Wall clock time and date at job start Tue Mar 31 2020 15:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47304 * 240.00301 * 3 2 1 5 5 H 1.48506 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47286 * 120.00107 * 3 2 1 7 7 C 1.37878 * 119.99436 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00584 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46797 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00159 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99790 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99869 * 184.98659 * 13 11 10 15 15 C 1.50700 * 115.55108 * 294.72791 * 14 13 11 16 16 C 1.38266 * 119.98086 * 98.23229 * 15 14 13 17 17 C 1.38204 * 120.04050 * 180.29793 * 16 15 14 18 18 C 1.38352 * 119.99313 * 359.44843 * 17 16 15 19 19 Cl 1.73599 * 120.01574 * 180.27287 * 18 17 16 20 20 C 1.38438 * 119.96389 * 0.54796 * 18 17 16 21 21 Cl 1.73605 * 120.02038 * 179.74821 * 20 18 17 22 22 C 1.38205 * 119.97968 * 278.24805 * 15 14 13 23 23 C 1.53006 * 117.49949 * 80.40031 * 14 13 11 24 24 C 1.53001 * 117.49857 * 149.05478 * 14 13 11 25 25 H 0.97001 * 119.99518 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46700 * 59.99627 * 9 7 2 27 27 H 1.09005 * 109.46541 * 300.00133 * 9 7 2 28 28 H 1.09000 * 109.47427 * 59.99734 * 10 9 7 29 29 H 1.08997 * 109.47170 * 299.99523 * 10 9 7 30 30 H 0.96994 * 120.00039 * 4.98002 * 13 11 10 31 31 H 1.07997 * 119.98374 * 0.02562 * 16 15 14 32 32 H 1.07996 * 120.00479 * 179.71729 * 17 16 15 33 33 H 1.07995 * 120.00099 * 359.96656 * 22 15 14 34 34 H 1.09001 * 117.49853 * 215.00812 * 23 14 13 35 35 H 1.09002 * 117.49675 * 0.02562 * 23 14 13 36 36 H 1.08996 * 117.50223 * 359.97438 * 24 14 13 37 37 H 1.09001 * 117.49787 * 144.99678 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2789 -4.9671 -0.0030 13 7 2.1655 -6.1344 -0.0014 14 6 1.4372 -7.4007 -0.1121 15 6 0.5285 -7.7312 1.0438 16 6 -0.8260 -7.4682 0.9549 17 6 -1.6595 -7.7651 2.0166 18 6 -1.1403 -8.3364 3.1647 19 17 -2.1879 -8.7161 4.4959 20 6 0.2158 -8.5998 3.2536 21 17 0.8698 -9.3106 4.6962 22 6 1.0496 -8.2967 2.1921 23 6 0.9922 -7.8399 -1.5086 24 6 2.1452 -8.5642 -0.8093 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8712 -3.6048 0.8890 29 1 2.8725 -3.6040 -0.8909 30 1 3.1326 -6.1360 0.0724 31 1 -1.2323 -7.0264 0.0571 32 1 -2.7167 -7.5552 1.9484 33 1 2.1076 -8.5022 2.2607 34 1 0.0421 -8.3678 -1.5913 35 1 1.2417 -7.1869 -2.3449 36 1 3.1526 -8.3874 -1.1859 37 1 1.9537 -9.5687 -0.4319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292387708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:16 Heat of formation + Delta-G solvation = -29.012413 kcal Electronic energy + Delta-G solvation = -22411.940485 eV Core-core repulsion = 18819.458156 eV Total energy + Delta-G solvation = -3592.482329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41282 -40.09464 -38.35428 -37.59165 -37.22783 -35.52516 -33.91450 -32.67609 -32.07159 -31.46173 -27.79683 -24.94414 -24.44446 -23.81022 -22.99989 -21.54146 -20.76070 -18.80539 -18.63938 -17.51934 -17.34056 -16.84471 -16.61663 -16.41387 -16.24696 -15.64569 -15.16269 -14.94079 -14.88490 -14.38671 -14.12362 -14.09574 -13.21408 -13.11732 -13.00452 -12.95505 -12.78340 -12.51210 -12.51106 -12.41206 -12.12345 -11.96852 -11.89197 -11.82263 -11.61818 -11.34272 -11.29990 -10.63526 -10.54916 -10.06952 -9.97950 -9.67462 -8.17151 -6.30835 -0.17859 0.03249 0.74798 1.10810 1.42234 1.46258 1.53925 1.77663 2.06924 2.40568 2.46495 2.78586 3.15945 3.36227 3.60236 3.84922 3.90152 4.08847 4.13046 4.20733 4.31450 4.48554 4.57782 4.58427 4.67056 4.74644 4.85134 4.97657 5.03795 5.11401 5.20512 5.35738 5.49829 5.51855 5.61931 5.66401 5.87208 6.19332 6.66037 6.87789 7.39000 7.43312 8.94979 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003027 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.287664 B = 9248.521748 C =10173.581206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.046 3.954 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.566 6.566 13 N -0.688 5.688 14 C 0.110 3.890 15 C -0.045 4.045 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.037 4.037 19 Cl -0.052 7.052 20 C -0.045 4.045 21 Cl -0.047 7.047 22 C -0.078 4.078 23 C -0.176 4.176 24 C -0.123 4.123 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.020 1.020 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.419 0.581 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -24.076 2.822 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.008 3.992 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.444 6.444 13 N -0.341 5.341 14 C 0.022 3.978 15 C -0.046 4.046 16 C -0.090 4.090 17 C -0.128 4.128 18 C -0.065 4.065 19 Cl -0.022 7.022 20 C -0.072 4.072 21 Cl -0.018 7.018 22 C -0.097 4.097 23 C -0.214 4.214 24 C -0.160 4.160 25 H 0.071 0.929 26 H 0.002 0.998 27 H -0.002 1.002 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.257 0.743 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.181 0.819 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.222 -24.053 3.057 24.612 hybrid contribution -0.017 1.191 0.366 1.246 sum 4.206 -22.862 3.423 23.497 Atomic orbital electron populations 1.70168 1.08228 1.27778 1.51442 1.26096 0.95690 1.03796 0.94681 0.85425 0.78115 0.77585 0.79442 1.18647 1.21385 1.18843 1.21702 0.93944 0.91781 1.50821 0.90789 1.18637 0.93613 0.92281 0.94622 1.21625 0.99353 0.90422 1.04554 1.21268 0.88083 0.86252 0.74163 1.90637 1.16086 1.88020 1.49611 1.45290 1.10558 1.02763 1.75508 1.19017 0.99963 0.86867 0.91926 1.19233 0.93223 0.97642 0.94551 1.21229 0.93417 0.95430 0.98887 1.21207 1.01898 0.98474 0.91247 1.20912 0.90216 1.03753 0.91583 1.98377 1.65696 1.92737 1.45438 1.20791 0.91758 1.03617 0.91061 1.98378 1.85694 1.81823 1.35908 1.21016 1.00825 0.97680 0.90197 1.23434 1.00605 1.03255 0.94097 1.23527 0.98324 0.95184 0.99011 0.92923 0.99773 1.00161 0.88320 0.87857 0.74281 0.85160 0.83032 0.81920 0.87719 0.88728 0.85507 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.05 2.52 4.26 29.85 0.13 2.65 16 10 C -0.12 -4.61 5.64 29.85 0.17 -4.44 16 11 C 0.51 18.38 7.72 87.66 0.68 19.06 16 12 O -0.57 -25.29 14.12 -3.02 -0.04 -25.34 16 13 N -0.69 -16.41 5.44 -426.32 -2.32 -18.73 16 14 C 0.11 2.29 1.84 2.86 0.01 2.30 16 15 C -0.04 -1.06 4.81 -19.87 -0.10 -1.16 16 16 C -0.07 -1.89 8.18 22.27 0.18 -1.71 16 17 C -0.11 -2.74 9.83 22.29 0.22 -2.52 16 18 C -0.04 -0.90 6.32 22.34 0.14 -0.76 16 19 Cl -0.05 -1.17 27.96 -2.72 -0.08 -1.25 16 20 C -0.04 -1.03 6.32 22.34 0.14 -0.88 16 21 Cl -0.05 -0.97 27.96 -2.72 -0.08 -1.05 16 22 C -0.08 -1.64 9.47 22.29 0.21 -1.43 16 23 C -0.18 -3.29 9.82 30.62 0.30 -2.99 16 24 C -0.12 -1.51 10.12 30.62 0.31 -1.21 16 25 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 26 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 27 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 28 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.42 6.91 8.83 -92.71 -0.82 6.09 16 31 H 0.13 3.80 7.60 -2.91 -0.02 3.78 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.10 1.87 8.04 -2.39 -0.02 1.86 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -74.35 352.08 3.16 -71.19 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.28 Total: 11.32 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.08 Total: -23.42 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.04 Total: -77.55 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.34 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.15 Total: -2.30 kcal Total: -74.35 3.16 -71.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292387708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.174 kcal (2) G-P(sol) polarization free energy of solvation -74.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds