Wall clock time and date at job start Tue Mar 31 2020 15:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00244 * 2 1 4 4 H 1.48505 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47130 * 300.00118 * 3 2 1 6 6 H 1.48500 * 109.47226 * 60.00454 * 3 2 1 7 7 C 1.40051 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00173 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99863 * 5.59764 * 9 7 2 11 11 N 1.34778 * 120.00232 * 185.60347 * 9 7 2 12 12 C 1.46923 * 120.63453 * 174.74626 * 11 9 7 13 13 C 1.53195 * 108.77690 * 233.63167 * 12 11 9 14 14 C 1.53038 * 109.30878 * 305.36298 * 13 12 11 15 15 C 1.50708 * 109.45846 * 181.38740 * 14 13 12 16 16 C 1.38331 * 120.01106 * 299.69461 * 15 14 13 17 17 Cl 1.73604 * 120.00712 * 0.25286 * 16 15 14 18 18 C 1.38353 * 119.98403 * 180.25772 * 16 15 14 19 19 C 1.38216 * 120.01774 * 0.03864 * 18 16 15 20 20 C 1.38228 * 120.02403 * 359.96085 * 19 18 16 21 21 C 1.38327 * 120.01384 * 119.97143 * 15 14 13 22 22 Cl 1.73604 * 120.00515 * 359.74617 * 21 15 14 23 23 C 1.53042 * 109.53057 * 61.37330 * 14 13 12 24 24 C 1.46925 * 120.62896 * 354.76770 * 11 9 7 25 25 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.59200 * 113.83722 * 12 11 9 27 27 H 1.09002 * 109.70002 * 353.48421 * 12 11 9 28 28 H 1.08999 * 109.49959 * 185.41253 * 13 12 11 29 29 H 1.08995 * 109.49775 * 65.31093 * 13 12 11 30 30 H 1.09005 * 109.46036 * 301.35783 * 14 13 12 31 31 H 1.08004 * 119.99410 * 180.02562 * 18 16 15 32 32 H 1.07998 * 119.99168 * 179.97438 * 19 18 16 33 33 H 1.08000 * 119.99154 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.49461 * 58.57391 * 23 14 13 35 35 H 1.08996 * 109.49749 * 178.67961 * 23 14 13 36 36 H 1.09006 * 109.58653 * 246.15707 * 24 11 9 37 37 H 1.09006 * 109.58810 * 6.44036 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3462 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0624 -2.4829 -0.1029 11 7 1.9440 -3.6450 0.1129 12 6 1.2182 -4.9171 0.2299 13 6 1.7169 -5.6566 1.4755 14 6 3.2381 -5.8055 1.4004 15 6 3.7287 -6.5625 2.6076 16 6 3.5098 -6.0578 3.8768 17 17 2.6642 -4.5552 4.0797 18 6 3.9651 -6.7505 4.9845 19 6 4.6391 -7.9464 4.8232 20 6 4.8581 -8.4513 3.5552 21 6 4.4030 -7.7596 2.4468 22 17 4.6787 -8.3935 0.8543 23 6 3.8870 -4.4198 1.3692 24 6 3.4130 -3.6665 0.1224 25 1 -0.4850 0.8401 0.0004 26 1 1.4029 -5.5260 -0.6550 27 1 0.1496 -4.7232 0.3235 28 1 1.2565 -6.6435 1.5214 29 1 1.4505 -5.0885 2.3668 30 1 3.5053 -6.3520 0.4958 31 1 3.7939 -6.3568 5.9755 32 1 4.9947 -8.4866 5.6881 33 1 5.3853 -9.3855 3.4297 34 1 3.5999 -3.8636 2.2616 35 1 4.9713 -4.5264 1.3394 36 1 3.7769 -4.1734 -0.7714 37 1 3.7933 -2.6451 0.1435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293569930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:16 Heat of formation + Delta-G solvation = -43.787879 kcal Electronic energy + Delta-G solvation = -23472.665449 eV Core-core repulsion = 19879.542408 eV Total energy + Delta-G solvation = -3593.123041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16162 -39.84538 -37.84955 -37.59801 -37.21059 -34.73181 -34.30747 -32.07833 -31.59049 -30.83417 -28.41453 -26.00464 -24.09959 -23.98727 -23.08178 -21.79792 -20.48364 -18.53555 -18.32352 -17.71124 -16.97677 -16.51129 -16.19566 -15.91659 -15.49999 -15.30891 -15.15662 -14.99206 -14.81173 -14.42643 -14.18279 -13.49571 -13.43249 -13.34543 -13.29426 -13.03661 -12.90439 -12.75692 -12.58515 -12.49367 -12.30310 -11.98345 -11.84710 -11.59514 -11.49269 -11.44981 -10.94515 -10.76806 -9.80361 -9.71088 -9.67355 -9.03945 -8.27702 -6.81281 -0.00185 0.07492 0.90270 1.32484 1.38801 1.39320 1.56694 2.23937 2.45502 2.48045 2.87821 3.43459 3.65691 3.70507 3.91450 3.99041 4.07438 4.25067 4.28821 4.32669 4.42831 4.46423 4.60917 4.66826 4.82201 4.92149 4.94678 4.98291 5.02333 5.15220 5.18160 5.22047 5.23678 5.41808 5.54805 5.63064 5.80836 6.17315 6.44738 6.90011 7.46510 8.49890 8.69714 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003887 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.787532 B = 7201.003024 C = 7745.682960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.992 3.008 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.543 3.457 10 O -0.635 6.635 11 N -0.640 5.640 12 C 0.123 3.877 13 C -0.127 4.127 14 C -0.044 4.044 15 C -0.068 4.068 16 C -0.041 4.041 17 Cl -0.060 7.060 18 C -0.105 4.105 19 C -0.090 4.090 20 C -0.100 4.100 21 C -0.034 4.034 22 Cl -0.059 7.059 23 C -0.133 4.133 24 C 0.121 3.879 25 H 0.273 0.727 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.009 -17.409 10.611 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.604 4.604 8 H 0.111 0.889 9 C 0.349 3.651 10 O -0.522 6.522 11 N -0.376 5.376 12 C -0.001 4.001 13 C -0.166 4.166 14 C -0.062 4.062 15 C -0.070 4.070 16 C -0.068 4.068 17 Cl -0.031 7.031 18 C -0.124 4.124 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.061 4.061 22 Cl -0.030 7.030 23 C -0.171 4.171 24 C -0.002 4.002 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.196 0.804 33 H 0.182 0.818 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.145 -17.260 10.418 24.628 hybrid contribution -0.384 0.955 -0.431 1.115 sum 13.762 -16.305 9.988 23.558 Atomic orbital electron populations 1.70205 1.09540 1.28677 1.36941 1.26964 0.95453 1.04849 0.91265 0.85058 0.79607 0.75729 0.78483 1.16719 1.19423 1.19432 1.21524 0.94736 0.89800 1.54310 0.88903 1.18631 0.86474 0.84184 0.75803 1.90532 1.16793 1.87463 1.57445 1.47984 1.06370 1.05399 1.77844 1.21152 0.96407 0.85347 0.97173 1.22116 0.95124 1.00411 0.98902 1.20159 0.94736 0.95633 0.95682 1.19556 0.98606 0.94620 0.94214 1.20906 1.01080 0.90218 0.94555 1.98405 1.75949 1.32022 1.96697 1.21489 0.97360 0.95376 0.98175 1.21469 0.96868 0.94509 0.97948 1.21500 0.99008 1.00798 0.90574 1.20810 1.02630 0.95034 0.87654 1.98374 1.94888 1.85625 1.24066 1.22192 1.00316 0.94980 0.99627 1.21554 0.80078 1.01455 0.97082 0.91755 0.92616 0.93345 0.90523 0.91277 0.88887 0.82671 0.80441 0.81826 0.90926 0.89785 0.92345 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.58 11.84 21.84 0.26 -51.32 16 2 C 0.03 1.67 5.50 85.31 0.47 2.14 16 3 Si 0.99 41.70 29.56 68.60 2.03 43.73 16 4 H -0.24 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.57 -32.70 8.88 24.83 0.22 -32.48 16 8 H 0.09 4.80 5.64 -2.91 -0.02 4.78 16 9 C 0.54 32.58 7.61 86.36 0.66 33.24 16 10 O -0.63 -44.03 14.48 -4.32 -0.06 -44.09 16 11 N -0.64 -30.37 2.97 -823.97 -2.45 -32.82 16 12 C 0.12 5.14 6.41 86.36 0.55 5.70 16 13 C -0.13 -4.28 5.10 30.67 0.16 -4.12 16 14 C -0.04 -1.25 2.12 -11.51 -0.02 -1.27 16 15 C -0.07 -1.65 4.79 -19.82 -0.09 -1.75 16 16 C -0.04 -0.96 6.03 22.32 0.13 -0.82 16 17 Cl -0.06 -1.76 22.52 -2.72 -0.06 -1.82 16 18 C -0.11 -1.73 9.83 22.29 0.22 -1.51 16 19 C -0.09 -1.04 10.04 22.26 0.22 -0.81 16 20 C -0.10 -1.38 9.83 22.29 0.22 -1.16 16 21 C -0.03 -0.68 6.31 22.32 0.14 -0.54 16 22 Cl -0.06 -1.16 27.00 -2.72 -0.07 -1.23 16 23 C -0.13 -4.17 5.09 30.67 0.16 -4.01 16 24 C 0.12 4.60 6.35 86.36 0.55 5.15 16 25 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.35 7.04 -2.39 -0.02 2.33 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.55 4.99 -2.39 -0.01 2.54 16 30 H 0.09 2.55 6.17 -2.38 -0.01 2.54 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.07 2.50 4.96 -2.39 -0.01 2.49 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 3.30 5.30 -2.38 -0.01 3.28 16 Total: -1.00 -78.20 322.71 4.34 -73.86 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.12 Total: 15.95 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 3.58 Total: -2.26 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.19 Total: -84.15 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.06 Total: -44.09 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.13 Total: -3.05 kcal Total: -78.20 4.34 -73.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293569930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds