Wall clock time and date at job start Tue Mar 31 2020 15:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47304 * 240.00301 * 3 2 1 5 5 H 1.48506 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47286 * 120.00107 * 3 2 1 7 7 C 1.37878 * 119.99436 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00584 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46797 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00159 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99790 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99869 * 184.98659 * 13 11 10 15 15 C 1.50700 * 115.55108 * 294.72791 * 14 13 11 16 16 C 1.38266 * 119.98086 * 98.23229 * 15 14 13 17 17 C 1.38204 * 120.04050 * 180.29793 * 16 15 14 18 18 C 1.38352 * 119.99313 * 359.44843 * 17 16 15 19 19 Cl 1.73599 * 120.01574 * 180.27287 * 18 17 16 20 20 C 1.38438 * 119.96389 * 0.54796 * 18 17 16 21 21 Cl 1.73605 * 120.02038 * 179.74821 * 20 18 17 22 22 C 1.38205 * 119.97968 * 278.24805 * 15 14 13 23 23 C 1.53006 * 117.49949 * 80.40031 * 14 13 11 24 24 C 1.53001 * 117.49857 * 149.05478 * 14 13 11 25 25 H 0.97001 * 119.99518 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46700 * 59.99627 * 9 7 2 27 27 H 1.09005 * 109.46541 * 300.00133 * 9 7 2 28 28 H 1.09000 * 109.47427 * 59.99734 * 10 9 7 29 29 H 1.08997 * 109.47170 * 299.99523 * 10 9 7 30 30 H 0.96994 * 120.00039 * 4.98002 * 13 11 10 31 31 H 1.07997 * 119.98374 * 0.02562 * 16 15 14 32 32 H 1.07996 * 120.00479 * 179.71729 * 17 16 15 33 33 H 1.07995 * 120.00099 * 359.96656 * 22 15 14 34 34 H 1.09001 * 117.49853 * 215.00812 * 23 14 13 35 35 H 1.09002 * 117.49675 * 0.02562 * 23 14 13 36 36 H 1.08996 * 117.50223 * 359.97438 * 24 14 13 37 37 H 1.09001 * 117.49787 * 144.99678 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2789 -4.9671 -0.0030 13 7 2.1655 -6.1344 -0.0014 14 6 1.4372 -7.4007 -0.1121 15 6 0.5285 -7.7312 1.0438 16 6 -0.8260 -7.4682 0.9549 17 6 -1.6595 -7.7651 2.0166 18 6 -1.1403 -8.3364 3.1647 19 17 -2.1879 -8.7161 4.4959 20 6 0.2158 -8.5998 3.2536 21 17 0.8698 -9.3106 4.6962 22 6 1.0496 -8.2967 2.1921 23 6 0.9922 -7.8399 -1.5086 24 6 2.1452 -8.5642 -0.8093 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8712 -3.6048 0.8890 29 1 2.8725 -3.6040 -0.8909 30 1 3.1326 -6.1360 0.0724 31 1 -1.2323 -7.0264 0.0571 32 1 -2.7167 -7.5552 1.9484 33 1 2.1076 -8.5022 2.2607 34 1 0.0421 -8.3678 -1.5913 35 1 1.2417 -7.1869 -2.3449 36 1 3.1526 -8.3874 -1.1859 37 1 1.9537 -9.5687 -0.4319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292387708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:17 Heat of formation + Delta-G solvation = -9.939852 kcal Electronic energy + Delta-G solvation = -22411.113436 eV Core-core repulsion = 18819.458156 eV Total energy + Delta-G solvation = -3591.655280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39707 -38.90603 -37.31831 -36.68119 -36.29768 -33.46470 -32.63696 -31.15426 -30.82417 -30.52281 -25.87531 -23.86056 -23.56751 -22.25962 -22.09932 -20.23521 -19.52721 -17.71040 -16.91241 -16.51314 -15.95428 -15.73464 -15.48541 -15.05191 -14.53615 -14.41931 -14.15574 -14.02413 -13.73367 -13.11822 -12.48831 -12.26031 -12.09931 -12.05988 -12.04092 -11.74150 -11.58018 -11.24721 -11.18102 -11.06149 -10.96345 -10.89489 -10.64285 -10.45410 -9.97892 -9.68804 -9.26703 -9.13671 -9.08176 -8.90874 -8.66675 -8.33207 -5.97551 -4.02041 0.77145 0.96019 1.67210 2.03644 3.11000 3.16174 3.33417 3.34995 3.38492 3.40173 3.63611 4.23489 4.46231 4.48103 4.62716 4.77359 4.98596 5.08660 5.17033 5.29446 5.36762 5.37484 5.52953 5.62921 5.68984 5.77508 5.90101 5.98320 6.18668 6.20128 6.29633 6.45636 6.67307 6.85448 7.71904 7.80802 7.83816 8.04978 8.36696 8.73139 9.06112 9.61587 11.13272 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003027 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.287664 B = 9248.521748 C =10173.581206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.521 6.521 13 N -0.712 5.712 14 C 0.138 3.862 15 C -0.039 4.039 16 C -0.055 4.055 17 C -0.103 4.103 18 C -0.027 4.027 19 Cl -0.055 7.055 20 C -0.038 4.038 21 Cl -0.055 7.055 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.165 4.165 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.401 0.599 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -23.064 2.790 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.395 6.395 13 N -0.365 5.365 14 C 0.050 3.950 15 C -0.041 4.041 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.055 4.055 19 Cl -0.026 7.026 20 C -0.065 4.065 21 Cl -0.026 7.026 22 C -0.102 4.102 23 C -0.203 4.203 24 C -0.202 4.202 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.174 -22.992 3.026 23.220 hybrid contribution 0.949 0.946 0.368 1.390 sum 2.123 -22.046 3.394 22.406 Atomic orbital electron populations 1.69987 1.06040 1.26703 1.50046 1.25013 0.94823 0.99194 0.95260 0.86660 0.79567 0.83200 0.78551 1.20250 1.21264 1.20245 1.21180 0.92877 0.91043 1.51604 0.92706 1.18876 0.93104 0.89276 0.98573 1.21878 1.00783 0.91781 1.02472 1.21627 0.88817 0.85232 0.74135 1.90639 1.14287 1.87324 1.47218 1.45688 1.09744 1.03494 1.77620 1.18803 0.98197 0.86514 0.91483 1.19099 0.93486 0.97728 0.93800 1.21212 0.92440 0.94719 0.99013 1.21084 1.01353 0.98462 0.91263 1.20805 0.89746 1.03451 0.91456 1.98381 1.65733 1.92772 1.45720 1.20628 0.91751 1.03655 0.90499 1.98378 1.85891 1.82006 1.36372 1.20795 0.99844 0.98545 0.91002 1.23393 0.99020 1.02634 0.95211 1.23368 0.98219 0.95949 1.02669 0.92892 0.95831 0.95860 0.90324 0.90208 0.76416 0.83700 0.83866 0.84246 0.87977 0.87837 0.87783 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.52 5.64 -27.89 -0.16 -2.68 16 11 C 0.51 9.20 7.72 -10.98 -0.08 9.12 16 12 O -0.52 -11.17 14.12 5.56 0.08 -11.10 16 13 N -0.71 -9.17 5.44 -48.68 -0.27 -9.44 16 14 C 0.14 1.57 1.84 -132.97 -0.24 1.32 16 15 C -0.04 -0.48 4.81 -104.62 -0.50 -0.99 16 16 C -0.06 -0.72 8.18 -39.58 -0.32 -1.04 16 17 C -0.10 -1.25 9.83 -39.55 -0.39 -1.64 16 18 C -0.03 -0.33 6.32 -39.47 -0.25 -0.58 16 19 Cl -0.06 -0.64 27.96 -51.86 -1.45 -2.09 16 20 C -0.04 -0.46 6.32 -39.47 -0.25 -0.71 16 21 Cl -0.06 -0.62 27.96 -51.86 -1.45 -2.07 16 22 C -0.08 -0.94 9.47 -39.55 -0.37 -1.32 16 23 C -0.16 -1.66 9.82 -26.69 -0.26 -1.92 16 24 C -0.16 -1.32 10.12 -26.70 -0.27 -1.59 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.40 3.97 8.83 -40.82 -0.36 3.61 16 31 H 0.15 1.96 7.60 -52.49 -0.40 1.57 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.10 0.94 8.04 -51.93 -0.42 0.52 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -32.79 352.08 -10.22 -43.01 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.52 Total: 0.94 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.64 Total: -14.65 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.47 Total: -35.88 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -2.90 Total: -4.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.79 -10.22 -43.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292387708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.073 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds