9.34594 -9.29059 -8.75371 -8.50203 -8.03389 -7.60248 -6.13744 -4.20168 0.39241 0.82193 0.96903 1.15676 1.64777 1.82422 2.23299 2.56826 3.23086 3.23168 3.29083 3.29854 3.92171 4.31922 4.36333 4.60279 4.71377 4.74749 4.84352 4.97369 5.21766 5.23378 5.55697 5.62476 5.74597 5.77874 5.79050 5.93862 6.01731 6.21004 6.42836 6.55291 6.75724 6.98560 7.50825 7.55927 7.83216 7.98948 8.19424 8.86512 9.44919 10.96869 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.002183 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.865709 B =12825.680009 C =14131.874253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.509 6.509 13 N -0.564 5.564 14 N -0.453 5.453 15 C 0.556 3.444 16 S -0.590 6.590 17 N -0.636 5.636 18 C 0.145 3.855 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.105 4.105 22 C -0.030 4.030 23 Cl -0.068 7.068 24 C -0.116 4.116 25 H 0.264 0.736 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.417 0.583 31 H 0.462 0.538 32 H 0.405 0.595 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -22.320 -1.153 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.379 6.379 13 N -0.317 5.317 14 N -0.178 5.178 15 C 0.196 3.804 16 S -0.462 6.462 17 N -0.265 5.265 18 C 0.051 3.949 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.058 4.058 23 Cl -0.039 7.039 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.259 0.741 31 H 0.312 0.688 32 H 0.244 0.756 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.361 -22.951 -1.061 26.578 hybrid contribution 1.295 2.112 0.310 2.497 sum 14.656 -20.839 -0.751 25.488 Atomic orbital electron populations 1.69968 1.06108 1.27082 1.49306 1.25018 0.94864 0.99390 0.94957 0.86603 0.79539 0.82896 0.78625 1.20148 1.21170 1.20155 1.21073 0.92922 0.90635 1.52596 0.92434 1.18973 0.93045 0.88984 0.99082 1.22008 1.01125 0.89205 1.03576 1.22418 0.89402 0.83581 0.74059 1.90770 1.14009 1.86284 1.46859 1.46352 1.08335 0.96718 1.80312 1.44898 1.09715 0.94713 1.68521 1.22543 0.85359 0.90533 0.81942 1.93682 1.66698 1.11959 1.73831 1.42037 1.03054 1.09662 1.71741 1.17113 0.93490 0.86739 0.97515 1.21515 0.98586 0.92957 0.95926 1.20967 0.94164 0.97206 0.99449 1.21143 0.97212 0.98799 0.95303 1.20475 0.91979 0.95821 0.97486 1.98383 1.39820 1.95988 1.69697 1.20691 0.96407 0.97302 0.99386 0.92632 0.95468 0.95465 0.89091 0.89069 0.74138 0.68752 0.75582 0.83181 0.84318 0.84692 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.83 9.11 -34.44 -0.31 -14.14 16 8 H 0.06 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.04 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.12 -1.90 5.64 -27.88 -0.16 -2.06 16 11 C 0.52 7.87 7.95 -10.98 -0.09 7.78 16 12 O -0.51 -10.08 15.82 5.55 0.09 -10.00 16 13 N -0.56 -5.84 6.25 31.22 0.20 -5.65 16 14 N -0.45 -5.04 6.26 29.96 0.19 -4.86 16 15 C 0.56 5.99 7.74 -86.92 -0.67 5.32 16 16 S -0.59 -8.32 26.62 -107.50 -2.86 -11.18 16 17 N -0.64 -5.03 5.28 -11.40 -0.06 -5.09 16 18 C 0.15 1.24 5.91 -83.71 -0.49 0.74 16 19 C -0.07 -0.60 7.86 -39.39 -0.31 -0.91 16 20 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 21 C -0.11 -0.74 9.83 -39.51 -0.39 -1.13 16 22 C -0.03 -0.23 6.32 -39.53 -0.25 -0.48 16 23 Cl -0.07 -0.51 28.95 -51.86 -1.50 -2.02 16 24 C -0.12 -0.90 9.75 -39.36 -0.38 -1.28 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.42 2.68 6.72 -182.60 -1.23 1.46 16 31 H 0.46 5.78 7.98 -182.60 -1.46 4.32 16 32 H 0.41 2.05 6.77 -40.82 -0.28 1.77 16 33 H 0.15 1.50 6.27 -50.04 -0.31 1.19 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -33.44 343.62 -12.50 -45.94 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.77 Total: 2.32 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.67 Total: -4.96 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 1.06 Total: -40.68 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -2.86 Total: -11.18 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.44 -12.50 -45.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292026668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.085 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds