Wall clock time and date at job start Tue Mar 31 2020 15:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00244 * 2 1 4 4 H 1.48505 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47130 * 300.00118 * 3 2 1 6 6 H 1.48500 * 109.47226 * 60.00454 * 3 2 1 7 7 C 1.40051 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00173 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99863 * 5.59764 * 9 7 2 11 11 N 1.34778 * 120.00232 * 185.60347 * 9 7 2 12 12 C 1.46923 * 120.63453 * 174.74626 * 11 9 7 13 13 C 1.53195 * 108.77690 * 233.63167 * 12 11 9 14 14 C 1.53038 * 109.30878 * 305.36298 * 13 12 11 15 15 C 1.50708 * 109.45846 * 181.38740 * 14 13 12 16 16 C 1.38331 * 120.01106 * 299.69461 * 15 14 13 17 17 Cl 1.73604 * 120.00712 * 0.25286 * 16 15 14 18 18 C 1.38353 * 119.98403 * 180.25772 * 16 15 14 19 19 C 1.38216 * 120.01774 * 0.03864 * 18 16 15 20 20 C 1.38228 * 120.02403 * 359.96085 * 19 18 16 21 21 C 1.38327 * 120.01384 * 119.97143 * 15 14 13 22 22 Cl 1.73604 * 120.00515 * 359.74617 * 21 15 14 23 23 C 1.53042 * 109.53057 * 61.37330 * 14 13 12 24 24 C 1.46925 * 120.62896 * 354.76770 * 11 9 7 25 25 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.59200 * 113.83722 * 12 11 9 27 27 H 1.09002 * 109.70002 * 353.48421 * 12 11 9 28 28 H 1.08999 * 109.49959 * 185.41253 * 13 12 11 29 29 H 1.08995 * 109.49775 * 65.31093 * 13 12 11 30 30 H 1.09005 * 109.46036 * 301.35783 * 14 13 12 31 31 H 1.08004 * 119.99410 * 180.02562 * 18 16 15 32 32 H 1.07998 * 119.99168 * 179.97438 * 19 18 16 33 33 H 1.08000 * 119.99154 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.49461 * 58.57391 * 23 14 13 35 35 H 1.08996 * 109.49749 * 178.67961 * 23 14 13 36 36 H 1.09006 * 109.58653 * 246.15707 * 24 11 9 37 37 H 1.09006 * 109.58810 * 6.44036 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3462 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0624 -2.4829 -0.1029 11 7 1.9440 -3.6450 0.1129 12 6 1.2182 -4.9171 0.2299 13 6 1.7169 -5.6566 1.4755 14 6 3.2381 -5.8055 1.4004 15 6 3.7287 -6.5625 2.6076 16 6 3.5098 -6.0578 3.8768 17 17 2.6642 -4.5552 4.0797 18 6 3.9651 -6.7505 4.9845 19 6 4.6391 -7.9464 4.8232 20 6 4.8581 -8.4513 3.5552 21 6 4.4030 -7.7596 2.4468 22 17 4.6787 -8.3935 0.8543 23 6 3.8870 -4.4198 1.3692 24 6 3.4130 -3.6665 0.1224 25 1 -0.4850 0.8401 0.0004 26 1 1.4029 -5.5260 -0.6550 27 1 0.1496 -4.7232 0.3235 28 1 1.2565 -6.6435 1.5214 29 1 1.4505 -5.0885 2.3668 30 1 3.5053 -6.3520 0.4958 31 1 3.7939 -6.3568 5.9755 32 1 4.9947 -8.4866 5.6881 33 1 5.3853 -9.3855 3.4297 34 1 3.5999 -3.8636 2.2616 35 1 4.9713 -4.5264 1.3394 36 1 3.7769 -4.1734 -0.7714 37 1 3.7933 -2.6451 0.1435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293569930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:17 Heat of formation + Delta-G solvation = -23.945964 kcal Electronic energy + Delta-G solvation = -23471.805039 eV Core-core repulsion = 19879.542408 eV Total energy + Delta-G solvation = -3592.262631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13920 -38.24696 -36.86490 -36.37247 -35.83497 -32.97796 -32.42138 -30.80934 -30.55362 -29.60729 -26.38603 -24.60402 -23.11958 -22.55416 -21.93767 -20.30236 -18.82357 -17.49376 -16.65668 -16.07271 -15.75269 -15.39405 -14.52405 -14.48185 -14.29294 -14.10376 -13.91779 -13.79172 -13.34892 -13.04015 -12.46996 -12.41072 -12.29548 -12.01257 -11.77406 -11.67826 -11.45162 -11.39091 -11.07766 -10.95918 -10.88938 -10.65532 -10.34636 -10.17381 -10.14162 -9.82176 -9.53788 -8.90374 -8.83444 -8.80177 -7.52521 -7.14124 -6.16707 -4.60598 0.78067 0.88792 1.76826 2.21257 3.13837 3.22250 3.23124 3.26153 4.11175 4.38734 4.56920 4.60473 4.66235 4.67657 4.96157 5.16332 5.22335 5.27161 5.31141 5.68033 5.75770 5.76714 5.86161 5.91668 5.95151 5.96137 6.11308 6.26280 6.31114 6.32710 6.44538 6.57801 6.62549 6.65574 6.92036 7.49168 7.69470 8.19309 8.41377 9.05800 9.49843 10.61649 10.80697 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003887 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.787532 B = 7201.003024 C = 7745.682960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.903 3.097 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.561 3.439 10 O -0.579 6.579 11 N -0.639 5.639 12 C 0.125 3.875 13 C -0.137 4.137 14 C -0.054 4.054 15 C -0.049 4.049 16 C -0.026 4.026 17 Cl -0.029 7.029 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.027 4.027 22 Cl -0.057 7.057 23 C -0.140 4.140 24 C 0.126 3.874 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 -15.927 9.226 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.367 3.633 10 O -0.462 6.462 11 N -0.377 5.377 12 C 0.001 3.999 13 C -0.175 4.175 14 C -0.072 4.072 15 C -0.050 4.050 16 C -0.053 4.053 17 Cl 0.000 7.000 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.054 4.054 22 Cl -0.028 7.028 23 C -0.178 4.178 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.814 -15.722 9.027 21.109 hybrid contribution 0.597 0.672 -0.033 0.899 sum 11.411 -15.050 8.994 20.919 Atomic orbital electron populations 1.70027 1.07037 1.27066 1.35624 1.25715 0.94572 1.00218 0.92623 0.86384 0.80587 0.82020 0.78207 1.18718 1.20167 1.20219 1.21017 0.93581 0.89293 1.54164 0.90889 1.18223 0.86849 0.82223 0.76031 1.90586 1.14510 1.86172 1.54912 1.48129 1.04559 1.05896 1.79162 1.21049 0.98448 0.85925 0.94501 1.22238 0.93109 1.00458 1.01691 1.20363 0.96697 0.96069 0.94083 1.19790 0.96566 0.93588 0.95088 1.20761 1.00103 0.90846 0.93635 1.98413 1.75067 1.29825 1.96649 1.21182 0.97959 0.95057 0.98211 1.21003 0.98994 0.95619 0.96944 1.21109 1.00064 1.00275 0.91115 1.20682 1.02438 0.95354 0.86950 1.98373 1.94906 1.85764 1.23709 1.22282 0.98898 0.94649 1.01994 1.21371 0.82697 1.01256 0.94572 0.92235 0.94287 0.89782 0.92304 0.89970 0.89376 0.84430 0.84374 0.84560 0.89756 0.92200 0.94243 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.84 55.55 0.66 -22.47 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.90 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -15.27 8.88 -35.63 -0.32 -15.58 16 8 H 0.07 1.87 5.64 -52.49 -0.30 1.58 16 9 C 0.56 16.05 7.61 -12.99 -0.10 15.95 16 10 O -0.58 -18.88 14.48 5.20 0.08 -18.80 16 11 N -0.64 -14.68 2.97 -174.42 -0.52 -15.20 16 12 C 0.13 2.52 6.41 -3.71 -0.02 2.49 16 13 C -0.14 -2.27 5.10 -26.61 -0.14 -2.41 16 14 C -0.05 -0.80 2.12 -91.73 -0.19 -0.99 16 15 C -0.05 -0.64 4.79 -104.55 -0.50 -1.14 16 16 C -0.03 -0.33 6.03 -39.50 -0.24 -0.57 16 17 Cl -0.03 -0.42 22.52 -51.86 -1.17 -1.59 16 18 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 19 C -0.11 -0.87 10.04 -39.59 -0.40 -1.27 16 20 C -0.11 -0.97 9.83 -39.54 -0.39 -1.35 16 21 C -0.03 -0.31 6.31 -39.51 -0.25 -0.56 16 22 Cl -0.06 -0.63 27.00 -51.86 -1.40 -2.03 16 23 C -0.14 -2.25 5.09 -26.61 -0.14 -2.38 16 24 C 0.13 2.38 6.35 -3.71 -0.02 2.36 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.90 7.04 -51.93 -0.37 1.53 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.47 4.99 -51.93 -0.26 1.21 16 30 H 0.09 1.28 6.17 -51.93 -0.32 0.96 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.08 1.45 4.96 -51.93 -0.26 1.19 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.89 5.30 -51.93 -0.28 1.62 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -33.65 322.71 -9.57 -43.22 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.87 Total: 1.37 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.19 Total: -4.50 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.14 Total: -37.66 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.08 Total: -18.80 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.57 Total: -3.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.65 -9.57 -43.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293569930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.277 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds